mRNA_H-paniculata_contig7413.15396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7413.15396.1
Unique NamemRNA_H-paniculata_contig7413.15396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.850e-26
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            QV+ISGPDDTPYSGGLFAFDIFFPHNYP  PPKVKL+TTGGG HRFNPNLYA
Sbjct:  709 QVMISGPDDTPYSGGLFAFDIFFPHNYPQTPPKVKLMTTGGGTHRFNPNLYA 760          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.340e-25
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            QV+ISGPDDTPYSGGLFAFDIFFP NYP  PPKVKL+TTGGG HRFNPNLYA
Sbjct: 1079 QVMISGPDDTPYSGGLFAFDIFFPDNYPQTPPKVKLMTTGGGTHRFNPNLYA 1130          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A7J7PN66_9CHLO (UBC core domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PN66_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 3.040e-19
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLY 153
            +V+I+GP+DTPY GG F FD+FFP NYPNVPPKV LVTTG G  RFNPNLY
Sbjct:  749 KVLITGPEDTPYGGGCFIFDMFFPPNYPNVPPKVNLVTTGNGGVRFNPNLY 799          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A835XSW9_9CHLO (UBC core domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSW9_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 5.660e-19
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            + II GP+DTPYSGG F FDI+FPH YPN PP+V L TTGGG  RFNPNLYA
Sbjct:  922 KAIIVGPEDTPYSGGCFVFDIYFPHTYPNQPPQVHLQTTGGGTVRFNPNLYA 973          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A7S3W2_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S3W2_NEMVE)

HSP 1 Score: 83.2 bits (204), Expect = 6.160e-19
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            + +++GP DTPYS G F FDIFFP  YPNVPP VKL+TTG G  RFNPNLYA
Sbjct:   18 RALVTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLITTGNGTVRFNPNLYA 69          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A8J4LPR0_9CHLO (UBC core domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LPR0_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.040e-18
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            + +I GP+DTPYSGG F FD++FP  YPN PP+V L+TTGGG+ RFNPNLYA
Sbjct:   81 KALIVGPEDTPYSGGCFVFDLYFPPQYPNAPPQVHLMTTGGGRVRFNPNLYA 132          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A5J4T695_9EUKA (UBC core domain-containing protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4T695_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-18
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    7 IISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLY 153
            ++ GP  TPY GGLF FDI FP  YP  PPKV++VTTGGG  RFNPNLY
Sbjct:    2 LVVGPQSTPYEGGLFEFDILFPQQYPTTPPKVEIVTTGGGAVRFNPNLY 50          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A383V5Q2_TETOB (UBC core domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V5Q2_TETOB)

HSP 1 Score: 86.7 bits (213), Expect = 1.440e-18
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLY 153
            + +I+GP+DTPY GG F FD+FFP NYPN PPKV LVTTG G  RFNPNLY
Sbjct:  842 KALITGPEDTPYGGGCFVFDMFFPPNYPNAPPKVNLVTTGNGSVRFNPNLY 892          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A6G0UKE8_9BILA (UBC core domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UKE8_9BILA)

HSP 1 Score: 86.7 bits (213), Expect = 1.440e-18
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            +V+I+GP+DTPY+ G+F FD+FFP NYPNVPPK + +TTG G  RFNPNLYA
Sbjct:  405 KVLITGPEDTPYANGIFEFDVFFPSNYPNVPPKCQFLTTGNGTVRFNPNLYA 456          
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Match: A0A8J4B7U6_9CHLO (UBC core domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B7U6_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.970e-18
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNLYA 156
            + +I GP+DTPYSGG F FD++FP  YPNVPP+V L+TTGGG+ RFNPNLYA
Sbjct:  779 KALIVGPEDTPYSGGCFVFDMYFPPQYPNVPPQVHLMTTGGGRVRFNPNLYA 830          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7413.15396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJC0_9PHAE3.850e-2690.38UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FMN8_ECTSI6.340e-2588.46Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A7J7PN66_9CHLO3.040e-1974.51UBC core domain-containing protein n=1 Tax=Scenede... [more]
A0A835XSW9_9CHLO5.660e-1973.08UBC core domain-containing protein n=1 Tax=Edaphoc... [more]
A7S3W2_NEMVE6.160e-1969.23Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A8J4LPR0_9CHLO1.040e-1867.31UBC core domain-containing protein n=1 Tax=Volvox ... [more]
A0A5J4T695_9EUKA1.430e-1867.35UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A383V5Q2_TETOB1.440e-1870.59UBC core domain-containing protein n=1 Tax=Tetrade... [more]
A0A6G0UKE8_9BILA1.440e-1867.31UBC core domain-containing protein n=1 Tax=Halicep... [more]
A0A8J4B7U6_9CHLO1.970e-1869.23UBC core domain-containing protein n=2 Tax=Volvox ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7413contigH-paniculata_contig7413:323..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.4e-21
Seed eggNOG ortholog2880.D7FMN8
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.6838713-CDS-H-paniculata_contig7413:322..4781622930908.6838713-CDS-H-paniculata_contig7413:322..478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7413 323..478 -
1691481505.9376965-CDS-H-paniculata_contig7413:322..4781691481505.9376965-CDS-H-paniculata_contig7413:322..478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7413 323..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7413.15396.1prot_H-paniculata_contig7413.15396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7413 323..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7413.15396.1

>prot_H-paniculata_contig7413.15396.1 ID=prot_H-paniculata_contig7413.15396.1|Name=mRNA_H-paniculata_contig7413.15396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
QVIISGPDDTPYSGGLFAFDIFFPHNYPNVPPKVKLVTTGGGQHRFNPNL
YA
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mRNA from alignment at H-paniculata_contig7413:323..478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7413.15396.1 ID=mRNA_H-paniculata_contig7413.15396.1|Name=mRNA_H-paniculata_contig7413.15396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig7413:323..478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGATCATTTCTGGGCCGGACGACACGCCCTATTCCGGGGGACTATT CGCGTTCGATATTTTTTTCCCGCACAATTATCCAAACGTGCCTCCAAAGG TCAAACTCGTGACTACAGGTGGAGGGCAGCACCGCTTCAACCCAAACCTG TACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7413:323..478-

>mRNA_H-paniculata_contig7413.15396.1 ID=mRNA_H-paniculata_contig7413.15396.1|Name=mRNA_H-paniculata_contig7413.15396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig7413:323..478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGATCATTTCTGGGCCGGACGACACGCCCTATTCCGGGGGACTATT
CGCGTTCGATATTTTTTTCCCGCACAATTATCCAAACGTGCCTCCAAAGG
TCAAACTCGTGACTACAGGTGGAGGGCAGCACCGCTTCAACCCAAACCTG
TACGCCCAGGTGATCATTTCTGGGCCGGACGACACGCCCTATTCCGGGGG
ACTATTCGCGTTCGATATTTTTTTCCCGCACAATTATCCAAACGTGCCTC
CAAAGGTCAAACTCGTGACTACAGGTGGAGGGCAGCACCGCTTCAACCCA
AACCTGTACGCC
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