mRNA_H-paniculata_contig7406.15382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7406.15382.1
Unique NamemRNA_H-paniculata_contig7406.15382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KL34_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL34_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.440e-19
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLA 231
            LGFTG + S DVT I+W CCP S AR YTGKEGF +IAYQA VDH+GRVLA
Sbjct:   15 LGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVDHTGRVLA 65
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BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5JBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.480e-17
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVTT 240
            LG TG + S DVT I W  CP ++ RSYTGKEGF TIAYQ TVDH+GR +A+T+
Sbjct:   27 LGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITS 80
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BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.280e-17
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVT 237
            LGFTG + S DVT I+W  CP S AR YTGKEG  +IAYQA VDH+GR+LAVT
Sbjct:    7 LGFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVT 59
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.130e-16
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVTT 240
            LG TG + S DVT I W  CP ++ RSYTGKEGF TIAYQ TVDH+GR +A+T+
Sbjct:    7 LGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITS 60
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.380e-16
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVT 237
            LGFTG + S DVT I+W CCP S AR YTGKEGF +IAYQA V+ +G VLAVT
Sbjct:    7 LGFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVNDTGLVLAVT 59
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.860e-16
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVTT 240
            LG TG + S DVT I W  CP ++ RSYTGKEGF TIAYQ TVDH+GR +A+T+
Sbjct:   69 LGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITS 122
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.120e-16
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVT 237
            LGFTG V S DVT I W  CP + ARSYTGKEGF TIAYQ TVDH+GR +AVT
Sbjct:  153 LGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVT 205
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.290e-15
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVT 237
            L F G + S DVT I+W CCP S AR Y GKEGF +IAYQA VDH+G VLAVT
Sbjct:    8 LEFAGAIRSTDVTHIRWACCPYSWARQYMGKEGFPSIAYQAIVDHTGHVLAVT 60
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.660e-15
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVTT 240
            LG TG + S DVT I W  CP ++ RSYTGKEGF TIAYQ TVDH+GR +A+T+
Sbjct:   69 LGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITS 122
[Close]
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.480e-15
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   79 LGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGFATIAYQATVDHSGRVLAVT 237
            LG+TG   S DVT I W+ CP ++ RS+TGKEGF TIAY+ TVDH+GR LAVT
Sbjct:  130 LGYTGACGSTDVTHIDWNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVT 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7406.15382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL34_9PHAE8.440e-1972.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBS8_9PHAE6.480e-1762.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE9.280e-1767.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE1.130e-1662.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVT5_9PHAE3.380e-1667.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE3.860e-1662.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE5.120e-1671.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KQK3_9PHAE1.290e-1566.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.660e-1562.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF0_9PHAE3.480e-1564.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7406contigH-paniculata_contig7406:10335..10610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6.9e-13
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size278
Cds size246
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.0484898-UTR-H-paniculata_contig7406:10334..103641622930907.0484898-UTR-H-paniculata_contig7406:10334..10364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7406 10335..10364 +
1691481505.1603444-UTR-H-paniculata_contig7406:10334..103641691481505.1603444-UTR-H-paniculata_contig7406:10334..10364Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7406 10335..10364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930907.0661209-CDS-H-paniculata_contig7406:10364..106101622930907.0661209-CDS-H-paniculata_contig7406:10364..10610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7406 10365..10610 +
1691481505.1742234-CDS-H-paniculata_contig7406:10364..106101691481505.1742234-CDS-H-paniculata_contig7406:10364..10610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7406 10365..10610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7406.15382.1prot_H-paniculata_contig7406.15382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7406 10365..10610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7406.15382.1

>prot_H-paniculata_contig7406.15382.1 ID=prot_H-paniculata_contig7406.15382.1|Name=mRNA_H-paniculata_contig7406.15382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MSISSCRRGRLSRRLCLGFTGVVSSADVTRIKWDCCPCSVARSYTGKEGF
ATIAYQATVDHSGRVLAVTTWRCRWFVRIPCI
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mRNA from alignment at H-paniculata_contig7406:10335..10610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7406.15382.1 ID=mRNA_H-paniculata_contig7406.15382.1|Name=mRNA_H-paniculata_contig7406.15382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig7406:10335..10610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCAAGAACTTTTCGGCAGAGCTGTTCGATGAGCATATCTTCCTGCCG
ACGGGGCAGACTCTCGAGAAGGTTATGCTTGGGGTTCACCGGGGTTGTCA
GCTCAGCTGATGTTACCCGCATCAAATGGGACTGCTGCCCGTGCTCCGTT
GCACGTTCTTACACGGGCAAGGAGGGATTCGCAACCATCGCATACCAAGC
GACGGTCGATCACAGTGGCCGTGTCCTTGCCGTTACGACCTGGCGGTGCA
GATGGTTCGTGAGGATTCCATGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig7406:10335..10610+

>mRNA_H-paniculata_contig7406.15382.1 ID=mRNA_H-paniculata_contig7406.15382.1|Name=mRNA_H-paniculata_contig7406.15382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig7406:10335..10610+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCATATCTTCCTGCCGACGGGGCAGACTCTCGAGAAGGTTATGCTT
GGGGTTCACCGGGGTTGTCAGCTCAGCTGATGTTACCCGCATCAAATGGG
ACTGCTGCCCGTGCTCCGTTGCACGTTCTTACACGGGCAAGGAGGGATTC
GCAACCATCGCATACCAAGCGACGGTCGATCACAGTGGCCGTGTCCTTGC
CGTTACGACCTGGCGGTGCAGATGGTTCGTGAGGATTCCATGTATAATGA
GCATATCTTCCTGCCGACGGGGCAGACTCTCGAGAAGGTTATGCTTGGGG
TTCACCGGGGTTGTCAGCTCAGCTGATGTTACCCGCATCAAATGGGACTG
CTGCCCGTGCTCCGTTGCACGTTCTTACACGGGCAAGGAGGGATTCGCAA
CCATCGCATACCAAGCGACGGTCGATCACAGTGGCCGTGTCCTTGCCGTT
ACGACCTGGCGGTGCAGATGGTTCGTGAGGATTCCATGTATA
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