mRNA_H-paniculata_contig7078.15040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 4.260e-17 Identity = 52/161 (32.30%), Postives = 93/161 (57.76%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNVM 841
TG+ +++ D+DYA+ R SVSG V+ GG ++C ++VA+A+++ EVLFLRQ F++P + + EDN + ++ H ++ ++HIDV+HH +R+ VE +++ + +V + QH LTKA+ + SF H + +MN++
Sbjct: 11 TGMSMQVFV--DADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNLL 169
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.430e-17 Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 2
Query: 326 VRTKDRGLGNHLWRTG--LRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
VRT D G+ +R G + M D+DYA+ R SVSG V+ GG ++C ++V+LA+++ EVLFLRQ + F++P + + EDNQ A ++ S+ ++HIDV+HH +R+ V +++ + +V + QH LTKAL FE H N +M++
Sbjct: 81 VRTSDLGI---TFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSM 253
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 8.350e-17 Identity = 55/160 (34.38%), Postives = 93/160 (58.13%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
TG+ +++ D+DYA+ R SVSG V+ GG ++C ++VA+A+++ EVLFLRQ F++P + + EDNQ A ++ H ++ ++HIDV+HH +R+ VE +++ + +V T QH LTKA+ + SF H + +MN+
Sbjct: 218 TGMSMQVFV--DADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.020e-16 Identity = 55/160 (34.38%), Postives = 92/160 (57.50%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
TG+ +++ D+DYA+ R SVSG V+ GG ++C ++VA+A+++ EVLFLRQ F++P + + EDNQ A ++ H ++ ++HIDV+HH +R+ VE +++ + V T QH LTKA+ + SF H + +MN+
Sbjct: 163 TGMSMQVFV--DADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.620e-16 Identity = 57/164 (34.76%), Postives = 94/164 (57.32%), Query Frame = 2
Query: 365 RTGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRCQR------RGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
R G +++ D+D+A+ +R SVSG V GG SV F R Q+ ++VAL ++V E++FLRQ F++P + + I EDNQ A ++ S+ ++HIDV+HH +R+ VE +++ +++V + Q LTK+L + SFE H +MN+
Sbjct: 66 RYGGGIKLAGYADADFASKAANRRSVSGGIVTCGGG-SVSW--FSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMNL 226
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 8.360e-16 Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
TG+ +++ D+DYA+ R SVSG V+ GG ++C ++VA+A+++ EVLFLRQ F++P + + EDNQ A ++ H ++ ++HIDV+HH +R+ VE +++ + +V T QH LTKA+ + S H + +MN+
Sbjct: 280 TGMSMQVFV--DADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.740e-15 Identity = 54/160 (33.75%), Postives = 93/160 (58.13%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
TG+ +++ D+DYA+ R SVSG V+ GG ++C ++VA+A+++ EVLFLRQ F++P + + EDNQ A ++ H ++ ++HIDV+HH +R+ VE +++ + +V + QH LTKA+ + SF H + +MN+
Sbjct: 1314 TGMSMQVFV--DADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 1471
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.660e-15 Identity = 60/176 (34.09%), Postives = 95/176 (53.98%), Query Frame = 2
Query: 326 VRTKDRGLGNHLWRTG--LRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
VRT D G+ +R G + M D+DYA+ R SVSG V+ GG ++C ++V+LA+++ EVLFLRQ F++P + + EDNQ A ++ S+ ++HIDV+HH +R+ V +++ + +V + QH LTKAL FE H N +M++
Sbjct: 265 VRTSDLGI---TFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.350e-15 Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 2
Query: 380 VRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
V + D+D+A+ R SVSG V GG ++C ++VAL ++V E+LFLRQ F++P + + + EDNQ A ++ S+ ++HIDV+HH +R+ VE +++ +++V + Q LTK+L + +FE H + +MN+
Sbjct: 55 VDAVGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 210
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 3.980e-15 Identity = 53/160 (33.12%), Postives = 93/160 (58.13%), Query Frame = 2
Query: 368 TGLRVRMLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRC---QRRGQQHVALAEMVNEVLFLRQEQAFIMPTLEDYPVIIKEDNQRAEKMGHTKHSSRRTRHIDVKHHIVRDAVEAEKVDLVYVGTGEQHTGVLTKALERSSFEKHVNGLMNV 838
TG+ +++ D+DYA+ R SVSG V+ GG + ++C ++VA+A+++ EVLFLRQ F++P + + E+NQ A ++ H + ++HIDV+HH +R+ VE +++ + +V + QH LTKA+ + SF H + +MN+
Sbjct: 1273 TGMGMQVFV--DADYASKATDRRSVSGGLVMCGGGCATWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFENNQGAIQIAHNPTTKSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDLVMNL 1430 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7078.15040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7078.15040.1 >prot_H-paniculata_contig7078.15040.1 ID=prot_H-paniculata_contig7078.15040.1|Name=mRNA_H-paniculata_contig7078.15040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp MLACTDSDYATCQDSRCSVSGRAVLLGGARSVGTRGFRRCQRRGQQHVALback to top mRNA from alignment at H-paniculata_contig7078:9232..10964+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7078.15040.1 ID=mRNA_H-paniculata_contig7078.15040.1|Name=mRNA_H-paniculata_contig7078.15040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at H-paniculata_contig7078:9232..10964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7078:9232..10964+ >mRNA_H-paniculata_contig7078.15040.1 ID=mRNA_H-paniculata_contig7078.15040.1|Name=mRNA_H-paniculata_contig7078.15040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig7078:9232..10964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |