mRNA_H-paniculata_contig7363.15331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.640e-30 Identity = 69/198 (34.85%), Postives = 106/198 (53.54%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GKV K+K LV +GF QI + SP P+ ASI+++L A K + H+D +QA+ A + EEV + IP + + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V V+V++ D IL D A+ L +F K+ G+ E++ GC + R+ + K+
Sbjct: 7 FSWKTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKI 203
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 125 bits (314), Expect = 9.970e-30 Identity = 69/198 (34.85%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+LG+ E++ GC + R+ +A L++
Sbjct: 588 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECEWFDGCAIERDVEAGTLRI 784
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.580e-29 Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+LG+ +++ GC + R+ +A L++
Sbjct: 788 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRI 984
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.650e-29 Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+LG+ +++ GC + R+ +A L++
Sbjct: 1167 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRI 1363
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.660e-29 Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+LG+ +++ GC + R+ +A L++
Sbjct: 1187 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRI 1383
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.670e-29 Identity = 68/198 (34.34%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+LG+ +++ GC + R+ +A L++
Sbjct: 1330 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRI 1526
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 123 bits (308), Expect = 4.200e-29 Identity = 67/198 (33.84%), Postives = 109/198 (55.05%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K + +GK+ K+K RLV +GF +I Y SP P+ ASI+++L A K + H+D +QA+ A + EE+ + +P +G +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D +L D A+ L+ +F K+LG+ E++ C + R+ +A LK+
Sbjct: 213 FSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLAS-LKKKFPTKNLGECEWFHRCAIERDVEAGTLKI 409
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 121 bits (304), Expect = 2.190e-28 Identity = 69/199 (34.67%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHF-PGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
+K K G ++++K RLV +GF Q +G + E Y+P ++R LL +D E+ D + AFL ++ EE+ ++ P+ + P +V L K I+GL QA R + K ++ + F S +D +F V+DGE VVV D IL AK + HL +F ++DLG AE+++G +TR+R+AR +KL
Sbjct: 611 YKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKL 808
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A2I0JXD3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JXD3_PUNGR) HSP 1 Score: 116 bits (291), Expect = 6.760e-28 Identity = 67/190 (35.26%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFP-GSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTR 570
+K K DG +++YK RLVV+GF Q+EG Y E ++P + ++R LL AV K+ ++ + AFL D+ EEV +E+P F G+V L K+++GL QA R KF D + F QS AD +F G + V+V+ D ++ R+ F +L+ F++KDLG ++++G VT+
Sbjct: 128 YKVKRRADGSIERYKARLVVKGFTQVEGVDYCETFAPVAKLVTVRCLLTVAVAKEWQIHQMNVNNAFLHRDLDEEVYMELPPGFSTSRNGNVCRLRKSLYGLRQASRNWFSKFADALRQYGFIQSGADHSLFT-FTRGTIFLGVLVYVDDLIIVGNSRSHCDSFKGYLDKCFRIKDLGPLKYFLGIEVTK 316
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 119 bits (299), Expect = 9.620e-28 Identity = 66/198 (33.33%), Postives = 107/198 (54.04%), Query Frame = 1
Query: 4 FKCKVSKDGKVKKYKCRLVVQGFPQIEGSHYTEKYSPTPAIASIRMLLVTAVTKDGEMRHFDAEQAFLKADIGEEV*IEIPERFPHFPGSVGTLNKAIHGLVQAGRCRNIKFCDDMTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATHLEGRFKLKDLGDAEFYMGCHVTRNRKARELKL 597
F K +K+GK+ +K RLV +GF QI Y SP P+ ASI+++L A K + H+D +QA+ A + EEV +++P + +AI+GL Q+GR D + FEQ +ADP +FRK+VD V ++V++ D IL D A+ L +F K+L + +++ GC + R+ + L++
Sbjct: 342 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LSKKFPTKNLEECQWFDGCAIERDVETGTLRI 538 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7363.15331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7363.15331.1 >prot_H-paniculata_contig7363.15331.1 ID=prot_H-paniculata_contig7363.15331.1|Name=mRNA_H-paniculata_contig7363.15331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp MTALRFEQSRADPRMFRKVVDGEVETVVVVHADHILAHAKDRAMMWWFATback to top mRNA from alignment at H-paniculata_contig7363:9268..9870+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7363.15331.1 ID=mRNA_H-paniculata_contig7363.15331.1|Name=mRNA_H-paniculata_contig7363.15331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig7363:9268..9870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7363:9268..9870+ >mRNA_H-paniculata_contig7363.15331.1 ID=mRNA_H-paniculata_contig7363.15331.1|Name=mRNA_H-paniculata_contig7363.15331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig7363:9268..9870+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |