mRNA_H-paniculata_contig7299.15265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7299.15265.1
Unique NamemRNA_H-paniculata_contig7299.15265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7299.15265.1 vs. uniprot
Match: D8LEK1_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.220e-9
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 RNHRLVFWAVATDDATFKAVLLGLKVAGLILMTTAIIYGTETAAGLDDGSMAFNEDDMKWH 183
            RNH+L+      DD T KA LL +KV G+++MT+AI+YG E      +G+ AFNE   +WH
Sbjct:   98 RNHKLLASIFPNDDVTIKATLLIVKVIGVVMMTSAILYGVERGLTDGEGTGAFNEPGWQWH 158
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BLAST of mRNA_H-paniculata_contig7299.15265.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.060e-9
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 RNHRLVFWAVATDDATFKAVLLGLKVAGLILMTTAIIYGTETAAGLDDGSMAFNEDDMKWH 183
            RNH+L+      DD T KA LL +KV G+++MT+AI+YG E      +G+ AFNE   +WH
Sbjct:  160 RNHKLLASIFPNDDVTIKATLLIVKVIGVVMMTSAILYGVERGPTDAEGTGAFNEPGWQWH 220
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BLAST of mRNA_H-paniculata_contig7299.15265.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.490e-8
Identity = 32/68 (47.06%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:    1 RNHRLVFWAVATDDATFKAVLLGLKVAGLILMTTAIIYGTETA-------AGLDDGSMAFNEDDMKWH 183
            RNHR++       D T  A LLGLK+ GLILMTTAIIYGTE A          DD     +   M+WH
Sbjct:  104 RNHRMLEKIGTFTDVTVNACLLGLKILGLILMTTAIIYGTEQAFKDETDGKAFDDSGTIEDSGTMQWH 171
[Close]
BLAST of mRNA_H-paniculata_contig7299.15265.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.830e-7
Identity = 33/68 (48.53%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:    1 RNHRLVFWAVATDDATFKAVLLGLKVAGLILMTTAIIYGTETAAGLDDGSMAFNEDD-------MKWH 183
            RNHR +       D T  A LLGLK+ GLILMTTAIIYGTE A   D+   AF           M+WH
Sbjct:  145 RNHRTLEKIGTFTDVTVNACLLGLKILGLILMTTAIIYGTEQAFKGDEDGKAFXXXXXXXXXXXMQWH 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7299.15265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEK1_ECTSI6.220e-945.90Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQ48_9PHAE9.060e-945.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXB0_ECTSI7.490e-847.06Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4I5_9PHAE2.830e-748.53Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7299contigH-paniculata_contig7299:5380..5770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.6434526-CDS-H-paniculata_contig7299:5380..54881622930889.6434526-CDS-H-paniculata_contig7299:5380..5488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7299 5381..5488 -
1691481497.9155822-CDS-H-paniculata_contig7299:5380..54881691481497.9155822-CDS-H-paniculata_contig7299:5380..5488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7299 5381..5488 -
1622930889.662838-CDS-H-paniculata_contig7299:5695..57701622930889.662838-CDS-H-paniculata_contig7299:5695..5770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7299 5696..5770 -
1691481497.9328027-CDS-H-paniculata_contig7299:5695..57701691481497.9328027-CDS-H-paniculata_contig7299:5695..5770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7299 5696..5770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7299.15265.1prot_H-paniculata_contig7299.15265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7299 5381..5770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7299.15265.1

>prot_H-paniculata_contig7299.15265.1 ID=prot_H-paniculata_contig7299.15265.1|Name=mRNA_H-paniculata_contig7299.15265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
RNHRLVFWAVATDDATFKAVLLGLKVAGLILMTTAIIYGTETAAGLDDGS
MAFNEDDMKWH
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mRNA from alignment at H-paniculata_contig7299:5380..5770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7299.15265.1 ID=mRNA_H-paniculata_contig7299.15265.1|Name=mRNA_H-paniculata_contig7299.15265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=391bp|location=Sequence derived from alignment at H-paniculata_contig7299:5380..5770- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAATCACCGGCTAGTCTTCTGGGCAGTTGCGACAGATGACGCAACGTT
CAAGGCAGTGCTGCTAGGCCTCAAGGTGTGTTGATGCTGCTCGTCACTGT
TCTTTCCGCTTCAAAAATTCGTGTTGTAGCCAACTTTCTCGCGTGCGATA
CACGAATCTGTGCATATATTTTGCACGCTCTTCTCCCATCCGTTTGTATT
GCTGTACCATTTGCTGTAGGAGAGGCTACGTGTGAGTGCGTGTCTAACCT
GGTAATGCGGTTGTTGCGTCATGTTCCATAAGGTGGCTGGGCTAATCTTG
ATGACAACAGCCATTATTTACGGCACGGAGACAGCAGCGGGCCTGGACGA
CGGGAGCATGGCGTTTAACGAGGATGACATGAAGTGGCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig7299:5380..5770-

>mRNA_H-paniculata_contig7299.15265.1 ID=mRNA_H-paniculata_contig7299.15265.1|Name=mRNA_H-paniculata_contig7299.15265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig7299:5380..5770- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAATCACCGGCTAGTCTTCTGGGCAGTTGCGACAGATGACGCAACGTT
CAAGGCAGTGCTGCTAGGCCTCAAGAGAAATCACCGGCTAGTCTTCTGGG
CAGTTGCGACAGATGACGCAACGTTCAAGGCAGTGCTGCTAGGCCTCAAG
GTGGCTGGGCTAATCTTGATGACAACAGCCATTATTTACGGCACGGAGAC
AGCAGCGGGCCTGGACGACGGGAGCATGGCGTTTAACGAGGATGACATGA
AGTGGCACGTGGCTGGGCTAATCTTGATGACAACAGCCATTATTTACGGC
ACGGAGACAGCAGCGGGCCTGGACGACGGGAGCATGGCGTTTAACGAGGA
TGACATGAAGTGGCAC
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