mRNA_H-paniculata_contig73474.15317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73474.15317.1
Unique NamemRNA_H-paniculata_contig73474.15317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: A0A7G1K7S9_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mutimo cylindricus TaxID=1948892 RepID=A0A7G1K7S9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.650e-38
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYI+ILPGFGIVSHILSTF+RKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:   80 LYQHLFWFFGHPEVYIIILPGFGIVSHILSTFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 143
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: Q2TQY8_SIPDE (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Siphonochilus decorus TaxID=97764 RepID=Q2TQY8_SIPDE)

HSP 1 Score: 130 bits (327), Expect = 2.160e-37
Identity = 58/64 (90.62%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGI+SHI+STF+RKPVFGYLGMVYAM+SIG+LGF+VWAHHMFT
Sbjct:   86 LYQHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFT 149
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: O99385_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=PX clade TaxID=569578 RepID=O99385_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.890e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:  217 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 280
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: A0A8J5WG91_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WG91_ZIZPA)

HSP 1 Score: 130 bits (327), Expect = 1.310e-36
Identity = 58/64 (90.62%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGI+SHI+STF+RKPVFGYLGMVYAM+SIG+LGF+VWAHHMFT
Sbjct:   26 LYQHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFT 89
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.840e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:  153 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 216
[Close]
BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: M1EYI5_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Fucales TaxID=3009 RepID=M1EYI5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.980e-36
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGIVSHIL+TF+RKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:  201 LYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 264
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BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: A0A452XDY6_AEGTS (Cytochrome c oxidase subunit 1 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XDY6_AEGTS)

HSP 1 Score: 130 bits (327), Expect = 3.410e-36
Identity = 58/64 (90.62%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGI+SHI+STF+RKPVFGYLGMVYAM+SIG+LGF+VWAHHMFT
Sbjct:  149 LYQHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFT 212
[Close]
BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: A0A4P8PC88_9POAL (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A4P8PC88_9POAL)

HSP 1 Score: 130 bits (327), Expect = 3.950e-36
Identity = 58/64 (90.62%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGI+SHI+STF+RKPVFGYLGMVYAM+SIG+LGF+VWAHHMFT
Sbjct:  175 LYQHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGMVYAMISIGVLGFLVWAHHMFT 238
[Close]
BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS)

HSP 1 Score: 132 bits (333), Expect = 6.720e-36
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGIVSHIL+TF+RKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:  201 LYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 264
[Close]
BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 9.250e-36
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 192
            LYQHLFWFFGHPEVYILILPGFGI+SHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT
Sbjct:  257 LYQHLFWFFGHPEVYILILPGFGIISHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFT 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73474.15317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7G1K7S9_9PHAE2.650e-3896.88Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
Q2TQY8_SIPDE2.160e-3790.63Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
O99385_9STRA4.890e-37100.00Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
A0A8J5WG91_ZIZPA1.310e-3690.63Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A0U4ZTN0_9PHAE1.840e-36100.00Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
M1EYI5_9PHAE2.980e-3696.88Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=... [more]
A0A452XDY6_AEGTS3.410e-3690.63Cytochrome c oxidase subunit 1 n=1 Tax=Aegilops ta... [more]
A0A4P8PC88_9POAL3.950e-3690.63Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
M1F017_SARFS6.720e-3696.88Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=... [more]
E6ZES6_ECTSI9.250e-3698.44Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73474contigH-paniculata_contig73474:188..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score131.7
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog70448.Q0P3F1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome C and Quinol oxidase polypeptide I
EggNOG OGs34JUG@3041,37QZZ@33090,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.7513027-CDS-H-paniculata_contig73474:187..3791622930897.7513027-CDS-H-paniculata_contig73474:187..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73474 188..379 -
1691481501.3374846-CDS-H-paniculata_contig73474:187..3791691481501.3374846-CDS-H-paniculata_contig73474:187..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73474 188..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73474.15317.1prot_H-paniculata_contig73474.15317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73474 188..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73474.15317.1

>prot_H-paniculata_contig73474.15317.1 ID=prot_H-paniculata_contig73474.15317.1|Name=mRNA_H-paniculata_contig73474.15317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
LYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSI
GILGFIVWAHHMFT
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mRNA from alignment at H-paniculata_contig73474:188..379-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73474.15317.1 ID=mRNA_H-paniculata_contig73474.15317.1|Name=mRNA_H-paniculata_contig73474.15317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig73474:188..379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTATCAACATTTGTTTTGGTTTTTTGGTCATCCTGAAGTATACATACT
AATTTTACCTGGTTTTGGTATAGTTAGCCATATACTATCGACTTTTGCAA
GGAAACCTGTTTTTGGTTATCTAGGTATGGTCTACGCTATGTTATCTATT
GGTATTTTAGGTTTTATAGTTTGGGCTCATCATATGTTTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig73474:188..379-

>mRNA_H-paniculata_contig73474.15317.1 ID=mRNA_H-paniculata_contig73474.15317.1|Name=mRNA_H-paniculata_contig73474.15317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig73474:188..379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTATCAACATTTGTTTTGGTTTTTTGGTCATCCTGAAGTATACATACT
AATTTTACCTGGTTTTGGTATAGTTAGCCATATACTATCGACTTTTGCAA
GGAAACCTGTTTTTGGTTATCTAGGTATGGTCTACGCTATGTTATCTATT
GGTATTTTAGGTTTTATAGTTTGGGCTCATCATATGTTTACATTGTATCA
ACATTTGTTTTGGTTTTTTGGTCATCCTGAAGTATACATACTAATTTTAC
CTGGTTTTGGTATAGTTAGCCATATACTATCGACTTTTGCAAGGAAACCT
GTTTTTGGTTATCTAGGTATGGTCTACGCTATGTTATCTATTGGTATTTT
AGGTTTTATAGTTTGGGCTCATCATATGTTTACA
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