mRNA_H-paniculata_contig7245.15221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7245.15221.1 vs. uniprot
Match: D8LE69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE69_ECTSI) HSP 1 Score: 649 bits (1673), Expect = 2.160e-222 Identity = 346/504 (68.65%), Postives = 376/504 (74.60%), Query Frame = 1
Query: 1 VYFLRSMAVLVQAGPGGGVDIPAVKAVLHAQGLERDKGLKDRSKPRRLASLPGHTDDLLRHTRGDESTGYPSGHLMPYRLVAGPLLKLA-----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRDAALRESSRTVCGLVTPAGYGEAHGRYENEAQLSHLFPATDGCFVSMGGNV--EPNALLVEGNGYLAAVYSIPDMNLLGRKALSLQVTRVLATPECLGSQRGKVLYVVRSPQHPSGFLETMVYSDRGGLQCPEPLLPVGPLTPPNTAGSSGVAGSWASGRPYVNAHFVLRPWERVVDVKFQPLTTVAELATWGYRRGA-------GAGSAAAPMVAVLTTRRVLMLSATRLTPVALAWGHPPDSAAVLDASGGLSVSAVSIAWAGSSVVCALEDGRVVYLSPGDGMSSSGYT--HGDGRSGIPGDGVAVSASPWRPLCSVDHRMCSGGIGIAACLPDRLCLVARGGVGGGIAHLLTRPFFPLEPLLAGALAAS 1446
VYFLR+MAVL+QAGPGGG+D+PAVKAVLHAQGLERDKGLKDRSKPRRLASLPGHTDDLLRHT G ES G+PSGHLMPYRLVAGPLL+L+ G +RDAALRE+SRTVCGLVTPAGYGEAHGRYENEAQLSHLFPATDGCFVS N EP+ALLVEG GYLAAVYSIPDM +LGRKALSL VTRV+ATPECLG QRGKVLYVVRSP PSGFLETMVYSDRGGLQCPEPLLPV + GVA WA GRPY NAH VL P ERVVD KFQ LTTV ELATWGYRRG LMLSA RLT VA AWGHPPDS + L ASGGLSVSAVS+AWAGSSVVC LEDGR+VYL+PGDG+ ++ H IPG G ++ + PWRPLCS+D R+C+GGIGIAACLPDRLCLV RGG GGGI+HL+TRPFFPLEPL+AG LAA+
Sbjct: 126 VYFLRTMAVLIQAGPGGGLDVPAVKAVLHAQGLERDKGLKDRSKPRRLASLPGHTDDLLRHTTG-ESAGFPSGHLMPYRLVAGPLLRLSTAEGGGAAAGLGGVSHEERRRFLVLYEIVATEGSDRPPPPNRDAALRETSRTVCGLVTPAGYGEAHGRYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVLYVVRSPHTPSGFLETMVYSDRGGLQCPEPLLPV-----VSQGEGGGVAPGWAGGRPYANAHLVLEPSERVVDAKFQQLTTVTELATWGYRRGGQXXXXXXXXXXXXXXXXXXXXXXXXLMLSAARLTTVAEAWGHPPDSRSALGASGGLSVSAVSVAWAGSSVVCTLEDGRIVYLNPGDGVKNAFQQNEHQHQEPDIPGGG-SLGSGPWRPLCSMDRRLCAGGIGIAACLPDRLCLVVRGGAGGGISHLITRPFFPLEPLVAGVLAAA 622
BLAST of mRNA_H-paniculata_contig7245.15221.1 vs. uniprot
Match: A0A6H5KK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK27_9PHAE) HSP 1 Score: 370 bits (951), Expect = 9.490e-119 Identity = 205/348 (58.91%), Postives = 228/348 (65.52%), Query Frame = 1
Query: 436 RYENEAQLSHLFPATDGCFVSMGGNV--EPNALLVEGNGYLAAVYSIPDMNLLGRKALSLQVTRVLATPECLGSQRGKVLYVVRSPQHPSGFLETMVYSDRGGLQCPEPLLPVGPLTPPNTAGSSGVAGSWASGRPYVNAHFVLRPWERVVDVKFQPLTTVAELATWGYRRGA-------GAGSAAAPMVAVLTTRRVLMLSATRLTPVALAWGHPPDSAAVLDASGGLSVSAVSIAWAGSSVVCALEDGRVVYLSPGDGMSSS--GYTHGDGRSGIPGDGVAVSASPWRPLCSVDHRMCSGGIGIAACLPDRLCLVARGGVGGGIAHLLTRPFFPLEPLLAGALAAS 1446
RYENEAQLSHLFPATDGCFVS N EP+ALLVEG GYLAAVYSIPDM +LGRKALSL VTRV+ATPECLG QRGKV+ + G GVA WA GRPY NAH VL P ERVV+ KFQ LTT ELATWGYRR LSA RLT VA AWGHPP S + L ASGGLSVSAVS+AWAGSSVVC LEDGR+VYL PGDG++S+ + H IPG G ++ + PWRPLCS+D R+C+GGIGIAACLPDRLCLV RGG GGGI+HL+TRPFFPLEPL+AG LAA+
Sbjct: 3 RYENEAQLSHLFPATDGCFVSTSANAGAEPSALLVEGGGYLAAVYSIPDMQMLGRKALSLPVTRVIATPECLGPQRGKVV---------------------------------------SQGGGGGVAPGWAGGRPYANAHLVLEPSERVVEAKFQQLTTATELATWGYRRSGQETXXXXXXXXXXXXXXXXXXXXXXXXLSAARLTTVAEAWGHPPHSRSALGASGGLSVSAVSVAWAGSSVVCTLEDGRIVYLHPGDGVNSAFQQHEHQHQEPDIPGGG-SLGSGPWRPLCSMDRRLCAGGIGIAACLPDRLCLVVRGGAGGGISHLITRPFFPLEPLVAGVLAAA 310
BLAST of mRNA_H-paniculata_contig7245.15221.1 vs. uniprot
Match: A0A7R9YB43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB43_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.270e-8 Identity = 74/266 (27.82%), Postives = 109/266 (40.98%), Query Frame = 1
Query: 700 GFLETMVYSDRGGLQCPEPLLPVGPLTPPNTAGSSGVAGSWASGRPYVNAHFVLRPWERVVDVKFQPL------TTVAELATWGYRRGA------GAGSAAAPMVAVLTTRRVL-------MLSATRLTPVALAWGHPPDSAAVLDASGGLSVSA-VSIAWAGSSVVCALEDGRVVYLSPGDGMSSSGYTHGDGRSGIPGDGVAVSASPWRPLCSVDHRMCSGGIGIAACLPDRLCLVARGGVGGGIAHLLTRPFFPLEPLLAGAL 1437
G L+T + GG L PVG L+ N F+ P E +VD +QP+ + L T +R A A P++AV TT R L +L+AT + ++ + + SA +S+ WA +++ E G V LS + +G PG +VS + P+ S+D +GG I + LP RL L+ R G G ++TRPFFPLEPLL G +
Sbjct: 44 GALDTRIRQRFGGRAPATILQPVGELS---------------------NVMFIFPPGENIVDALWQPVDPEPVQNDASRLWTRAHREAATGAPHPDAEEVGKPLLAVRTTHRALIFDYKMKLLAATTVPRWLISTDLMSAPTETMRGNDECMFSAPISMIWAADTLLVGFEGGMVKALSR------------EAPNGQPGPSTSVSLN-MSPVLSLDASKVAGGYQILSALPTRLILLQRSN-GTGAGRIVTRPFFPLEPLLQGIM 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7245.15221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7245.15221.1 >prot_H-paniculata_contig7245.15221.1 ID=prot_H-paniculata_contig7245.15221.1|Name=mRNA_H-paniculata_contig7245.15221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=476bp MAVLVQAGPGGGVDIPAVKAVLHAQGLERDKGLKDRSKPRRLASLPGHTDback to top mRNA from alignment at H-paniculata_contig7245:1349..11162- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7245.15221.1 ID=mRNA_H-paniculata_contig7245.15221.1|Name=mRNA_H-paniculata_contig7245.15221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9814bp|location=Sequence derived from alignment at H-paniculata_contig7245:1349..11162- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7245:1349..11162- >mRNA_H-paniculata_contig7245.15221.1 ID=mRNA_H-paniculata_contig7245.15221.1|Name=mRNA_H-paniculata_contig7245.15221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2856bp|location=Sequence derived from alignment at H-paniculata_contig7245:1349..11162- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |