mRNA_H-paniculata_contig710.15062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 6.740e-8 Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 673 RQQQRKLLLRGVSCRVCAGELVAVI------------------------------GASGAGKSTFLDLLAGRKLDGFCAGQVLL 834
R++++++L +GV+CR CAG++VAVI GASGAGKSTFLDLLAG+K +G CAGQ+LL
Sbjct: 157 REKKKRVLTQGVNCRFCAGDMVAVIVSLSHAWRSAVGGRLGRRQAACMKTAAQQAGASGAGKSTFLDLLAGKKKEGECAGQILL 240
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: D8LSM2_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM2_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 3.550e-6 Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1
Query: 733 LVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLL 834
+VAVIGASGAGKSTFLDLLAG+K +G CAGQ+LL
Sbjct: 1 MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILL 34
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A5P1END7_ASPOF (ABC transporter domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1END7_ASPOF) HSP 1 Score: 59.3 bits (142), Expect = 3.780e-6 Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 592 DLRYEIDVPVTAIRSKTGDLRRRRWQRRQQQRKLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLN 837
D+RY +D+P ++++TGD Q R LL+G+S G L A++G SGAGK+T +D+LAGRK G+ G + +N
Sbjct: 698 DIRYSVDMP-QEMKAQTGD----------QARLELLKGISGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNICIN 768
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A316Z4Z1_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z4Z1_9BASI) HSP 1 Score: 58.9 bits (141), Expect = 4.880e-6 Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query: 688 KLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLN 837
KL+L G+S V G+++A++GASGAGKSTFLDLLAGR G +G+VL+N
Sbjct: 407 KLVLDGISGTVKPGQVMAIVGASGAGKSTFLDLLAGRNKRGSSSGRVLVN 456
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: UPI0009E3E7DD (LOW QUALITY PROTEIN: ABC transporter G family member 36-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3E7DD) HSP 1 Score: 58.2 bits (139), Expect = 9.170e-6 Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 595 LRYEIDVPVTAIRSKTGDLRRRRWQRRQQQRKLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLN 837
+RY +D+P D++ Q Q+ R LLRG+S G L A++G SGAGK+T +DLLAGRK DG+ G +L+N
Sbjct: 862 IRYSVDMP--------QDIKA---QGVQEDRLELLRGLSGSFRPGVLTALMGVSGAGKTTLMDLLAGRKTDGYTEGSILIN 931
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A507CYE2_9FUNG (ABC transporter domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CYE2_9FUNG) HSP 1 Score: 55.8 bits (133), Expect = 4.430e-5 Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 592 DLRYEIDVPVTAIRSKTGDLRRRRWQRRQQQRKLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLN 837
DL Y IDVP A T + R+ R++ K +L+GVS G L AV+GASGAGK++ L +LAG G GQ+L+N
Sbjct: 47 DLAYSIDVPAPA----TVVASQPRFARKRMMSKPILKGVSGVFKPGRLCAVMGASGAGKTSLLQVLAGEARSGEVQGQILIN 124
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A2N5UL68_9BASI (Uncharacterized protein n=3 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5UL68_9BASI) HSP 1 Score: 55.8 bits (133), Expect = 4.940e-5 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 688 KLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLNDGQSS 852
K +LR VS + +G+L+A++GASGAGKS+ LD+LA + GF AG +L+ND Q S
Sbjct: 419 KPVLRQVSGKAKSGQLLAIMGASGAGKSSLLDILAKKSKSGFVAGDILVNDMQIS 473
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A7S1MMI7_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MMI7_NEODS) HSP 1 Score: 55.5 bits (132), Expect = 5.930e-5 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 529 HKHESGRSAEQVDEEILCEVTDLRYEIDVPVTAIRSKTGDLRRRRWQRRQQQRKLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLN 837
H+H+S +V DL YE+++P KT +++R +L GVS V AG+++A++G SGAGK+T LD+LA R+ G G++L+N
Sbjct: 57 HQHDSSAGKPRVS----LSFKDLVYEVELP------KTKEIKR------------ILNGVSGHVHAGQMMAILGPSGAGKTTMLDILAQRQKGGTVTGELLMN 137
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: A0A5C2HWT9_9GAMM (ABC transporter ATP-binding protein n=1 Tax=Ectothiorhodospiraceae bacterium BW-2 TaxID=947515 RepID=A0A5C2HWT9_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 6.360e-5 Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 682 QRKLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAG 795
QR LLL+GVSCRV AGE+VA++G +GAGKST L LLAG
Sbjct: 12 QRTLLLQGVSCRVGAGEMVALVGPNGAGKSTLLKLLAG 49
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Match: I2G2K7_USTH4 (Related to ABC transporter protein n=2 Tax=Ustilago TaxID=5269 RepID=I2G2K7_USTH4) HSP 1 Score: 55.5 bits (132), Expect = 6.620e-5 Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 688 KLLLRGVSCRVCAGELVAVIGASGAGKSTFLDLLAGRKLDGFCAGQVLLNDGQSSAQ 858
K LL G++ V GE+VA++GASGAGK+TFLD+LA R+ G +G VL+N + S Q
Sbjct: 418 KALLDGITGSVKPGEVVAIVGASGAGKTTFLDILARREKRGVTSGTVLVNGRKMSNQ 474 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig710.15062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig710.15062.1 >prot_H-paniculata_contig710.15062.1 ID=prot_H-paniculata_contig710.15062.1|Name=mRNA_H-paniculata_contig710.15062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp MDVSETSSSSSLPESLNSDLLSPLSVQESSSQASQPPSFLGTSTPTTPSGback to top mRNA from alignment at H-paniculata_contig710:1504..5072- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig710.15062.1 ID=mRNA_H-paniculata_contig710.15062.1|Name=mRNA_H-paniculata_contig710.15062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3569bp|location=Sequence derived from alignment at H-paniculata_contig710:1504..5072- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig710:1504..5072- >mRNA_H-paniculata_contig710.15062.1 ID=mRNA_H-paniculata_contig710.15062.1|Name=mRNA_H-paniculata_contig710.15062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig710:1504..5072- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |