mRNA_H-paniculata_contig71973.15174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A6H5KY90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY90_9PHAE) HSP 1 Score: 105 bits (261), Expect = 6.620e-23 Identity = 75/219 (34.25%), Postives = 106/219 (48.40%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYG-GQDCGVEMLAYADSDDATRDDSRRSM-------------------------------------VNEVPFLRQGQALIMPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKHISALMDV 543
E +G+LMW AT TRPDIA+ VR + C +P H RA + IL +V+R +DL I++ G G+ M +AD+D A++ RRS+ + EV FL Q + P + E NQG +AQN SS ++HIDV+HH +R+ V ++ I V + Q AD LTKAL FE H + +M V
Sbjct: 532 ELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGISFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCSSWFSRTQKCVTLSRTVAEYVSLADVMKEVLFLEQVWRFMFP--------VFEDNQGAIHLAQNPISSSNSKHIDVRHHFIRELVSRKEISIFDVESAYQHADFLTKALHVGDFEFHRNFVMSV 742
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A225WA71_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA71_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.220e-20 Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 7 VGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFLRQGQALIMPT-----------LEHYPV---IIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKAL 498
+G L++ T TRPD+A+ V + ENP +H +A +++L+++ DL I Y G VE+ AY D+D + D RS V+ + G + + L H V ++E NQG ++ N + RT+H+D+KHH +R+ V +D+ YV T++Q AD+LTK L
Sbjct: 234 IGCLLYITTYTRPDVAYIVAQLSRFLENPGQQHWKAAIRVLRYLKGTRDLGIVYNGNKGKVELTAYTDADWGSNLDDHRS-VSSTMMMISGAPVAFKSKYQPELGGGGDLGHEQVGATQVLEDNQGAIALSINAGYNARTKHVDIKHHFIRENVAWDIIDVKYVSTKDQLADMLTKGL 410
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI) HSP 1 Score: 97.4 bits (241), Expect = 3.400e-20 Identity = 71/218 (32.57%), Postives = 107/218 (49.08%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFL----------RQGQALIMPTLEHY--------------------------PVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKHISALMDVV 546
EAVG+LM+AA ++RPDI V + ENP +H +AV +I+++ A I Y GQ+ ++ Y+DSD A+ D+RRS + L RQ + T Y P + NQG+ + +N +RT+HIDV+ H +R+ E +VDI YV + +Q AD+LTKAL +SFE + + L +V
Sbjct: 1012 EAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATYGIVYDGQNTN-GLIVYSDSDYASDPDTRRSTSGYITVLAGGAVSWMSQRQRIVTLSTTEAEYVAACDATKEAIWIQRFLKSVGVNEKGPTEMRLDNQGSIKLVKNLEFHKRTKHIDVRFHFIREVYENGQVDIKYVPSSKQLADILTKALPKNSFEANRAGLQIMV 1228
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A085N3L3_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N3L3_9BILA) HSP 1 Score: 92.4 bits (228), Expect = 4.710e-20 Identity = 59/178 (33.15%), Postives = 102/178 (57.30%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFLRQGQALIMPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKHISAL 534
+AVG+L++ AT++RPDIA V + E+P +AV ++++++ + ++ + + +++ + D+D A D + R + + +LRQ A M + P I E NQG +AQ+ S+RT+HIDV+HH +RD E+ V +VY + E ADVLTK L F++++ L
Sbjct: 24 KAVGSLLYLATVSRPDIAFAVGQLCRRVESPTQSDWKAVKRVIRYLAGSVSQKLRFSSEG-NIKLTGFVDADWAG-DHADRKSTSALQWLRQLLA-DMEVPQDGPTKIYEDNQGCIKVAQSDRCSQRTKHIDVRHHQLRDLCESGIVSLVYCPSSEMPADVLTKPLGKDKFDRYLKLL 198
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 6.550e-20 Identity = 61/182 (33.52%), Postives = 98/182 (53.85%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGG-QDCGVEMLAY-------ADSDDATRDDSRRSMVNEVPFLRQGQALIMPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKH 522
E VG+LMW A TRPDIA+ VR + C +P ++H A +AAD R GG CG + + DD + +V E+ FLR+ ++P + + + E +QG +AQN S+ ++HIDV+HHI+R+ VE ++ +++V + Q+++ LTK+L +FE H
Sbjct: 1278 ELVGSLMWLANQTRPDIANAVRAVARYCASPKLRHTDA-----DFASKAADRRSVSGGIVTCGGGAVPWFFRTQVCCAFDDEAEYVALGDVVKEILFLRKIWRFMLPQVGMPCIPVFEDSQGAIQLAQNPVSNSNSKHIDVRHHILRELVERKEISVIHVPSPYQRSEFLTKSLPKDTFESH 1454
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: H3H5K8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K8_PHYRM) HSP 1 Score: 93.6 bits (231), Expect = 1.340e-19 Identity = 59/190 (31.05%), Postives = 89/190 (46.84%), Query Frame = 1
Query: 7 VGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFLRQGQALI--------------------------MPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKAL 498
+G L++ AT TRPDIA V + ENP +H A V++L+++ I Y G V + A++D+D + D RRS+ + + + M + I E NQG +AQN RT+H+D++HH +R+ VE V + YV T+ Q AD+LTKAL
Sbjct: 104 IGCLLYIATCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYEGGTGSVRLTAFSDADWGSNLDDRRSVSGVIVVIGNAPVVFKSKFQRTMALSLCVQEVLWTRAMLKDMGAFQRNATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVTVEYVDTKNQLADILTKAL 293
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI) HSP 1 Score: 94.7 bits (234), Expect = 2.870e-19 Identity = 68/210 (32.38%), Postives = 104/210 (49.52%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFL----------RQGQALIMPTLEHY--------------------------PVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKH 522
EAVG+LM+AA ++RPDI V + ENP ++H +AV +I+++ A I Y G + ++ Y+DSD AT D+RRS V L RQ + T Y P+ + NQG+ + +N +RT+HIDV+ H +R+ + ++DI YV + +Q AD+LTKAL S+FE +
Sbjct: 718 EAVGSLMFAACVSRPDIMFAVSVVSRYLENPGLEHWQAVKRIIRYAKETAAYGIVYDGHNTD-GLIIYSDSDYATDPDTRRSTSGYVTVLAGGAVSWMSQRQRIVALSTTEAEYVAASDATKEAIWIRRLLESVGVNKKGPIEMRLDNQGSIKLIKNPEFHKRTKHIDVRFHYIREIYKNGQIDIKYVPSSKQLADILTKALPKSTFESN 926
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB) HSP 1 Score: 90.5 bits (223), Expect = 7.430e-19 Identity = 63/207 (30.43%), Postives = 97/207 (46.86%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFLRQG---------QALIMPTLE---------------------------HYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSF 513
EAVG LM+AA +TRPDI + V + NP +H +AV +IL+++ + I Y G ++ AY+D+D A D+RRS + + G + + T E P + NQ + +N ++T+HID+K+H +R+ VE + I+YV TEEQ AD+LTKA+ F
Sbjct: 39 EAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSH--IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILTKAVPRDKF 243
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.010e-18 Identity = 60/184 (32.61%), Postives = 93/184 (50.54%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEM--LAYADSDDATRDDSRRSMVNE--------VPFLRQGQALIMPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKH 522
E VG LMW A TRP+ ++ VRT + P +A KIL ++ A L + Y QD V++ + Y D+D A++ RR + V + Q + + + E N+G +A+N SS R++HIDV+HH +R+ E + + +V +EQ AD+L KAL + FE H
Sbjct: 1070 EVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYK-QDTTVDVGTIVYVDADFASKATDRRPVSGALILVAGCLVSWFSWTQKCVSLSTSEAEYXVFEDNEGAIALAENPFSSSRSKHIDVRHHFLRNLTEEGVIKVTHVPIKEQHADILAKALARNLFEVH 1252
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Match: A0A0K8SE75_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SE75_LYGHE) HSP 1 Score: 90.9 bits (224), Expect = 1.030e-18 Identity = 67/213 (31.46%), Postives = 105/213 (49.30%), Query Frame = 1
Query: 1 EAVGALMWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYGGQDCGVEMLAYADSDDATRDDSRRSMVNEVPFLRQG-----------------------------QAL--------IMPTLEHYPVIIMEGNQGTETMAQNKHSSRRTRHIDVKHHIVRDAVEAAKVDIVYVGTEEQQADVLTKALEGSSFEKHIS 528
EAVG+L++A+ ++RPDIAH V + + NPA +H AV +IL+++ +R+ Y G+ +L + D+D A + RRS V FL+ G +AL I P+ P +I NQG +A N RT+HID++HH +R+ V + ++ YV +++ AD LTK L+ F+K IS
Sbjct: 76 EAVGSLLFASQVSRPDIAHAVSSVSRFNSNPAPEHWTAVKRILRYIKGTTSMRLEYDGKKPS-PILGFCDADWANDLEDRRSTTGYV-FLKSGPISWATKRQPTVALSTTEAEYMSASAATQEALWLRGLCEEIQPSDAEGPTMIFIDNQGALNLALNGAYQARTKHIDIRHHFLREKVRSGQLTFRYVSSKDMVADSLTKPLDCEKFQKCIS 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71973.15174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig71973.15174.1 >prot_H-paniculata_contig71973.15174.1 ID=prot_H-paniculata_contig71973.15174.1|Name=mRNA_H-paniculata_contig71973.15174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp MWAATMTRPDIAHTVRTTVKLCENPAVKHKRAVVKILQHVLRAADLRITYback to top mRNA from alignment at H-paniculata_contig71973:15..665- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig71973.15174.1 ID=mRNA_H-paniculata_contig71973.15174.1|Name=mRNA_H-paniculata_contig71973.15174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at H-paniculata_contig71973:15..665- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig71973:15..665- >mRNA_H-paniculata_contig71973.15174.1 ID=mRNA_H-paniculata_contig71973.15174.1|Name=mRNA_H-paniculata_contig71973.15174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig71973:15..665- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |