mRNA_H-paniculata_contig7316.15287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7316.15287.1
Unique NamemRNA_H-paniculata_contig7316.15287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A6H5LFZ8_9PHAE (Diaminopimelate epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LFZ8_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 4.300e-126
Identity = 174/210 (82.86%), Postives = 191/210 (90.95%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVIDE-HTKVGI 627
            VPF KYQGLGNDFILVDNR+  EP+LTA ESA LCDRRYGIGGDGVIFALPG + +DY+MRIINSDG+EPEMCGNGIRCMARFLADLEGK  AEYKIHTLAGTIIP+AREDGLVTVDMGPPELNGPKVP+TLP N DGVVL+ P+K+D KDWEVTCVSMGNPHAVVFVPD+D LDLP +GPQFETHPSFPAKINTEFVQV++  H K+ +
Sbjct:   55 VPFSKYQGLGNDFILVDNREEAEPMLTAEESASLCDRRYGIGGDGVIFALPGSDDMDYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPLAREDGLVTVDMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKDWEVTCVSMGNPHAVVFVPDVDALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVV 264
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A7R9YC33_9STRA (Diaminopimelate epimerase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC33_9STRA)

HSP 1 Score: 288 bits (736), Expect = 9.360e-95
Identity = 139/216 (64.35%), Postives = 167/216 (77.31%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAE--YKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNAD-GVVLRSPMKID---DKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVIDE-HTKVGI 627
            V F KYQGLGNDF+LVDNRD EEP+LT  ES  LCDR +G+G DGVIFA+PG++G DY+MRI NSDG+EPEMCGNGIRCMA+FL DL+G + AE  YKI TLAGT++P     G++TVDMG PEL GP+VPTTL P  D   V+ +PM       KDW+VTCVSMGNPH + FV DLD +DL AVGPQFE HP FPA++NTEFVQV+ + H K+ +
Sbjct:   33 VAFSKYQGLGNDFLLVDNRDAEEPILTPDESEALCDRHFGVGADGVIFAMPGRDGCDYSMRIYNSDGSEPEMCGNGIRCMAKFLQDLDGSSGAEKQYKIWTLAGTMVPTVVASGMITVDMGEPELRGPEVPTTLKPTRDDSAVIDAPMAAPLPGGKDWKVTCVSMGNPHCITFVDDLDAVDLAAVGPQFENHPVFPARVNTEFVQVLSKSHLKMKV 248
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A835YU85_9STRA (Diaminopimelate epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU85_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.520e-93
Identity = 136/208 (65.38%), Postives = 164/208 (78.85%), Query Frame = 1 
Query:    7 FRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVIDE-HTKVGI 627
            F KY+GLGNDFILVDNR+  +P+L+  +SA LCDR +GIGGDGVIFALPG+  LDY MRI NSDG+EPEMCGNGIRCMARFLADL+G+  A Y+I T AG I+PV    GLVTVDMGPPELNGPKVPTTLP  ADG V+ +P+++  + W VTCVSMGNPHA+VFV DL+ + L  +GP FE +  FPA+ NTEFVQV+   H K+ +
Sbjct:   28 FHKYEGLGNDFILVDNRETADPVLSPEQSAKLCDRNFGIGGDGVIFALPGEGDLDYKMRIYNSDGSEPEMCGNGIRCMARFLADLDGEKEATYRIGTGAGLIVPVVGGGGLVTVDMGPPELNGPKVPTTLPTGADGAVVAAPLEVAGQQWSVTCVSMGNPHAIVFVNDLNTIKLADIGPLFEHNAVFPARTNTEFVQVLSRSHLKMKV 235
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A7S2S1Q0_9STRA (Diaminopimelate epimerase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1Q0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 2.770e-92
Identity = 135/202 (66.83%), Postives = 160/202 (79.21%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAE--YKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQV 600
            V F+KY GLGNDFILVDNR   +P+++  ++A +CDR +G+GGDGVIFALP  E  DY MRI NSDG+EPEMCGNGIRCMARFL  L+G    E  Y I+T AG IIPV R DGLVTVDMGPP L GPKVPTTL P    VV+ +P+++ D+DWEVTCVSMGNPHAVVF+ ++D LDL  VGPQFE+HP FPA+INTEFV+V
Sbjct:   50 VAFQKYHGLGNDFILVDNRHSTDPVMSPEQAARMCDRNFGVGGDGVIFALP-SESADYAMRIYNSDGSEPEMCGNGIRCMARFLQKLDGSEGTETTYTINTGAGPIIPVIRGDGLVTVDMGPPILEGPKVPTTLAPTQGDVVINAPLRVADQDWEVTCVSMGNPHAVVFIDNVDSLDLHHVGPQFESHPEFPARINTEFVEV 250
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A7S2HNF9_9STRA (Diaminopimelate epimerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HNF9_9STRA)

HSP 1 Score: 271 bits (693), Expect = 4.550e-88
Identity = 139/215 (64.65%), Postives = 166/215 (77.21%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEG-LDYTMRIINSDGTEPEMCGNGIRCMARFLADLEG--KTAAE-YKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPN-ADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVIDE-HTKVGI 627
            V F KYQGLGNDFIL+DNRD  EPLLT  ++  +CDR +G+GGDGVIFALP  E   DY MRI NSDG+EPEMCGNGIRCM +F+  +EG  +TA E Y I T AG IIP  REDGLVTVDMG P L G KVPTTL P  +DG+VL +P+++  ++W VTCVSMGNPHA+VFV DL+ +DL +VGP FET+P FPAKINTEFVQV+D  H K+ +
Sbjct:   43 VEFEKYQGLGNDFILIDNRDDPEPLLTPAQAERMCDRNFGVGGDGVIFALPASEAESDYRMRIYNSDGSEPEMCGNGIRCMTKFIQKIEGGAETAKESYHISTGAGPIIPKIREDGLVTVDMGFPILEGSKVPTTLQPTKSDGMVLDAPLEVMGQEWLVTCVSMGNPHAIVFVDDLEAVDLNSVGPVFETNPVFPAKINTEFVQVLDPTHLKMKV 257
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: UPI001F445AEF (diaminopimelate epimerase n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F445AEF)

HSP 1 Score: 262 bits (669), Expect = 4.400e-85
Identity = 123/204 (60.29%), Postives = 150/204 (73.53%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGK---TAAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVI 603
            + F KY GLGNDFIL+DNR    P LTA E+   CDR +GIG DGVIFALPG++G DYTMRI NSDG+EPEMCGNGIRC+ARF+ADLEGK    +  Y+IHTLAG ++P    DGLVTVDMG P L   ++PTTL    D  V+  P+++  + W VTCVSMGNPH + FV D+  + L A+GPQFE HP+FP K NTEF+QV+
Sbjct:    3 IEFTKYHGLGNDFILIDNRGSTTPRLTAEEAVRWCDRHFGIGADGVIFALPGQDGTDYTMRIFNSDGSEPEMCGNGIRCLARFIADLEGKEPNASVTYRIHTLAGVMMPQLEPDGLVTVDMGEPRLLAAEIPTTLS-QPDEKVINQPLEVAGQSWSVTCVSMGNPHCITFVEDVAAIPLEAIGPQFECHPAFPKKTNTEFIQVV 205
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: UPI0019EF3AFD (Diaminopimelate epimerase n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019EF3AFD)

HSP 1 Score: 261 bits (668), Expect = 6.040e-85
Identity = 124/202 (61.39%), Postives = 152/202 (75.25%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAE-YKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVI 603
            + F KYQGLGNDFILVDNRD  EP +T  ++  LCDR +GIGGDGVIFALPG++G DY MRI NSDG+EPEMCGNGIRCMARF+ADLEG  A E YKIHTLAG I+P    DG VTVDMG P L   ++PTTL  +A    +  P+++  + W+VTCVSMGNPH + FV  +  +DL  +GPQFE+  +FP KINTEF++V+
Sbjct:    3 LEFTKYQGLGNDFILVDNRDSTEPKVTPEQAVKLCDRHFGIGGDGVIFALPGQDGTDYMMRIFNSDGSEPEMCGNGIRCMARFIADLEGDNAKESYKIHTLAGLIVPKLTADGQVTVDMGQPRLQASEIPTTLT-DAQQQSVNQPLEVAGQSWQVTCVSMGNPHCITFVDSVAAIDLEKIGPQFESDAAFPKKINTEFIEVV 203
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BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: DAPF_ACAM1 (Diaminopimelate epimerase n=4 Tax=Acaryochloris TaxID=155977 RepID=DAPF_ACAM1)

HSP 1 Score: 261 bits (667), Expect = 9.760e-85
Identity = 127/204 (62.25%), Postives = 151/204 (74.02%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGK---TAAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVI 603
            V F KYQGLGNDFIL+DNR + +P LT  ++  +CDR +GIGGDGVIFALP +   DYTMRI NSDG+EPEMCGNGIRC+ARFLA LEGK   T   Y+IHTLAGTI P  + DGLV VDMGPP L   ++PTTL    D VV   P+++  + W VTCVSMGNPH + FV DL+ +D   +GPQFE HP FP +INTEF+QVI
Sbjct:    3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKVDMGPPFLVPQEIPTTLGEGTDPVV-NQPLEVAGQSWPVTCVSMGNPHCITFVDDLEAIDFQTLGPQFEHHPVFPQRINTEFIQVI 205
[Close]
BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A1D8TLX1_9CYAN (Diaminopimelate epimerase n=28 Tax=Moorena TaxID=1155738 RepID=A0A1D8TLX1_9CYAN)

HSP 1 Score: 259 bits (663), Expect = 3.820e-84
Identity = 123/202 (60.89%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKT-AAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVI 603
            + F KY GLGNDFIL+DNRD  EP +T+ ++  LCDR +GIG DGVIFALPG+EG DYTMRI NSDG+EPEMCGNGIRC+ +FLADLEG      Y+IHTLAG IIP  + DG V VDMG P+L+  ++PT L   AD  V+ +P++I DK WEVTCVSMGNPH + FV D D + L  +GP FE H  FP + NTEF+QV+
Sbjct:    3 MEFTKYHGLGNDFILIDNRDDPEPRITSDQALQLCDRNFGIGADGVIFALPGQEGTDYTMRIFNSDGSEPEMCGNGIRCLGKFLADLEGDNHKTHYRIHTLAGVIIPELKGDGKVRVDMGMPQLSAAQIPTVLA-EADQKVINTPIEIADKLWEVTCVSMGNPHCITFVEDADAIPLETIGPLFEHHSVFPQRTNTEFIQVV 203
[Close]
BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Match: A0A6T5Q8N6_HETAK (Diaminopimelate epimerase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q8N6_HETAK)

HSP 1 Score: 261 bits (667), Expect = 4.470e-84
Identity = 126/212 (59.43%), Postives = 156/212 (73.58%), Query Frame = 1 
Query:    1 VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFALPGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKT--AAEYKIHTLAGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDKDWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQVID-EHTKVGI 627
            + F KY+GLGNDFILVDNR+  EP +T  ++  LC+R +GIGGDGVIF LPG++G D+TMRI NSDG+EPEMCGNGIR   +++A LEGK      Y  HTLAG II     DGLV VDMG P      +PTTL  N DG VL  P+++D K +EV+CVSMGNPHA+VFV DLD+LDL  VGP FE HP+FPA++NTEFVQV+  +H K+ +
Sbjct:   52 ISFSKYEGLGNDFILVDNRESMEPKITPDQAIKLCNRNFGIGGDGVIFVLPGQKGTDFTMRIFNSDGSEPEMCGNGIRVFTKYIAKLEGKENEPVRYTFHTLAGEIIGDVTADGLVRVDMGFPIFKAADIPTTLAENEDGYVLNQPLEVDGKTYEVSCVSMGNPHAIVFVDDLDQLDLYKVGPIFEKHPAFPARVNTEFVQVLSRDHLKMKV 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7316.15287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LFZ8_9PHAE4.300e-12682.86Diaminopimelate epimerase n=2 Tax=Ectocarpus TaxID... [more]
A0A7R9YC33_9STRA9.360e-9564.35Diaminopimelate epimerase n=2 Tax=Pinguiococcus py... [more]
A0A835YU85_9STRA1.520e-9365.38Diaminopimelate epimerase n=1 Tax=Tribonema minus ... [more]
A0A7S2S1Q0_9STRA2.770e-9266.83Diaminopimelate epimerase n=2 Tax=Rhizochromulina ... [more]
A0A7S2HNF9_9STRA4.550e-8864.65Diaminopimelate epimerase n=1 Tax=Dictyocha specul... [more]
UPI001F445AEF4.400e-8560.29diaminopimelate epimerase n=1 Tax=Leptodesmis sich... [more]
UPI0019EF3AFD6.040e-8561.39Diaminopimelate epimerase n=1 Tax=filamentous cyan... [more]
DAPF_ACAM19.760e-8562.25Diaminopimelate epimerase n=4 Tax=Acaryochloris Ta... [more]
A0A1D8TLX1_9CYAN3.820e-8460.89Diaminopimelate epimerase n=28 Tax=Moorena TaxID=1... [more]
A0A6T5Q8N6_HETAK4.470e-8459.43Diaminopimelate epimerase n=2 Tax=Heterosigma akas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7316contigH-paniculata_contig7316:4751..11288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.4
Seed ortholog evalue1.1e-99
Seed eggNOG ortholog2880.D7G034
KEGG rclassRC00302
KEGG koko:K01778
KEGG ReactionR02735
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.diaminopimelate epimerase activity
EggNOG OGs2QQKJ@2759,COG0253@1
Ec32 ortholog descriptiondiaminopimelate epimerase
Ec32 orthologEc-06_009100.1
EC5.1.1.7
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons5
Model size630
Cds size630
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7316.15287.1prot_H-paniculata_contig7316.15287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7316 4751..11288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.5238953-CDS-H-paniculata_contig7316:4750..48601622930893.5238953-CDS-H-paniculata_contig7316:4750..4860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 4751..4860 +
1691481499.6498966-CDS-H-paniculata_contig7316:4750..48601691481499.6498966-CDS-H-paniculata_contig7316:4750..4860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 4751..4860 +
1622930893.5467532-CDS-H-paniculata_contig7316:7126..72231622930893.5467532-CDS-H-paniculata_contig7316:7126..7223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 7127..7223 +
1691481499.6665766-CDS-H-paniculata_contig7316:7126..72231691481499.6665766-CDS-H-paniculata_contig7316:7126..7223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 7127..7223 +
1622930893.568974-CDS-H-paniculata_contig7316:8177..82911622930893.568974-CDS-H-paniculata_contig7316:8177..8291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 8178..8291 +
1691481499.6774313-CDS-H-paniculata_contig7316:8177..82911691481499.6774313-CDS-H-paniculata_contig7316:8177..8291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 8178..8291 +
1622930893.587877-CDS-H-paniculata_contig7316:8978..90951622930893.587877-CDS-H-paniculata_contig7316:8978..9095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 8979..9095 +
1691481499.688423-CDS-H-paniculata_contig7316:8978..90951691481499.688423-CDS-H-paniculata_contig7316:8978..9095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 8979..9095 +
1622930893.607946-CDS-H-paniculata_contig7316:11096..112881622930893.607946-CDS-H-paniculata_contig7316:11096..11288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 11097..11288 +
1691481499.7027428-CDS-H-paniculata_contig7316:11096..112881691481499.7027428-CDS-H-paniculata_contig7316:11096..11288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7316 11097..11288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7316.15287.1

>prot_H-paniculata_contig7316.15287.1 ID=prot_H-paniculata_contig7316.15287.1|Name=mRNA_H-paniculata_contig7316.15287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
VPFRKYQGLGNDFILVDNRDREEPLLTAGESAHLCDRRYGIGGDGVIFAL
PGKEGLDYTMRIINSDGTEPEMCGNGIRCMARFLADLEGKTAAEYKIHTL
AGTIIPVAREDGLVTVDMGPPELNGPKVPTTLPPNADGVVLRSPMKIDDK
DWEVTCVSMGNPHAVVFVPDLDKLDLPAVGPQFETHPSFPAKINTEFVQV
IDEHTKVGI*
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mRNA from alignment at H-paniculata_contig7316:4751..11288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7316.15287.1 ID=mRNA_H-paniculata_contig7316.15287.1|Name=mRNA_H-paniculata_contig7316.15287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6538bp|location=Sequence derived from alignment at H-paniculata_contig7316:4751..11288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCGTTTCGGAAGTATCAAGGCCTAGGAAATGATTTCATCCTGGTTGA
CAATCGTGACCGGGAAGAGCCGTTGCTAACAGCAGGAGAATCTGCTCACC
TGTGCGACAGGTGTGGGGGGGGCAGCAAGTCAAGAGTTGAATCGGAGATG
TATAAACTACAGTAATGGAAGATGACAAAAACCGTACAACAAAATGGAGG
TATGGTTAGCATCTTCAAGTTGCTGCGTTACTTATCCCCAAATTCAAAAA
GCTAGAGAAGGCCTGCTGTACTGTACTGTACTGTACTGCATTGCACTCAC
GGAAAAAACTACTAGAGCGTCGAGTTTGTTGACTTTTTTCGAGCACCAGG
AATGTGCCATGCACCACTTGGTCACAATCCATATTTGAAATTTTCCATTA
TATAGTGGGAAGGTACCCCGAATATTGGGGCGGGGGTGGTGAGTGAGGAC
TCGCCAAAAATGCTCGCCATGAATCCACGATCGCCTCTGGCCAATTTGCC
CCGCCTCAAGTCTGTTTTCACCTTTAATTGTGCTACTCACTGTATACCAT
GCCTTCTGCATTGAGAGTCCCGAATACTGGGCATACCGAAAGAGGAAGGG
CTGCGTATCGTTCATTTGAAAGCAATACAAGTATATCGATCGGTCGGTGA
ATTCGATATACCGATACAATGCCAAAATATCGGCTGAGGCCAATATTTTC
GTAACTTATCGAGCCAGCCGCGCAGAACGCCTGGCGGGCGGCTTGCCGCG
AGCCCTAACGCCCCTCCCTTGCTAGTGAGGGAGGCTTCTTATTATATACG
GATCTCTGGATTTGGTGTTGATTGCGCAGTCTTGGGGCGTAGGGCGGCAG
GTTTAGTACCTGCATCCAACGCACACTAGGCTTTACGTGTCAGGGTTGGC
GATGGTAGTGGGGCTGGGTTAGGTTGTTACGTATAACTTATAACTTTTGA
ACTGTCTAAAGAACCGTGTAAAGGTCCCTGTACGAGAAAGGCACCCGAGA
TGGTCCACTGGCCTCAGTCTGTGGTCCGCTTTTATCATCGCCTCATGGGT
GTAGTTGTATGAGGCTATCGGGGCAGGCGTTTTATTGCAGCCACAATTTC
CGCGGCATTAGCTTCTTGCCATCGCGAAAGCTACAAATCAAGCACAAAAA
TTGTTCCGACTCACAACTGCGATTTTTTCCCCAGTTAGACACAAAAAATT
TATCGCAGAGTTTCTCCAGTTATAGAAAATAAACCAAAAATAGATGTATC
GGTCGGTCAACTAATCACGTGAATGAACGAATGCAGTGCCACCACGGACA
CGTTTTCACCACATGTGTTTGATATATATATATATAAGTATATTTTGATA
ATCTTGTTAATCTTCGTGTTTGGGAAATATTTCCTTTTTTGAATAATTTA
GATGCTTACTGTTTATTATCGACTTCTTTTTTTCAAGTGTTGTATTGTAT
GTATCCGTGGGATTGGTATTTTTTGTTGAACGATTATAAAATAGATTTTA
GGGTAACAGAAATAATATTATTGTCAGATATTAAAGGTTTTAATATTTTT
CAGTTTACCCGTTCTTGTGATTTATCTTGTGTAGAAAGTATATATATATG
CACACGTAAATAATTCGCGTTCCTGTCGAAATTTGACCGGGTTTTTTGCC
TCGTTAGGCGCGTTGTAAGTGGGAATGCTGATTGCTGTCACGACAGTTTT
TGAATTTGATGGGGGTAAAACCGTTCTAAGAAAAAGACAATGAGGCCCTG
CGCAGCAGCAGTATCGAATAAGAAATGGCCTTATCTCCCCCCCCCCCCTA
CCAACTATTTAAACAACTGTCCATATAACATGTGACGTTTCATCCAGGGT
CATATGAACATTTAATGGCTGATTTTTTTCATTCTAATAGTTTGATTAAC
TTGATACAACCAACTTTTTATGTAGGATTTGCTCCTGCGATGAAGGTTGC
AAAATGGTGGATGGATTAGGGGGGTAAGTGGACGAATCGGTAACAGCCTT
TCTTGTATAGTAGAAGGGCATTAAAAAAAAAATATATATATATATATATA
TGTCGATATTATTCACTCTACACTAACCCCCCCCCCAAAAAAAAAAAAAA
AAACGTTGTTCGCTGCTGCTTGCACCCGCCCTTCCGGTCAGGCCCTGTCC
TAACAACCCTCCGATGCCTCATTAGACAGTGTGACGCGTTTTGTCACGGT
CTTTTAGCAAGCGAAGACATGTCTCTCAGTATTTGTCGTGATGTGATCGA
AATGGCTTCCACCGTTTCACGTGACGTACGAAGTATGAAACGTTTTTGTT
TTTTGATTGCAACTGGTATCCATTTTATTTGTTCGTTTCTCCGTTTGCTT
TCTTCCTTCGCTTTCCGTTGTCAAAGGCGTTATGGGATCGGGGGAGACGG
GGTAATTTTTGCGCTTCCTGGAAAGGAAGGCTTGGACTACACCATGCGCA
TTATCAACTCCGACGGTACCGAGGTAGGTCTGGGCTCTTTGCTGTCATGT
CTCATGCATCAAGTATTGTATCAAGTACTACAACGACAAGAAGGGTAGGT
GGACACAAACCTAGCCTTTTCTCCAAAGATCCTGGCGTCCATAGGATAAG
TAATTGTATCCCCCCCCCCGTCCTCGTCCTTTCCTTATACTGCCTCGTGC
TCTCCCTGATGAACGGGCAGCGTTCTAACAACTATGGCTTGCAGACATGC
GTACACGTATGAGTGTGACCCTCCCTCCTCCCGCGCCGATAGTGAAAACC
GTATACTTGTTCTGTCGGTGCTCCGGAAGGAGACGATGTGCGCATGAGTT
ATTCTCCAAGTGTTATTCACCACGGATTGAAAATATGGTGCTCACTGTTT
TGTGGCGTGGCGTTGTTTCACATGGTCGCGAAAATCGAAGCGCCGTGCGG
TACTGAGGGTATCAGCCACGGTTGCTCTATACGAAACGTTTTGTTACCCA
GGATGCCGACGAAAACCTATGGCAAAATCCGATCAGGCCGTATCGTAGTA
ACACAAGGATGGTGGCTACCTGGCCAGCTGGTGCAGGGTCACCGTTGTCA
AACGTAGCAGGCAAAACTCCGGCATAGGGTAGATCCATCCCTTGTGACCA
AGGTATGCGCACCATGACTATCCCCGCCCCTTTTTTGGTCATGGTGTAGT
TTGGTGGCAAACACGCACAACTAAGATTTGAGGTCAGCTGCATAGCCTCA
ACAAGAATACATTTGACAATAATTGTATGAGCATCATCGTGTTAAGCGGT
TGAGAATCCCTCCTTCCCAGGTCGCCGTAAAATATAAATTTTGCTGCGGA
AAACAGGGGATTTAATCCCAGCGTACCCGTCTGGGTAAGTTTTGGAGTTT
TTCATGCATCTCTTCTCGTTACAGAGACTGCTGCGTTACTTCCTCTGTCC
CCGTTGCCCGTCAACAACGTCGCGCAGCCCGAGATGTGTGGGAACGGGAT
CCGGTGCATGGCGAGATTTTTGGCAGATTTGGAGGGCAAGACCGCTGCTG
AGTACAAGATCCACACGTTGGCGGGGACCATCATCCCCGTGGTGAGCTTC
TGGTTTATTTACCGTGCCTGTGTTTTTTTTTTTCCTTCATGAAATAGGTG
GGTTTTGTCTACACGCAGCATCTCAAGTACCCTTGTATAACGTATTGCGA
TATAGAGTGTACGTCAAATTTTGCTTGGGCGAACCTTTTTCGGAATTCAG
GGGTTAGTTAGGGTAGGGACCGAGTTTTTGTGAAAAATGTTTCATTAATA
ACAAGCCCTGGAAATTGAGTTGAAATCTCTGCTGGAATCGATTGGCCGAT
CACGGCGAAAACAAAAGACTTTTCAACCATGTGACAACCCCACACGGACC
TACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGCATGGCTGGAAGTAT
AGTCAGAGGTCTTGTAGTGGGTACAACCCCCACACTGCCTACCTGGTTCA
GCCGAACCGGGGTGACGCCTACCCCGCAGAGGAACAAATAACTCTGCTCT
GTTAAAGGAAATATAGAAATATTTCGGTAGAAATATTGAAGTATGGAAGC
ATCAGATAAAGGGTTTTGCCTTAGCCTTCTGGGCGTTAAAAGAACAAATC
AATGACACACCCTAGATATAGTTATTTAATTGAATCTTTGTGGGAATTGA
TTAATTGGTCTGGGTCAGACAATCCCTTCGTATTCGATGCGCGCTTTTGG
CGGTATTGCTTGGCCGATTTTTCCGCAGGCACGAGAAGATGGTCTGGTGA
CGGTGGACATGGGGCCTCCAGAGCTGAACGGGCCAAAGGTACCGACCACC
CTCCCACCGAACGCTGACGGTGTTGTGCTCAGGTCCCCGATGAAGGTGCA
ACGACTAAGTGACGACGTTAGTTGTGTTGAGAACAAATGTTAATCAGAAG
AATGAACCAATCGTCACTAACAACCATTGCTTTTTACCATCGCGTATCGG
CTATTGCGCTTGTCTTCATTACATGAACGCGATTTGTAACAACTTTACCC
CCCCCCCCCCCCCCCCTGTAATTATCTCGTACTATCATTATTTGTCTTTT
GGGTAAACACGTACTTATTCGTTTACAAGAAGTCTATGAATGGTCACTCT
ACAGACGGTCACCAGGTGGTCGTATACCCGGCGAACAGTCACACATGCAG
ATCCTGTTTATTTATTCCGGGTTGTACTGTACAGATTGAATATTCTATCT
ACCCGAGCGTTTCGATGCTCCATGGTATATCCTCCCCAACTCCAACAAAT
ACAGTATTCATTCCAGATTTCTCGTAGTTATTCGTGTCTCGTATTCGTAG
TTGTCCGGGGGGTGAAGAGATTGGAATAGCCAGTTTAAAACCATACCATA
AAATTAGCTTGTGAGTGATGCAAGATTCAGACGTTTAACCCTCCAGGAAT
CGGTTCGACTTCGTATTGGTCAAGAGATAGATTTGCTAACAACCAGTTGA
TAATAATGACAAATACGTCAGCAAAAGGGGGGTAATGGTTTGCCGTTCTG
AGGTATTTTGCCTTAGATTTAGTGTAGAGCAAGAATAGGCTATTGTAGAA
ATACTTCGGTAAAATAATTAAGTATGGAAGCATCGGATAAAGGTTTTTGC
CTCAGCCTTCCGGGGGTTAAAAAAAACAAGAAACATTGGCTATTTTCGTA
ACGATTGAATAGCATAGAAGCACTCCACGGCTGATTAATGATTCGGAAGT
ACCTAGCGAGTCAACTATCTGTGTTAGTTGACGTTTCTTTTCTTTTATTA
TACAACTAAACATATATACACCGACTTGAAGAGCATGTTGCTGACCCGCC
GGGGTTCTCAAGTCCCTATCCCTTAGCTGCTGCGCAAACGTCCAGTCACG
TGTTTGCCTCGTTGTTGGACCACCTTGTTGTAACGCTCGCGGACGGGCCC
CTAGCGGATCGCTCCTGTTGAAGACGCCGAAGTTGTGTGTCCTCCACACC
TGGGCCCGACCTTCCTGCTTGCTCAAAGCAAGTCTTTGGGGGTGACCCAG
CTAACTAACTACTAGTGACGTGTCCTGCAGTCGCGGTGTGTTACATCCTC
AAGTCATTTCCAAGTTTCTCTTCCGGGAACAGCAGTCATTCATCTTACCT
AGGTCATCTTTATTGACGACCACAGTGAGAAATGAAAACGGGCAGGGATG
GGGCAGGTAGAGCCAGTAAGCCCAAATGATTAAGTAGCCTGGGACAGCCA
TCTGCAATTATACAAAAGTGACGTGCGATTTCGGGAAACGGAATACCCTT
CAAAGCACCCAACTTTCTCAAGCACTCTTTCCAAAAACCACAATCCACAG
CTTGCAGATATCCGATCTATTATACTAACCGTAGAATTTCAGTACCGGTA
GTCGCACTCTCGGAGACTTACATCCTGGTCCGGCCCGAAGTATTCTACTC
AGTATGCGTTAGTAGTAACAGTTACACGAACGGAAATGATGAGGTACCTC
CAAGCACACCCGCTCTTGGAGTACAAAGCACCACATGGTACACGCCGGAG
CCTTCTCAATTCCAATCCGCTTTCACGACGTTACAATGGCCTTACACAAG
CACTGTTTTTTTTTTTTTTTTGCGTCTCTCCAACAGGCAGGAAAATTGAG
TTCAATTTTCGTACTATTGTGACTTGGGAGAAGTCGAGCTTATCCACATT
CCACACTACATCCGTGAACCTAGAGTCAACGCCAGTACCCGGACACACCC
GTCGCGAGAGCCAGTCTCGGGTGGAAGGACCCTCGTGCTTTTAAAATATA
TTACTCCTCGGAGGCGACAGCATTTGTTTTTCTTCGATCCCTTGCGCCAC
CTTACGTCTTATCGCTTGCTGCTGCTGCTGTTTCCGAGGGAGACAGATAG
ATGACAAAGACTGGGAAGTGACGTGCGTGAGCATGGGCAACCCACACGCG
GTCGTGTTTGTCCCGGACCTTGATAAGTTGGATTTGCCGGCCGTCGGCCC
TCAGTTCGAGACCCATCCCTCCTTCCCGGCCAAGATCAACACGGAGTTTG
TGCAGGTGATTGATGAACATACCAAGGTTGGCATTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7316:4751..11288+

>mRNA_H-paniculata_contig7316.15287.1 ID=mRNA_H-paniculata_contig7316.15287.1|Name=mRNA_H-paniculata_contig7316.15287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig7316:4751..11288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCGTTTCGGAAGTATCAAGGCCTAGGAAATGATTTCATCCTGGTTGA
CAATCGTGACCGGGAAGAGCCGTTGCTAACAGCAGGAGAATCTGCTCACC
TGTGCGACAGGTGCCGTTTCGGAAGTATCAAGGCCTAGGAAATGATTTCA
TCCTGGTTGACAATCGTGACCGGGAAGAGCCGTTGCTAACAGCAGGAGAA
TCTGCTCACCTGTGCGACAGGCGTTATGGGATCGGGGGAGACGGGGTAAT
TTTTGCGCTTCCTGGAAAGGAAGGCTTGGACTACACCATGCGCATTATCA
ACTCCGACGGTACCGAGGCGTTATGGGATCGGGGGAGACGGGGTAATTTT
TGCGCTTCCTGGAAAGGAAGGCTTGGACTACACCATGCGCATTATCAACT
CCGACGGTACCGAGCCCGAGATGTGTGGGAACGGGATCCGGTGCATGGCG
AGATTTTTGGCAGATTTGGAGGGCAAGACCGCTGCTGAGTACAAGATCCA
CACGTTGGCGGGGACCATCATCCCCGTGCCCGAGATGTGTGGGAACGGGA
TCCGGTGCATGGCGAGATTTTTGGCAGATTTGGAGGGCAAGACCGCTGCT
GAGTACAAGATCCACACGTTGGCGGGGACCATCATCCCCGTGGCACGAGA
AGATGGTCTGGTGACGGTGGACATGGGGCCTCCAGAGCTGAACGGGCCAA
AGGTACCGACCACCCTCCCACCGAACGCTGACGGTGTTGTGCTCAGGTCC
CCGATGAAGGCACGAGAAGATGGTCTGGTGACGGTGGACATGGGGCCTCC
AGAGCTGAACGGGCCAAAGGTACCGACCACCCTCCCACCGAACGCTGACG
GTGTTGTGCTCAGGTCCCCGATGAAGATAGATGACAAAGACTGGGAAGTG
ACGTGCGTGAGCATGGGCAACCCACACGCGGTCGTGTTTGTCCCGGACCT
TGATAAGTTGGATTTGCCGGCCGTCGGCCCTCAGTTCGAGACCCATCCCT
CCTTCCCGGCCAAGATCAACACGGAGTTTGTGCAGGTGATTGATGAACAT
ACCAAGGTTGGCATTTAGATAGATGACAAAGACTGGGAAGTGACGTGCGT
GAGCATGGGCAACCCACACGCGGTCGTGTTTGTCCCGGACCTTGATAAGT
TGGATTTGCCGGCCGTCGGCCCTCAGTTCGAGACCCATCCCTCCTTCCCG
GCCAAGATCAACACGGAGTTTGTGCAGGTGATTGATGAACATACCAAGGT
TGGCATTTAG
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