mRNA_H-paniculata_contig73631.15332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73631.15332.1
Unique NamemRNA_H-paniculata_contig73631.15332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A0R6LUT7_UNDPI (50S ribosomal protein L5, chloroplastic n=24 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6LUT7_UNDPI)

HSP 1 Score: 249 bits (635), Expect = 1.530e-82
Identity = 126/134 (94.03%), Postives = 132/134 (98.51%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NNKTLQKSV+E+RLITGQQPILTKAKKSIA FKVREEM+LGITVTLR+KKMYAFLEKLIH+VLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTA+TK EGIALLKEFGFPLTD
Sbjct:   54 NNKTLQKSVDEMRLITGQQPILTKAKKSIAGFKVREEMVLGITVTLRSKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAQTKIEGIALLKEFGFPLTD 187
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A1I9LVU6_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVU6_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 3.600e-81
Identity = 124/133 (93.23%), Postives = 129/133 (96.99%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLT 399
            NNKTLQKS+EE+RLI+GQQPILTKAKKSIA FKVREEM LGITVTLR+ KMYAFLEKLIH+VLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKG NISIVTTAKTKNEGIALLKEFGFPLT
Sbjct:   54 NNKTLQKSIEEIRLISGQQPILTKAKKSIAGFKVREEMTLGITVTLRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT 186
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A8F0F770_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F770_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 5.960e-80
Identity = 120/134 (89.55%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NNKTLQKS++E+RLITGQQPILTKAKKSIA FKVREEM LG+TVTLRN KMY FLEKL+H+VLPRIRDFRGLS KGFDR GNYNFGL+EQLVFPEI+YENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD
Sbjct:   54 NNKTLQKSIDEIRLITGQQPILTKAKKSIAGFKVREEMNLGVTVTLRNNKMYTFLEKLVHLVLPRIRDFRGLSSKGFDREGNYNFGLQEQLVFPEINYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 187
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A2R4QQ29_9PHAE (50S ribosomal protein L5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ29_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.440e-79
Identity = 119/132 (90.15%), Postives = 129/132 (97.73%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPL 396
            NNK LQKS+EE+RLITGQQPI+TKAKKSIA FKVREEMILG+TVTLRNKKMYAFLEKLIH+VLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISY++VDQ+KG NISIVTTA+TK+EGIALLKEFGFPL
Sbjct:   54 NNKILQKSIEEIRLITGQQPIVTKAKKSIAGFKVREEMILGVTVTLRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYDSVDQVKGLNISIVTTAQTKSEGIALLKEFGFPL 185
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A141BSM9_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM9_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.400e-78
Identity = 116/134 (86.57%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NNK LQKS+EE+R+ITGQ PI+TKAK SIA FKVREEM+LG+TVTLRNKKMYAFLEKLIH+VLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEI+YENVDQI+G NISIVTTAKTK+EG+ALLKEFGFPL +
Sbjct:   54 NNKILQKSIEEIRIITGQHPIITKAKNSIAGFKVREEMVLGVTVTLRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEINYENVDQIRGLNISIVTTAKTKSEGVALLKEFGFPLNE 187
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A8E6D6M4_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6M4_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 4.670e-77
Identity = 114/134 (85.07%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            N+K LQKSV+E+RLITGQQPI+TKAKKSIA FKVRE+MILG+TVTLRN KMY FLEKLIH+VLPRIRDFRGLSLKGFDR GNYNFGL+EQL FPEI+YE++DQ++GFNISIVTTAKT+NEGIALLKEFGFPLTD
Sbjct:   54 NSKILQKSVDEIRLITGQQPIITKAKKSIAGFKVREDMILGVTVTLRNSKMYIFLEKLIHLVLPRIRDFRGLSLKGFDREGNYNFGLREQLAFPEINYESIDQLRGFNISIVTTAKTRNEGIALLKEFGFPLTD 187
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A2I4Q2J9_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J9_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.020e-73
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NNK LQKSV+E+RLITGQQP+LTKAKKSIA FKVRE M LGITVTLR  KMY FLEKLIH+VLPRIRDFRGLS K FDRNGNY+FGL+EQLVFPEISYENVDQI+G NISIVTTAKT+ EGIALLKEFGFPL +
Sbjct:   54 NNKLLQKSVDEIRLITGQQPVLTKAKKSIAGFKVREHMTLGITVTLRQTKMYTFLEKLIHLVLPRIRDFRGLSTKNFDRNGNYHFGLQEQLVFPEISYENVDQIRGLNISIVTTAKTQAEGIALLKEFGFPLIE 187
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A7S6ZPC4_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC4_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.990e-69
Identity = 104/134 (77.61%), Postives = 122/134 (91.04%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NN  LQKSV E+R+++GQQPI+TKAKKSIA FK+REEM LG+TVTLR  KMY FLEKLIH+VLPR+RDFRGLS KGFD+ GNYNFGL+EQLVFPEI+Y++VD+ +GFNISIVTTAKTK+EGI+LLKEFGFPL D
Sbjct:   57 NNSILQKSVNEIRIVSGQQPIITKAKKSIAGFKIREEMNLGVTVTLRKLKMYDFLEKLIHLVLPRVRDFRGLSTKGFDKFGNYNFGLQEQLVFPEINYDDVDKTRGFNISIVTTAKTKDEGISLLKEFGFPLVD 190
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BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: B7T1X2_VAULI (50S ribosomal protein L5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X2_VAULI)

HSP 1 Score: 211 bits (537), Expect = 1.200e-67
Identity = 102/134 (76.12%), Postives = 122/134 (91.04%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 402
            NN  L+KS+EE R ITGQQPI+TKAKKSIA+FKVRE M LG+TVTLR  KMY+FLEKLIH+VLPRIRDFRGLS+KGFD+NGN+NFG++EQLVFPEI+Y+ ++Q +G NI+IV+TAKTK+EGIALLKEFGFPL D
Sbjct:   52 NNSLLKKSIEEFRTITGQQPIVTKAKKSIATFKVRETMNLGVTVTLRGNKMYSFLEKLIHLVLPRIRDFRGLSIKGFDKNGNFNFGIREQLVFPEINYDIINQTRGLNITIVSTAKTKDEGIALLKEFGFPLID 185
[Close]
BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Match: A0A8E5BGR0_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BGR0_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.820e-67
Identity = 102/132 (77.27%), Postives = 121/132 (91.67%), Query Frame = 1 
Query:    1 NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKKMYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPL 396
            N K L++++EEVRLITGQQP+LTKAKKSIA FK+RE+MILG+TVTLRNKKMY FL KLIH+VLPRIRDFRGLS+KGFDR GNYNFGLKEQLVFPEI+YE+V +I GFNIS+VTTA+T+ EG  LL++FGFP+
Sbjct:   53 NKKILERAIEEVRLITGQQPVLTKAKKSIAGFKIREDMILGLTVTLRNKKMYEFLTKLIHLVLPRIRDFRGLSIKGFDRKGNYNFGLKEQLVFPEINYEDVKKINGFNISLVTTAQTEVEGKYLLEQFGFPI 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73631.15332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6LUT7_UNDPI1.530e-8294.0350S ribosomal protein L5, chloroplastic n=24 Tax=P... [more]
A0A1I9LVU6_9PHAE3.600e-8193.2350S ribosomal protein L5, chloroplastic n=14 Tax=P... [more]
A0A8F0F770_9PHAE5.960e-8089.5550S ribosomal protein L5, chloroplastic n=1 Tax=Pr... [more]
A0A2R4QQ29_9PHAE3.440e-7990.1550S ribosomal protein L5, chloroplastic n=3 Tax=Fu... [more]
A0A141BSM9_9PHAE1.400e-7886.5750S ribosomal protein L5, chloroplastic n=14 Tax=S... [more]
A0A8E6D6M4_9PHAE4.670e-7785.0750S ribosomal protein L5, chloroplastic n=1 Tax=Is... [more]
A0A2I4Q2J9_9PHAE6.020e-7384.3350S ribosomal protein L5, chloroplastic n=1 Tax=Di... [more]
A0A7S6ZPC4_9STRA2.990e-6977.6150S ribosomal protein L5, chloroplastic n=1 Tax=Sc... [more]
B7T1X2_VAULI1.200e-6776.1250S ribosomal protein L5, chloroplastic n=1 Tax=Va... [more]
A0A8E5BGR0_9PHAE1.820e-6777.2750S ribosomal protein L5, chloroplastic n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73631contigH-paniculata_contig73631:230..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue4.9e-64
Seed eggNOG ortholog2880.D1J740
Preferred namerpl5
KEGG koko:K02931
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0094@1,KOG0398@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.7651932-CDS-H-paniculata_contig73631:229..6341622930899.7651932-CDS-H-paniculata_contig73631:229..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73631 230..634 -
1691481502.0480769-CDS-H-paniculata_contig73631:229..6341691481502.0480769-CDS-H-paniculata_contig73631:229..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73631 230..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73631.15332.1prot_H-paniculata_contig73631.15332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73631 230..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73631.15332.1

>prot_H-paniculata_contig73631.15332.1 ID=prot_H-paniculata_contig73631.15332.1|Name=mRNA_H-paniculata_contig73631.15332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
NNKTLQKSVEEVRLITGQQPILTKAKKSIASFKVREEMILGITVTLRNKK
MYAFLEKLIHIVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYEN
VDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD*
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mRNA from alignment at H-paniculata_contig73631:230..634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73631.15332.1 ID=mRNA_H-paniculata_contig73631.15332.1|Name=mRNA_H-paniculata_contig73631.15332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig73631:230..634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAATAAAACCCTACAAAAATCTGTTGAAGAAGTACGTTTAATTACTGG
CCAACAACCAATTTTAACGAAGGCTAAAAAATCTATTGCTAGTTTTAAAG
TTAGGGAAGAAATGATTTTAGGAATAACTGTAACTCTTAGAAATAAAAAA
ATGTATGCTTTTTTAGAAAAATTAATTCATATAGTTTTACCGAGAATTAG
AGATTTTCGAGGTTTGAGTTTAAAAGGATTTGATCGTAATGGTAATTATA
ATTTTGGGTTGAAAGAACAGTTGGTCTTCCCTGAAATTAGTTATGAAAAT
GTCGACCAAATCAAAGGTTTTAATATTTCTATAGTAACAACAGCAAAAAC
AAAAAATGAGGGAATTGCTCTTCTAAAAGAATTTGGTTTTCCATTAACTG
ACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig73631:230..634-

>mRNA_H-paniculata_contig73631.15332.1 ID=mRNA_H-paniculata_contig73631.15332.1|Name=mRNA_H-paniculata_contig73631.15332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig73631:230..634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAATAAAACCCTACAAAAATCTGTTGAAGAAGTACGTTTAATTACTGG
CCAACAACCAATTTTAACGAAGGCTAAAAAATCTATTGCTAGTTTTAAAG
TTAGGGAAGAAATGATTTTAGGAATAACTGTAACTCTTAGAAATAAAAAA
ATGTATGCTTTTTTAGAAAAATTAATTCATATAGTTTTACCGAGAATTAG
AGATTTTCGAGGTTTGAGTTTAAAAGGATTTGATCGTAATGGTAATTATA
ATTTTGGGTTGAAAGAACAGTTGGTCTTCCCTGAAATTAGTTATGAAAAT
GTCGACCAAATCAAAGGTTTTAATATTTCTATAGTAACAACAGCAAAAAC
AAAAAATGAGGGAATTGCTCTTCTAAAAGAATTTGGTTTTCCATTAACTG
ACTAAAATAATAAAACCCTACAAAAATCTGTTGAAGAAGTACGTTTAATT
ACTGGCCAACAACCAATTTTAACGAAGGCTAAAAAATCTATTGCTAGTTT
TAAAGTTAGGGAAGAAATGATTTTAGGAATAACTGTAACTCTTAGAAATA
AAAAAATGTATGCTTTTTTAGAAAAATTAATTCATATAGTTTTACCGAGA
ATTAGAGATTTTCGAGGTTTGAGTTTAAAAGGATTTGATCGTAATGGTAA
TTATAATTTTGGGTTGAAAGAACAGTTGGTCTTCCCTGAAATTAGTTATG
AAAATGTCGACCAAATCAAAGGTTTTAATATTTCTATAGTAACAACAGCA
AAAACAAAAAATGAGGGAATTGCTCTTCTAAAAGAATTTGGTTTTCCATT
AACTGACTAA
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