mRNA_H-paniculata_contig73863.15357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73863.15357.1
Unique NamemRNA_H-paniculata_contig73863.15357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: I0YQI7_COCSC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQI7_COCSC)

HSP 1 Score: 71.2 bits (173), Expect = 3.710e-13
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPV 132
            QGHDVVGVFMRNWD ++E G+ AC AD D  DAQ+V  HLGIP+
Sbjct:   45 QGHDVVGVFMRNWDEAEERGDSACSADADWTDAQRVAAHLGIPI 88          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: A0A5A8C4H8_CAFRO (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4H8_CAFRO)

HSP 1 Score: 71.2 bits (173), Expect = 3.880e-13
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPV 132
            QGHDVVGVFMRNWD +DE G+  CP D DL+ AQ V +HLGIP+
Sbjct:   54 QGHDVVGVFMRNWDSADEAGQAVCPQDADLESAQAVAQHLGIPL 97          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: A0A5A8BZC9_CAFRO (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZC9_CAFRO)

HSP 1 Score: 71.2 bits (173), Expect = 3.940e-13
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPV 132
            QGHDVVGVFMRNWD +DE G+  CP D DL+ AQ V +HLGIP+
Sbjct:   54 QGHDVVGVFMRNWDSADEAGQAVCPQDADLESAQAVAQHLGIPL 97          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: A0A024GML0_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GML0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.650e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QGH V GV+M+NWD SDE G + CP D DL+D Q V E LGIP++T +
Sbjct:   50 QGHKVTGVYMKNWDSSDEVGTQCCPQDQDLQDVQLVCEQLGIPLRTTN 97          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: A0A8J9REA9_9CHLO (tRNA-specific 2-thiouridylase MnmA n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REA9_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.080e-10
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPV 132
            QGH+V+GVFMRNWD S+E GE AC A+ D   AQ V  HL IP+
Sbjct:   33 QGHEVIGVFMRNWDESEERGESACSAEADWNAAQTVANHLSIPI 76          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: F0WRA3_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WRA3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.080e-10
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QGH V GV+M+NWD SDE G + CP D DLKD Q V + L IP+ T +
Sbjct:   50 QGHKVTGVYMKNWDSSDEVGAQCCPQDQDLKDVQSVCKQLDIPIHTTN 97          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: D0ND99_PHYIT (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=3 Tax=Phytophthora TaxID=4783 RepID=D0ND99_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.460e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QG+ V GV+M+NWD SDEEGE ACP D++  D QKV E LGI  + V+
Sbjct:   17 QGYHVTGVYMKNWDPSDEEGESACPVDSEYVDVQKVCEQLGIEAQMVN 64          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: W2QT47_PHYPN (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=10 Tax=Phytophthora TaxID=4783 RepID=W2QT47_PHYPN)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QG+ V GV+M+NWD SDEEGE ACP D++  D QKV E LGI  + V+
Sbjct:   75 QGYHVTGVYMKNWDPSDEEGESACPVDSEYLDVQKVCEQLGIEAQMVN 122          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: A0A835YVZ5_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.900e-10
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QG+DVV V MRNWDRSDEEG EAC AD D  D Q+V   L IP  +V+
Sbjct:   17 QGYDVVAVHMRNWDRSDEEGREACTADADWADVQRVCRQLQIPCHSVN 64          
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Match: H3G702_PHYRM (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G702_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 1.910e-10
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 QGHDVVGVFMRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVS 144
            QG+ V GV+M+NWD SDEEGE ACP D++  D QKV E LGI  + V+
Sbjct:   26 QGYRVTGVYMKNWDPSDEEGESACPVDSEYLDVQKVCEQLGIEAQMVN 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73863.15357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0YQI7_COCSC3.710e-1368.18tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A5A8C4H8_CAFRO3.880e-1368.18tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A5A8BZC9_CAFRO3.940e-1368.18tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A024GML0_9STRA1.650e-1158.33tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A8J9REA9_9CHLO1.080e-1061.36tRNA-specific 2-thiouridylase MnmA n=1 Tax=Coccomy... [more]
F0WRA3_9STRA1.080e-1056.25tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
D0ND99_PHYIT1.460e-1058.33tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
W2QT47_PHYPN1.480e-1058.33tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A835YVZ5_9STRA1.900e-1062.50tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
H3G702_PHYRM1.910e-1058.33tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73863contigH-paniculata_contig73863:256..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptiontRNA-specific 2-thiouridylase
Ec32 orthologEc-28_002930.1
Exons1
Model size159
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.1286733-CDS-H-paniculata_contig73863:255..3871622930903.1286733-CDS-H-paniculata_contig73863:255..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73863 256..387 -
1691481503.5723386-CDS-H-paniculata_contig73863:255..3871691481503.5723386-CDS-H-paniculata_contig73863:255..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73863 256..387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.1551485-UTR-H-paniculata_contig73863:387..4141622930903.1551485-UTR-H-paniculata_contig73863:387..414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig73863 388..414 -
1691481503.58363-UTR-H-paniculata_contig73863:387..4141691481503.58363-UTR-H-paniculata_contig73863:387..414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig73863 388..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73863.15357.1prot_H-paniculata_contig73863.15357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73863 256..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73863.15357.1

>prot_H-paniculata_contig73863.15357.1 ID=prot_H-paniculata_contig73863.15357.1|Name=mRNA_H-paniculata_contig73863.15357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MRNWDRSDEEGEEACPADNDLKDAQKVGEHLGIPVKTVSGWVS*
back to top

mRNA from alignment at H-paniculata_contig73863:256..414-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73863.15357.1 ID=mRNA_H-paniculata_contig73863.15357.1|Name=mRNA_H-paniculata_contig73863.15357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig73863:256..414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGCACGATGTTGTTGGCGTGTTCATGCGAAATTGGGATAGAAGTGA TGAAGAGGGAGAGGAGGCTTGCCCTGCAGACAACGATCTAAAGGATGCCC AGAAGGTTGGCGAACACCTGGGTATACCCGTCAAGACGGTGAGTGGTTGG GTCTCTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig73863:256..414-

>mRNA_H-paniculata_contig73863.15357.1 ID=mRNA_H-paniculata_contig73863.15357.1|Name=mRNA_H-paniculata_contig73863.15357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig73863:256..414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAATTGGGATAGAAGTGATGAAGAGGGAGAGGAGGCTTGCCCTGC
AGACAACGATCTAAAGGATGCCCAGAAGGTTGGCGAACACCTGGGTATAC
CCGTCAAGACGGTGAGTGGTTGGGTCTCTTAGATGCGAAATTGGGATAGA
AGTGATGAAGAGGGAGAGGAGGCTTGCCCTGCAGACAACGATCTAAAGGA
TGCCCAGAAGGTTGGCGAACACCTGGGTATACCCGTCAAGACGGTGAGTG
GTTGGGTCTCTTAG
back to top