mRNA_H-paniculata_contig7078.15038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7078.15038.1
Unique NamemRNA_H-paniculata_contig7078.15038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KNZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.590e-13
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+P +  WK T KI+ Y+    H  L Y + D + V  +  +DA
Sbjct:   13 EVVGSLMWIANQTRPDISNALRAVAGHSHEPKKRHWKVTQKIMNYLLDTAHQTLKYKQDDRVEVGTLVYVDA 84
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BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5J5X0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5X0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.760e-12
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 2 
Query:  617 EFEGLVAAGTFSGVTEARKRRRDYAGCEVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            E  G++A     G  + + R       EVVGS MWIA QTRPDI+NA RAV   SH+P +  WKA  KIL Y+   THL L Y +   + V  +  +DA
Sbjct:  329 EVLGMIAIHVRDGGEDVQFR-------EVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETTHLALKYKQDTLVAVGTLVYVDA 420
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BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5JGM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.370e-12
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+P +  WKAT KIL ++    H  L Y + D++ V  +  +DA
Sbjct:   13 EVVGSLMWIANQTRPDISNAVRAVARQSHEPKKSHWKATQKILSFLLETAHQALKYKQDDTVEVGTLVYVDA 84
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BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.280e-12
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAVV  SH+P +  WKA  KIL Y+    HL L +   +S++   +  +DA
Sbjct:  109 EVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDA 180
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.800e-12
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            +VVGS MWIA QTRPDI+NA RAV   SH+PN+  WKA  KIL Y+    HL L Y +   ++V  +  +DA
Sbjct:  441 DVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDA 512
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KEI7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.220e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NAARAV   SH+P +  WKA  KIL Y+    H  L   + D++ V  +  +DA
Sbjct:  117 EVVGSLMWIANQTRPDISNAARAVARHSHEPKKSHWKAAQKILNYLLETAHHTLKCKQDDTVEVGTLVYVDA 188
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.390e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+P +  WKA  KIL Y+    HL L +   +S++   +  +DA
Sbjct:  740 EVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDA 811
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.600e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+P +  WKA  KIL Y+    HL L +    S++   +  +DA
Sbjct:  274 EVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLVYVDA 345
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.610e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+P +  WKA  KIL Y+    HL L +   +S++   +  +DA
Sbjct: 1007 EVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDA 1078
[Close]
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.260e-11
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  698 EVVGSRMWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTYSRQDSLNVEVVFDLDA 913
            EVVGS MWIA QTRPDI+NA RAV   SH+  +  WKA  KIL Y+    HL   Y +   ++V  +  +DA
Sbjct:   13 EVVGSLMWIANQTRPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLVYVDA 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7078.15038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNZ2_9PHAE5.590e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5X0_9PHAE2.760e-1243.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGM1_9PHAE3.370e-1251.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM6_9PHAE5.280e-1251.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE6.800e-1251.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEI7_9PHAE3.220e-1151.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE3.390e-1150.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JQD0_9PHAE3.600e-1150.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE3.610e-1150.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KA29_9PHAE4.260e-1148.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7078contigH-paniculata_contig7078:3299..4862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size914
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7078.15038.1prot_H-paniculata_contig7078.15038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7078 4665..4862 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.9900186-UTR-H-paniculata_contig7078:3298..39621622930854.9900186-UTR-H-paniculata_contig7078:3298..3962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 3299..3962 +
1691481482.7621593-UTR-H-paniculata_contig7078:3298..39621691481482.7621593-UTR-H-paniculata_contig7078:3298..3962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 3299..3962 +
1622930855.006453-UTR-H-paniculata_contig7078:4613..46641622930855.006453-UTR-H-paniculata_contig7078:4613..4664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 4614..4664 +
1691481482.7744405-UTR-H-paniculata_contig7078:4613..46641691481482.7744405-UTR-H-paniculata_contig7078:4613..4664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7078 4614..4664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930855.0215714-CDS-H-paniculata_contig7078:4664..48621622930855.0215714-CDS-H-paniculata_contig7078:4664..4862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 4665..4862 +
1691481482.7846868-CDS-H-paniculata_contig7078:4664..48621691481482.7846868-CDS-H-paniculata_contig7078:4664..4862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7078 4665..4862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7078.15038.1

>prot_H-paniculata_contig7078.15038.1 ID=prot_H-paniculata_contig7078.15038.1|Name=mRNA_H-paniculata_contig7078.15038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MWIAGQTRPDIANAARAVVTFSHDPNEVRWKATCKILEYMDAMTHLGLTY
SRQDSLNVEVVFDLDA
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mRNA from alignment at H-paniculata_contig7078:3299..4862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7078.15038.1 ID=mRNA_H-paniculata_contig7078.15038.1|Name=mRNA_H-paniculata_contig7078.15038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1564bp|location=Sequence derived from alignment at H-paniculata_contig7078:3299..4862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGGTTAGAGGTGCTGGATCAGGGAGGGAACAACACATTGCCACAGG
ACCACTTCAGCCCTCCTTCGCCACAGCCGTTGCCGTTCGTAGGGAGAGGA
ATTCCTCATCGGCGGCGGACAACTATTCCAGTATTTTCGGAGACAGAGAG
ATCGGAAGTTGGGTCTATTGATGACGAGGCAAATTCTGCCGGCGCAATCG
TGTCACCGCTCGACACGTCGGAGTTGGAGAGTGAACGCGATTCTATAGGG
AGTGGCTCATCGTTAGGAGGAAGCGAACTAATATCGTCGGGTGAGAAAGA
CCCGATACCCACAGCGGTACGGACAGCGGCGCATCAGCTTGGAACTCACA
TTCCAGGTCCATGCGACGATGATGATTTCCGCGGTAGGAAAAGACAAGAG
ACCAGAGCACTACAGCAGTCAAAGTCGGCAGGGTTGATCGCCATTCTGAG
ACCCAGTGAAAGGGGTCGGATTGTTCATGCCCTGGTGGCGGAGCAAGTGA
TCGAGTCAGACGGTCCGCCCAAGTGCACCATTGCCGAAACGGAGCCAGAG
CCTACGCCCTTTGCTGTTACATGCACCTCGAAGTACACCGACGTTTGAAA
GAAGTCGGTGGATTCAGAGTTTGAGGGACTTGTAGCAGCGGGAACGTTTT
CTGGAGTAACAGAGGTACCAGAGAGATGTAATGTTGTGAATGCGAAATGG
GTGTAAAAGTGGAAGTGCGATCCACACGGCATGATTGTTAGCAAAACCTA
GAATGGTGGGGTAGGGATACAGCCAGCTAGAAGGTATCGACAACCACGCG
AGTTTCGCTTCTACAGCGTCGGCAGCATCCAATAGACTTTTGGCGGTGAT
CGGGTGTTTGCTTGACTGGGATTTGAGATACTTCGATTTATAACAGGCAT
CTGGATGCAGTTCGATGTCTGGCAAGGTGGTGTGCTGAACAAATCCATTT
ACGGCCTGAAGCAGGCAAGCAGGTCGTGGTATCAGTTGCTCGTGTCTACA
CTAAAGAAAATTGGGTCCATGCGTGTTGAGACTCATGGTAGGAGGAGAGG
TCATCGCAATGATCGCAGTTCACGTCGATGATATTCAGGTTGGAGCTTCC
GAGGAGGTAGCGGAGACAGTGATCGAATGTCTCAACTTCAGGTTTCCAAC
GACGAATATCGGCGAACTGACATGGTATATGGGGAGTGAGTACAAGCTTG
ACAGGGTAAGAGGAACTTGGGAGATTTCTCAAACTCAATTCGTCTGCAAT
GTGTTTGACCGCTTTCCATTAACAAAATTCAGCCCGATTCCTACTTCTCC
ATCACTGGATCTCAGGCACGTAAGCGACGACGAGACTATGCTGGATGTGA
AGTGGTAGGGAGCCGTATGTGGATCGCCGGTCAGACGAGGCCCGATATCG
CCAACGCAGCACGGGCGGTGGTGACGTTCTCTCATGATCCGAACGAGGTC
CGCTGGAAGGCGACCTGCAAAATACTTGAGTATATGGACGCCATGACACA
CCTCGGTCTCACGTACAGTAGACAAGATTCTCTAAACGTAGAGGTTGTTT
TTGATCTTGATGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7078:3299..4862+

>mRNA_H-paniculata_contig7078.15038.1 ID=mRNA_H-paniculata_contig7078.15038.1|Name=mRNA_H-paniculata_contig7078.15038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig7078:3299..4862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGATCGCCGGTCAGACGAGGCCCGATATCGCCAACGCAGCACGGGC
GGTGGTGACGTTCTCTCATGATCCGAACGAGGTCCGCTGGAAGGCGACCT
GCAAAATACTTGAGTATATGGACGCCATGACACACCTCGGTCTCACGTAC
AGTAGACAAGATTCTCTAAACGTAGAGGTTGTTTTTGATCTTGATGCCAT
GTGGATCGCCGGTCAGACGAGGCCCGATATCGCCAACGCAGCACGGGCGG
TGGTGACGTTCTCTCATGATCCGAACGAGGTCCGCTGGAAGGCGACCTGC
AAAATACTTGAGTATATGGACGCCATGACACACCTCGGTCTCACGTACAG
TAGACAAGATTCTCTAAACGTAGAGGTTGTTTTTGATCTTGATGCC
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