mRNA_H-paniculata_contig70935.15054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig70935.15054.1
Unique NamemRNA_H-paniculata_contig70935.15054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A1I9LVJ8_9PHAE (50S ribosomal protein L23, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.460e-58
Identity = 90/100 (90.00%), Postives = 99/100 (99.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            MARINFSSSIDL+KYPLITSKTNLLFE+NQYTFLVDPRLNKV+IKKAIEFLFDVKIIKINSCNLPKKKRR+G+ +G++P+YKKVIVKLAKDNKIDLFSNN
Sbjct:    1 MARINFSSSIDLIKYPLITSKTNLLFEHNQYTFLVDPRLNKVNIKKAIEFLFDVKIIKINSCNLPKKKRRIGKVSGIKPQYKKVIVKLAKDNKIDLFSNN 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A0R6LUV2_UNDPI (50S ribosomal protein L23, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUV2_UNDPI)

HSP 1 Score: 180 bits (456), Expect = 8.040e-56
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            MARI FSSSIDL+KYP+ T KTNLL ENNQYTFLVDP+LNKVSIKKAIEFLFDV +IK+NSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFS N
Sbjct:    1 MARIKFSSSIDLIKYPVTTIKTNLLLENNQYTFLVDPKLNKVSIKKAIEFLFDVSVIKVNSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSIN 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A8F0JZQ2_9PHAE (Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 5.620e-49
Identity = 80/100 (80.00%), Postives = 90/100 (90.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            MARI FSSSIDL+K P+IT KTNLL ENNQYTFLVDP+L KV++K+AIEFLF+V +IKINSCNLPKKKRR+G+  G RPRYKKVIVKLAKDNKIDLFS N
Sbjct:    1 MARITFSSSIDLIKCPVITIKTNLLLENNQYTFLVDPKLTKVNVKQAIEFLFNVNVIKINSCNLPKKKRRMGKSIGFRPRYKKVIVKLAKDNKIDLFSTN 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A2R4QQ38_9PHAE (50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ38_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.730e-48
Identity = 77/100 (77.00%), Postives = 90/100 (90.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            M +I  SS IDL+KYP+ T KT LL ENNQYTFLVDP+LNK++IKKAIEFLF+VK+IK+NSCNLPKKKRRVG+F G+RPRYKKVIVKLAKD+KI+LFS N
Sbjct:    1 MVKIKLSSIIDLIKYPVTTPKTLLLLENNQYTFLVDPKLNKLNIKKAIEFLFNVKVIKVNSCNLPKKKRRVGRFIGIRPRYKKVIVKLAKDDKINLFSKN 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A8F0JZN8_9PHAE (Ribosomal protein L23 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.310e-47
Identity = 76/100 (76.00%), Postives = 90/100 (90.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            MARI FSS+IDL+KYP+ T+KT+LL ENNQYTFLVDP L K+++KKAIEFLF+VK+IK+NSCNLPKKKRRVGQF GV+PRYKKVIVKLAK+N ID  S +
Sbjct:    1 MARIKFSSTIDLIKYPISTNKTSLLLENNQYTFLVDPVLTKINVKKAIEFLFNVKVIKVNSCNLPKKKRRVGQFIGVKPRYKKVIVKLAKENTIDFSSTD 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A141BSN9_9PHAE (50S ribosomal protein L23, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN9_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.730e-46
Identity = 74/100 (74.00%), Postives = 89/100 (89.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            M +   SS IDL+KYP+ T KT LL ENNQYTF+VDP+LNK +IKK+IEFLF+VK+IK+NSCNLPKKKRRVG+FTGVRPRYKKVIVKLA ++KI+LFSN+
Sbjct:    1 MVKRKLSSLIDLIKYPVTTPKTLLLLENNQYTFMVDPKLNKFNIKKSIEFLFNVKVIKVNSCNLPKKKRRVGRFTGVRPRYKKVIVKLANNDKIELFSNS 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A8F0F780_9PHAE (Ribosomal protein L23 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F780_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.730e-46
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFS 520
            MA+IN +SSIDL+KYP+ T KTNLL ENNQYTFLVD ++ K++IKKAIE LF+VK+IKINSCNLPKKKRRVGQ  G+RPRYKKV++KLAK+N ID FS
Sbjct:    1 MAQININSSIDLIKYPMTTDKTNLLLENNQYTFLVDRKMTKIAIKKAIELLFNVKVIKINSCNLPKKKRRVGQKVGIRPRYKKVVIKLAKENIIDFFS 98
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A2I4Q2I3_9PHAE (50S ribosomal protein L23, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.820e-45
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            MA+INFS+S+DL+K PL T KT+ LFE NQYTFLVDP+L+K +IKKAIEFLF VKIIKIN+CNLPKK RRVGQ  G+RPRYKKV+VKLAK+N ID FS++
Sbjct:    1 MAKINFSTSLDLIKQPLTTLKTSQLFEKNQYTFLVDPKLDKPTIKKAIEFLFSVKIIKINTCNLPKKTRRVGQLRGIRPRYKKVVVKLAKENTIDFFSSD 100
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: A0A6B7EYM7_9PHAE (50S ribosomal protein L4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYM7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.860e-38
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:    1 SKTNDFMNLFQTCNINFSQNITLIVPIIKESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG 231
            +KTNDF+NLFQTCN+NFSQ ITLIVP I ESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG
Sbjct:  158 TKTNDFINLFQTCNVNFSQKITLIVPTIAESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG 234
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BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Match: B7T1Y2_VAULI (50S ribosomal protein L23, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y2_VAULI)

HSP 1 Score: 131 bits (329), Expect = 1.580e-36
Identity = 57/100 (57.00%), Postives = 81/100 (81.00%), Query Frame = 2 
Query:  227 MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN 526
            M  +N + +IDL+KYPLIT KT  L  NNQYTF+VDP+++K  IK+ +E++F++KIIK+N+C +P+KKRRVG+F G++P YKK IVKL+K+  I+LFS N
Sbjct:    1 MTNLNIADNIDLIKYPLITDKTIQLLNNNQYTFIVDPKISKNKIKQTLEYIFNIKIIKVNTCQIPRKKRRVGRFLGIKPNYKKAIVKLSKNYTINLFSQN 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70935.15054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVJ8_9PHAE8.460e-5890.0050S ribosomal protein L23, chloroplastic n=8 Tax=E... [more]
A0A0R6LUV2_UNDPI8.040e-5689.0050S ribosomal protein L23, chloroplastic n=25 Tax=... [more]
A0A8F0JZQ2_9PHAE5.620e-4980.00Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxI... [more]
A0A2R4QQ38_9PHAE4.730e-4877.0050S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0JZN8_9PHAE1.310e-4776.00Ribosomal protein L23 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSN9_9PHAE8.730e-4674.0050S ribosomal protein L23, chloroplastic n=13 Tax=... [more]
A0A8F0F780_9PHAE8.730e-4674.49Ribosomal protein L23 n=1 Tax=Protohalopteris sp. ... [more]
A0A2I4Q2I3_9PHAE2.820e-4574.0050S ribosomal protein L23, chloroplastic n=1 Tax=D... [more]
A0A6B7EYM7_9PHAE1.860e-3892.2150S ribosomal protein L4 n=1 Tax=Cladosiphon okamu... [more]
B7T1Y2_VAULI1.580e-3657.0050S ribosomal protein L23, chloroplastic n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70935contigH-paniculata_contig70935:156..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D1J750
Preferred namerpl23
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGs2SAK4@2759,COG0089@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size529
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.9443922-CDS-H-paniculata_contig70935:155..4581622930856.9443922-CDS-H-paniculata_contig70935:155..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70935 156..458 -
1691481483.661637-CDS-H-paniculata_contig70935:155..4581691481483.661637-CDS-H-paniculata_contig70935:155..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig70935 156..458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930856.9614332-UTR-H-paniculata_contig70935:458..6841622930856.9614332-UTR-H-paniculata_contig70935:458..684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70935 459..684 -
1691481483.6748326-UTR-H-paniculata_contig70935:458..6841691481483.6748326-UTR-H-paniculata_contig70935:458..684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig70935 459..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70935.15054.1prot_H-paniculata_contig70935.15054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig70935 156..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig70935.15054.1

>prot_H-paniculata_contig70935.15054.1 ID=prot_H-paniculata_contig70935.15054.1|Name=mRNA_H-paniculata_contig70935.15054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MARINFSSSIDLVKYPLITSKTNLLFENNQYTFLVDPRLNKVSIKKAIEF
LFDVKIIKINSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFSNN
*
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mRNA from alignment at H-paniculata_contig70935:156..684-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig70935.15054.1 ID=mRNA_H-paniculata_contig70935.15054.1|Name=mRNA_H-paniculata_contig70935.15054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=529bp|location=Sequence derived from alignment at H-paniculata_contig70935:156..684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAAAACTAATGATTTCATGAATTTATTTCAAACATGTAATATAAACTT
TTCTCAAAACATAACACTTATTGTACCAATAATAAAAGAAAGCTTATTTA
AAGCAACAAGAAACATAAAAACAACTAATATAATGCGTGCAGATACTTTA
AATTTAATAACACTTTTAGAATCTGACTATTTATTTATTAGTAAAGATAG
TTTAAAAATAATTGAGGAAACTTATAATGGCTAGAATAAATTTTAGTTCA
AGTATTGATTTAGTCAAATATCCCCTTATAACTTCTAAGACAAATTTATT
ATTTGAAAATAACCAATATACTTTCTTGGTAGACCCTAGGTTAAATAAAG
TGAGTATAAAGAAAGCAATTGAATTTTTATTCGATGTTAAAATAATTAAA
ATTAATAGTTGTAATTTACCTAAGAAAAAACGTCGTGTAGGACAATTTAC
AGGTGTTAGACCACGTTATAAAAAAGTAATCGTTAAATTAGCGAAAGATA
ATAAAATTGATCTCTTTTCTAATAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig70935:156..684-

>mRNA_H-paniculata_contig70935.15054.1 ID=mRNA_H-paniculata_contig70935.15054.1|Name=mRNA_H-paniculata_contig70935.15054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig70935:156..684- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAGAATAAATTTTAGTTCAAGTATTGATTTAGTCAAATATCCCCT
TATAACTTCTAAGACAAATTTATTATTTGAAAATAACCAATATACTTTCT
TGGTAGACCCTAGGTTAAATAAAGTGAGTATAAAGAAAGCAATTGAATTT
TTATTCGATGTTAAAATAATTAAAATTAATAGTTGTAATTTACCTAAGAA
AAAACGTCGTGTAGGACAATTTACAGGTGTTAGACCACGTTATAAAAAAG
TAATCGTTAAATTAGCGAAAGATAATAAAATTGATCTCTTTTCTAATAAC
TAAATGGCTAGAATAAATTTTAGTTCAAGTATTGATTTAGTCAAATATCC
CCTTATAACTTCTAAGACAAATTTATTATTTGAAAATAACCAATATACTT
TCTTGGTAGACCCTAGGTTAAATAAAGTGAGTATAAAGAAAGCAATTGAA
TTTTTATTCGATGTTAAAATAATTAAAATTAATAGTTGTAATTTACCTAA
GAAAAAACGTCGTGTAGGACAATTTACAGGTGTTAGACCACGTTATAAAA
AAGTAATCGTTAAATTAGCGAAAGATAATAAAATTGATCTCTTTTCTAAT
AACTAA
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