mRNA_H-paniculata_contig7282.15257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: D8LJI2_ECTSI (Ribosomal protein L35, isoform CRA_b n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI2_ECTSI) HSP 1 Score: 171 bits (434), Expect = 4.380e-49 Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KA++LR + K++LT +LT+LRTELQ+LRVA+VTGGAASKLAKI VRKKIAR LTVYHQSQK R+RE Y D KYVPLDLRPKKTRAIRRRL P+QL+ KT+RQ+K+ +NLPRRCYALKA
Sbjct: 5 KAHELRKLGKAELTAKLTELRTELQTLRVAQVTGGAASKLAKIAVVRKKIARTLTVYHQSQKQRFREYYEDMKYVPLDLRPKKTRAIRRRLNPDQLAIKTDRQQKKLDNLPRRCYALKA 123
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: S7S0I6_GLOTA (Ribosomal protein L29 n=14 Tax=Agaricomycetes incertae sedis TaxID=355688 RepID=S7S0I6_GLOTA) HSP 1 Score: 138 bits (347), Expect = 3.290e-36 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DL+ QL DL+ EL SLRV KV GG+ASKL KI TVRK IARVLTV + Q+ RE Y +KKY+PLDLRPK+TRAIRRRLT + S KTE+QRK++ + P+R YA+KA
Sbjct: 6 KAYELQSKSKNDLSKQLVDLKNELLSLRVQKVVGGSASKLTKINTVRKSIARVLTVMNHKQRQNLREFYKNKKYLPLDLRPKRTRAIRRRLTKHEKSLKTEKQRKKDIHFPKRKYAVKA 124
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: A0A137QG94_9AGAR (60S ribosomal protein L35 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QG94_9AGAR) HSP 1 Score: 136 bits (343), Expect = 1.270e-35 Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DL QLT+L+ EL SLRV +VTGG+A+KL KI TVR+ +AR+LTV +Q + RE Y DKKY PLDLRPKKTRAIRRRLT + S KT +Q+K+++N PRR YA+KA
Sbjct: 6 KAYELQSKSKNDLYKQLTELKNELLSLRVQRVTGGSAAKLTKIATVRRSVARILTVINQKARQNLREYYKDKKYKPLDLRPKKTRAIRRRLTKHEQSLKTLKQKKKDQNFPRRKYAVKA 124
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: K5W0G2_AGABU (Uncharacterized protein n=3 Tax=Agaricales TaxID=5338 RepID=K5W0G2_AGABU) HSP 1 Score: 136 bits (342), Expect = 1.780e-35 Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DL QL +L+ EL +LRV K+ GG+A+KL KI TVRK IARVLTV +Q + RE Y DKKY PLDLRPKKTRAIRRRLT +LS KT +Q+K+++N PRR YA+KA
Sbjct: 6 KAYELQSKSKTDLLKQLQELKQELLTLRVQKIAGGSAAKLTKIATVRKSIARVLTVINQKARQNLREYYKDKKYKPLDLRPKKTRAIRRRLTKNELSLKTLKQKKKDQNFPRRKYAVKA 124
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: A0A7N0UBG4_KALFE (Uncharacterized protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7N0UBG4_KALFE) HSP 1 Score: 135 bits (341), Expect = 2.420e-35 Identity = 76/119 (63.87%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
K ++LR+ SK+DL QL DL+TEL LRVAKVTGGA +KL+KIK VR +IA+VLTV Q QK R++Y +KKY+PLDLRPKKTRAIRRRLT Q S KTER++K+E P R YA+KA
Sbjct: 5 KVHELRAKSKADLLSQLKDLKTELSLLRVAKVTGGAPNKLSKIKVVRLQIAQVLTVISQKQKAALRDVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPLRKYAIKA 123
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: A0A061RP20_9CHLO (Large subunit ribosomal protein L35e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RP20_9CHLO) HSP 1 Score: 135 bits (340), Expect = 3.390e-35 Identity = 75/119 (63.03%), Postives = 95/119 (79.83%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
+A++LR+ SKS+LT QL +L+ EL +LRVAKVTGGA +K++KIK VRK IARVLTV +Q+QK RE Y KKY+PLDLRPK+TRAIRRRLT Q++ KTE+Q K+E P R YA+KA
Sbjct: 5 RAHELRTKSKSELTTQLKELKGELAALRVAKVTGGAPNKMSKIKVVRKSIARVLTVINQNQKSALREAYKGKKYIPLDLRPKRTRAIRRRLTKHQVNLKTEKQIKKERAFPMRKYAVKA 123
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: W4KDY2_HETIT (Uncharacterized protein n=2 Tax=Russulales TaxID=452342 RepID=W4KDY2_HETIT) HSP 1 Score: 135 bits (340), Expect = 3.490e-35 Identity = 73/119 (61.34%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DLT QL++L+TEL +LRV K+ GG+ASKL KI TVRK IARVLTV + Q+ R+ Y +KKY+PLDLRPK+TRAIRRRLTP + S KT +QRK++ + P+R +A+KA
Sbjct: 6 KAYELQSKSKNDLTKQLSELKTELLTLRVQKIAGGSASKLTKINTVRKSIARVLTVTNHKQRQNLRDFYKNKKYLPLDLRPKRTRAIRRRLTPHEKSLKTLKQRKKDIHFPQRKFAVKA 124
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: A0A1Y2IWE5_PYCCO (Ribosomal protein L35 n=5 Tax=Agaricomycetes TaxID=155619 RepID=A0A1Y2IWE5_PYCCO) HSP 1 Score: 135 bits (340), Expect = 3.600e-35 Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DL+ QL +L+TEL +LRV K+ GG+A+KL KI TVRK IARVLTV +Q Q+ RE Y KKY+PLDLRPKKTRAIRRRLT + S KT +QRK+E + P R YA+KA
Sbjct: 6 KAYELQSKSKNDLSNQLKELKTELLNLRVQKIAGGSAAKLTKINTVRKSIARVLTVMNQKQRQNLREFYKKKKYMPLDLRPKKTRAIRRRLTKHEASLKTLKQRKKEIHFPLRKYAVKA 124
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: A0A078ITA2_BRANA (BnaAnng13110D protein n=6 Tax=Brassiceae TaxID=981071 RepID=A0A078ITA2_BRANA) HSP 1 Score: 135 bits (340), Expect = 4.880e-35 Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALK 354
K ++LR SKSDL QL DL+ EL LRVAKVTGGA +KL+KIK VRK IA+VLTV Q QK RE Y +KK++PLDLRPKKTRAIRRRLT QLS KTER++K+E P R YA+K
Sbjct: 17 KVHELRDKSKSDLQNQLQDLKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVTSQKQKSALREAYKNKKFIPLDLRPKKTRAIRRRLTKHQLSLKTEREKKKEMYFPIRKYAIK 134
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Match: D8PP00_SCHCM (Uncharacterized protein n=2 Tax=Schizophyllaceae TaxID=5332 RepID=D8PP00_SCHCM) HSP 1 Score: 135 bits (339), Expect = 5.040e-35 Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 KAYQLRSMSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYHQSQKLRYRELYADKKYVPLDLRPKKTRAIRRRLTPEQLSYKTERQRKREENLPRRCYALKA 357
KAY+L+S SK+DL+ QL +L+ EL +LRV K+ GG+ASKL KI TVRK IARV+TV + + RE Y KKY+PLDLRPK+TRAIRRR+T +LS KT +Q KRE+N PRR YALKA
Sbjct: 6 KAYELQSKSKNDLSKQLLELKNELLTLRVQKIAGGSASKLTKINTVRKSIARVMTVMNHKARQNTREFYKGKKYLPLDLRPKRTRAIRRRMTKHELSLKTLKQTKREQNFPRRKYALKA 124 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7282.15257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7282.15257.1 >prot_H-paniculata_contig7282.15257.1 ID=prot_H-paniculata_contig7282.15257.1|Name=mRNA_H-paniculata_contig7282.15257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp MSKSDLTGQLTDLRTELQSLRVAKVTGGAASKLAKIKTVRKKIARVLTVYback to top mRNA from alignment at H-paniculata_contig7282:7488..10775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7282.15257.1 ID=mRNA_H-paniculata_contig7282.15257.1|Name=mRNA_H-paniculata_contig7282.15257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3288bp|location=Sequence derived from alignment at H-paniculata_contig7282:7488..10775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7282:7488..10775+ >mRNA_H-paniculata_contig7282.15257.1 ID=mRNA_H-paniculata_contig7282.15257.1|Name=mRNA_H-paniculata_contig7282.15257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig7282:7488..10775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |