mRNA_H-paniculata_contig71399.15116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71399.15116.1
Unique NamemRNA_H-paniculata_contig71399.15116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: A0A0J7K098_LASNI (Gag-int-pol protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K098_LASNI)

HSP 1 Score: 60.5 bits (145), Expect = 1.790e-9
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 LWAEAMNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGY--MRKIITEHKMAPRGEKCIMLGISHN 222
            +W EA+  A  + N S TSS++GNVTP E +YG    L++L+ F  + Y  + K   E K   +GE CIM+G +HN
Sbjct:   22 MWGEAILCAAYLINRSLTSSLKGNVTPAEMFYGNKPNLKNLKIFRCLAYYCIPKQRLEGKFNSKGEACIMIGYTHN 97
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: A0A537JHP3_9BACT (DDE-type integrase/transposase/recombinase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A537JHP3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.870e-7
Identity = 23/69 (33.33%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    4 WAEAMNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGYMRKIITEHKMAPRGEKCIMLG 210
            W EA++ A  + N   TSS++GN++P+E W+G    ++HL+ FG + + +    + K+  R  +C  LG
Sbjct:  372 WGEAVHTAAKVRNRLPTSSLKGNISPHEAWFGVAPSIQHLRVFGCLAFYKITHPKTKVQSRCRRCCFLG 440
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: Q8WRX5_ANOGA (Pol polyprotein (Fragment) n=2 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WRX5_ANOGA)

HSP 1 Score: 52.4 bits (124), Expect = 5.920e-6
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    4 WAEAMNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGYMRKIITEH-KMAPRGEKCIMLGISHNH 225
            WAEA+N A  + N+S + SIE   TP+E WYGK     +L  FG    +     +  K+ P+G+K I +G + NH
Sbjct:  203 WAEAINAAVYLQNISSSRSIEK--TPFELWYGKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLIFVGYADNH 275
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: A0A225VIS3_9STRA (Retrovirus-related Pol Polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VIS3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.370e-5
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 LWAEAMNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGYMR--KIITEHKMAPRGEKCIMLGIS 216
            LW E ++Y   + NMS T ++ GN+TPY+K +G+   L++L+  G V Y    K   + K+  R +  + LG++
Sbjct:  118 LWGEVLHYVVHVDNMSVTKAL-GNMTPYQKLWGRKPDLKNLKVCGCVAYYHIPKQKQKDKLQMRSKSAVFLGMA 190
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: A0A6H5H5K9_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H5K9_9HEMI)

HSP 1 Score: 50.1 bits (118), Expect = 3.880e-5
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LWAEAMNYACDITNMSCTSSIEGNVTPYEKWYGK-TAPLEHLQPFGTVGYM 150
            LWAEA+N A  + N++  SS+EG  TPYE+W+ +   P++HL+ FGT  Y+
Sbjct:  618 LWAEAVNTAVYLLNLTGPSSVEGK-TPYEQWFKRENPPIDHLKVFGTECYV 667
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BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Match: A0A225W2P7_9STRA (DNA binding protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W2P7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 6.890e-5
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 LWAEAMNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGYMR--KIITEHKMAPRGEKCIMLGISHN 222
            LW E ++Y   + NMS T ++ GN+TPY+K +G+   L++L+  G V Y    K   + K+  R +  + LG++ +
Sbjct:   64 LWGEVLHYVVHVDNMSVTKAL-GNITPYQKPWGRILDLKNLKVCGCVVYYHIPKQKQKDKLQMRSKSAVFLGMAES 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71399.15116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0J7K098_LASNI1.790e-942.11Gag-int-pol protein n=1 Tax=Lasius niger TaxID=677... [more]
A0A537JHP3_9BACT1.870e-733.33DDE-type integrase/transposase/recombinase n=1 Tax... [more]
Q8WRX5_ANOGA5.920e-638.67Pol polyprotein (Fragment) n=2 Tax=Anopheles gambi... [more]
A0A225VIS3_9STRA3.370e-533.78Retrovirus-related Pol Polyprotein from transposon... [more]
A0A6H5H5K9_9HEMI3.880e-547.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A225W2P7_9STRA6.890e-532.89DNA binding protein n=1 Tax=Phytophthora megakarya... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71399contigH-paniculata_contig71399:405..650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.5036666-CDS-H-paniculata_contig71399:404..6351622930865.5036666-CDS-H-paniculata_contig71399:404..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71399 405..635 -
1691481487.3536115-CDS-H-paniculata_contig71399:404..6351691481487.3536115-CDS-H-paniculata_contig71399:404..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71399 405..635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.5197408-UTR-H-paniculata_contig71399:635..6501622930865.5197408-UTR-H-paniculata_contig71399:635..650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig71399 636..650 -
1691481487.3623915-UTR-H-paniculata_contig71399:635..6501691481487.3623915-UTR-H-paniculata_contig71399:635..650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig71399 636..650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71399.15116.1prot_H-paniculata_contig71399.15116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71399 405..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71399.15116.1

>prot_H-paniculata_contig71399.15116.1 ID=prot_H-paniculata_contig71399.15116.1|Name=mRNA_H-paniculata_contig71399.15116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MNYACDITNMSCTSSIEGNVTPYEKWYGKTAPLEHLQPFGTVGYMRKIIT
EHKMAPRGEKCIMLGISHNHPSGTIRV
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mRNA from alignment at H-paniculata_contig71399:405..650-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71399.15116.1 ID=mRNA_H-paniculata_contig71399.15116.1|Name=mRNA_H-paniculata_contig71399.15116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig71399:405..650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATGGGCGGAGGCGATGAACTACGCCTGCGATATCACCAATATGAGCTG
CACTTCGTCCATTGAAGGAAACGTTACCCCGTACGAGAAGTGGTACGGGA
AAACAGCGCCGCTGGAACACCTGCAACCTTTTGGGACGGTAGGCTACATG
CGCAAGATCATCACGGAACACAAGATGGCACCACGAGGAGAGAAGTGCAT
CATGCTGGGTATCTCCCACAACCACCCAAGCGGAACTATCCGCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig71399:405..650-

>mRNA_H-paniculata_contig71399.15116.1 ID=mRNA_H-paniculata_contig71399.15116.1|Name=mRNA_H-paniculata_contig71399.15116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig71399:405..650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTACGCCTGCGATATCACCAATATGAGCTGCACTTCGTCCATTGA
AGGAAACGTTACCCCGTACGAGAAGTGGTACGGGAAAACAGCGCCGCTGG
AACACCTGCAACCTTTTGGGACGGTAGGCTACATGCGCAAGATCATCACG
GAACACAAGATGGCACCACGAGGAGAGAAGTGCATCATGCTGGGTATCTC
CCACAACCACCCAAGCGGAACTATCCGCGTTATGAACTACGCCTGCGATA
TCACCAATATGAGCTGCACTTCGTCCATTGAAGGAAACGTTACCCCGTAC
GAGAAGTGGTACGGGAAAACAGCGCCGCTGGAACACCTGCAACCTTTTGG
GACGGTAGGCTACATGCGCAAGATCATCACGGAACACAAGATGGCACCAC
GAGGAGAGAAGTGCATCATGCTGGGTATCTCCCACAACCACCCAAGCGGA
ACTATCCGCGTT
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