mRNA_H-paniculata_contig73385.15307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: UPI0006AA84E5 (uncharacterized protein LOC106350832 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA84E5) HSP 1 Score: 66.6 bits (161), Expect = 2.970e-11 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRR-EKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
LLVAVYVDDL+ITG + E +D FK N+S +F M DLG L+ LGIE + NG I+I Q SY ++VL+
Sbjct: 7 LLVAVYVDDLLITGSKTEMIDGFKGNMSNKFEMSDLGLLTYYLGIEV--VQHNGGISIKQASYAKKVLE 73
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A0A9XEM5_LYGHE (Copia protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEM5_LYGHE) HSP 1 Score: 65.5 bits (158), Expect = 8.710e-11 Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 1 LLVAVYVDDLVI-TGRREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
+L+AVYVDDLVI + REK+DE K ++S+ F M D+G ++ LGIE RD+ G + +SQ YI ++LK
Sbjct: 214 ILIAVYVDDLVILSANREKLDELKEDLSRTFEMRDIGKINYCLGIEFSRDKDGGVL-MSQEKYINKLLK 281
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A2J7RGU0_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGU0_9NEOP) HSP 1 Score: 65.1 bits (157), Expect = 1.140e-10 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNG-TITISQGSYIREVLK 204
++VA+YVDD++I G R+ V++ K +SQR ++DLG +S LGI DRPNG I I Q +Y+ E LK
Sbjct: 167 IIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLGPVSNFLGINV--DRPNGYVIKIHQENYVNETLK 233
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A2J7PFT8_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PFT8_9NEOP) HSP 1 Score: 65.1 bits (157), Expect = 1.210e-10 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNG-TITISQGSYIREVLK 204
++VA+YVDD++I G R+ V++ K +SQR ++DLG +S LGI DRPNG I I Q +Y+ E LK
Sbjct: 927 IIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLGPVSNFLGINV--DRPNGYVIKIHQENYVNETLK 993
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A2J7Q727_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q727_9NEOP) HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10 Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNG-TITISQGSYIREVLK 204
++VA+YVDD++I G R+ V++ K +SQR ++DLG +S LGI DRPNG I I Q +Y+ E LK
Sbjct: 1030 IIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLGPVSNFLGINV--DRPNGYVIKIHQENYVNETLK 1096
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A2U1MFK9_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MFK9_ARTAN) HSP 1 Score: 64.7 bits (156), Expect = 1.680e-10 Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRR-EKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
L++AVYVDDL++TG + ++ EFK + +RF M DLG LS LGIE +++ + +I+ISQ SY +++LK
Sbjct: 1077 LIIAVYVDDLLVTGSKLGEIGEFKRQMQERFDMSDLGKLSYYLGIEVKQE--DSSISISQESYAKKILK 1143
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 63.9 bits (154), Expect = 3.110e-10 Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LLVAVYVDDLVITG-RREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
L + +YVDD++I ++++ E K +S F M+DLG+ ++LG+E RRDR G +T+SQ YI +VLK
Sbjct: 958 LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLK 1026
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A699I3C7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I3C7_TANCI) HSP 1 Score: 63.2 bits (152), Expect = 5.730e-10 Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 LLVAVYVDDLVITG-RREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
L + +YVDD++I ++++ E K +S F M+DLG+ R+LG+E RRDR G +T+SQ YI +VLK
Sbjct: 488 LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKRILGMEIRRDRKMGKLTLSQIDYILKVLK 556
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.080e-9 Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 7 VAVYVDDLVITGRREK-VDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVLK 204
+ +YVDDL++ G + + K ++QRF+M D+G + VLG+E +RDR GT+TISQ +Y + +L+
Sbjct: 652 LTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILE 718
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 61.2 bits (147), Expect = 1.810e-9 Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 LLVAVYVDDLVITGRREK-VDEFKHNISQRFRMEDLGSLSRVLGIEARRDRPNGTITISQGSYIREVL 201
L+VAVYVDDLVI+G + V EFK +++ ++ + D G L+++LGI+ RD+ N +SQ S+I++ L
Sbjct: 117 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDAL 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73385.15307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig73385.15307.1 >prot_H-paniculata_contig73385.15307.1 ID=prot_H-paniculata_contig73385.15307.1|Name=mRNA_H-paniculata_contig73385.15307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp LLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLGSLSRVLGIEARRDRback to top mRNA from alignment at H-paniculata_contig73385:14..223+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig73385.15307.1 ID=mRNA_H-paniculata_contig73385.15307.1|Name=mRNA_H-paniculata_contig73385.15307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig73385:14..223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig73385:14..223+ >mRNA_H-paniculata_contig73385.15307.1 ID=mRNA_H-paniculata_contig73385.15307.1|Name=mRNA_H-paniculata_contig73385.15307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig73385:14..223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |