mRNA_H-paniculata_contig7067.15027.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7067.15027.1
Unique NamemRNA_H-paniculata_contig7067.15027.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7067.15027.1 vs. uniprot
Match: A0A6H5JFF7_9PHAE (DUF4209 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.720e-12
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:  423 RISPSTNVVNVFSLPQIGCLAGLCRSSSNIARGLAARIIELEREMTSGTARSGQRRAYAATLMVAPTLLCFLAQTV 650
            RISP TNV+    LPQ   +A LC++ +  A GL  RI ELE  ++SG+ARSGQRRAYA TL VAPT+L FLA TV
Sbjct:  868 RISPPTNVITCAPLPQRQMMATLCKACAESALGLRERIAELEALLSSGSARSGQRRAYATTLQVAPTILRFLASTV 943
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7067.15027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFF7_9PHAE1.720e-1259.21DUF4209 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7067contigH-paniculata_contig7067:9799..11155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1357
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7067.15027.1prot_H-paniculata_contig7067.15027.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7067 9906..10982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.5029325-UTR-H-paniculata_contig7067:9798..99051622930853.5029325-UTR-H-paniculata_contig7067:9798..9905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7067 9799..9905 +
1691481481.9999669-UTR-H-paniculata_contig7067:9798..99051691481481.9999669-UTR-H-paniculata_contig7067:9798..9905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7067 9799..9905 +
1622930853.545637-UTR-H-paniculata_contig7067:10982..111551622930853.545637-UTR-H-paniculata_contig7067:10982..11155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7067 10983..11155 +
1691481482.0362678-UTR-H-paniculata_contig7067:10982..111551691481482.0362678-UTR-H-paniculata_contig7067:10982..11155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7067 10983..11155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.5285528-CDS-H-paniculata_contig7067:9905..109821622930853.5285528-CDS-H-paniculata_contig7067:9905..10982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7067 9906..10982 +
1691481482.0238593-CDS-H-paniculata_contig7067:9905..109821691481482.0238593-CDS-H-paniculata_contig7067:9905..10982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7067 9906..10982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7067.15027.1

>prot_H-paniculata_contig7067.15027.1 ID=prot_H-paniculata_contig7067.15027.1|Name=mRNA_H-paniculata_contig7067.15027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=359bp
MSNMEGGITSDEERRSESEARSLSVTDELVFRAKPREGLLHGNGTNISFH
DGAAGNDTGVSARGDDDGGQRFPSQRISSGKNLPVKGKSTVRTGIWLKEQ
VRTPRRISPSTNVVNVFSLPQIGCLAGLCRSSSNIARGLAARIIELEREM
TSGTARSGQRRAYAATLMVAPTLLCFLAQTVVTVEAFVLEWDTRNSVTAA
SGISGHAPTVDNDQDRETIGHRGSTVSCPRASKRKEKRDESIGERRSGGE
VRSIHEELKKPGGASSSVVADQLSFLRRLTAVIGALGLCVSVIDADSSGQ
CSDGNVVKKEEEDTSSSNVSTPVIERTGRKGYVQALTELAVFLETKIANR
GFSGRGSV*
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mRNA from alignment at H-paniculata_contig7067:9799..11155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7067.15027.1 ID=mRNA_H-paniculata_contig7067.15027.1|Name=mRNA_H-paniculata_contig7067.15027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1357bp|location=Sequence derived from alignment at H-paniculata_contig7067:9799..11155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCTACCTGGACGAGCAGTGGTCATCGAAGCGTGGAGGGTGGTACGGAT
CACGCCGTCGGAAACGTGACATCTGGAGTTCGTCTTCCAGCACGAGGGGA
GCACAAAATGTCAAACATGGAGGGTGGCATCACATCAGATGAAGAGCGGC
GCTCCGAAAGTGAAGCCAGAAGCCTCAGTGTTACCGATGAGCTTGTATTT
CGGGCAAAGCCGAGGGAGGGGCTGTTGCACGGGAACGGTACGAATATTTC
ATTTCATGACGGTGCTGCTGGCAATGATACCGGAGTTTCGGCGCGTGGCG
ATGATGATGGGGGACAAAGGTTTCCTTCCCAAAGAATATCCAGCGGGAAG
AATCTTCCAGTAAAGGGTAAATCCACAGTAAGAACAGGAATATGGCTAAA
AGAGCAGGTCCGTACACCCAGGCGAATCTCTCCGTCAACGAATGTTGTCA
ACGTGTTTTCTCTGCCCCAAATCGGTTGCCTAGCGGGACTCTGCCGCTCA
AGCTCCAATATCGCGCGCGGACTAGCAGCCCGCATTATCGAGCTTGAGAG
AGAAATGACATCGGGCACCGCGCGCTCGGGGCAGCGTCGCGCGTACGCTG
CTACCCTCATGGTTGCTCCGACCTTGCTATGTTTTCTTGCGCAGACTGTC
GTCACCGTAGAGGCGTTTGTGCTGGAGTGGGACACGCGGAATAGCGTTAC
CGCTGCCAGCGGTATTTCCGGCCACGCTCCGACCGTTGATAATGATCAGG
ACAGGGAAACTATCGGGCATAGGGGCAGCACTGTATCATGCCCACGAGCA
AGCAAAAGAAAAGAGAAGAGAGATGAATCAATTGGCGAGCGACGGTCGGG
CGGTGAGGTACGGTCTATCCACGAAGAACTGAAGAAGCCGGGTGGTGCGA
GTAGTTCGGTGGTGGCAGATCAATTAAGTTTCCTTCGTCGACTGACAGCA
GTCATTGGAGCACTTGGTTTGTGCGTTTCGGTCATTGACGCCGATTCTTC
AGGGCAATGCAGTGATGGGAACGTGGTCAAAAAGGAGGAAGAAGATACTA
GCTCCTCCAATGTCTCGACTCCAGTGATAGAAAGGACGGGCCGGAAGGGC
TACGTCCAGGCTTTGACGGAGCTTGCGGTATTTCTTGAAACAAAGATAGC
TAACAGAGGATTCTCAGGGAGAGGGTCAGTGTAGATTTTCGCCGCAATGA
TGTGGCATTCATTTTTTCCCCTCTCTAAATTGCTTGAATGAATGGACCTC
TAGTAGGTAACTAATTAGATAGGAGAAAGCAGATACGGACCGGTATGACA
GCAAGTAAGGTATGCCGTGATATTCCTAATTATTTGGTTGGGTATGATGC
TTCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7067:9799..11155+

>mRNA_H-paniculata_contig7067.15027.1 ID=mRNA_H-paniculata_contig7067.15027.1|Name=mRNA_H-paniculata_contig7067.15027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2154bp|location=Sequence derived from alignment at H-paniculata_contig7067:9799..11155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAACATGGAGGGTGGCATCACATCAGATGAAGAGCGGCGCTCCGA
AAGTGAAGCCAGAAGCCTCAGTGTTACCGATGAGCTTGTATTTCGGGCAA
AGCCGAGGGAGGGGCTGTTGCACGGGAACGGTACGAATATTTCATTTCAT
GACGGTGCTGCTGGCAATGATACCGGAGTTTCGGCGCGTGGCGATGATGA
TGGGGGACAAAGGTTTCCTTCCCAAAGAATATCCAGCGGGAAGAATCTTC
CAGTAAAGGGTAAATCCACAGTAAGAACAGGAATATGGCTAAAAGAGCAG
GTCCGTACACCCAGGCGAATCTCTCCGTCAACGAATGTTGTCAACGTGTT
TTCTCTGCCCCAAATCGGTTGCCTAGCGGGACTCTGCCGCTCAAGCTCCA
ATATCGCGCGCGGACTAGCAGCCCGCATTATCGAGCTTGAGAGAGAAATG
ACATCGGGCACCGCGCGCTCGGGGCAGCGTCGCGCGTACGCTGCTACCCT
CATGGTTGCTCCGACCTTGCTATGTTTTCTTGCGCAGACTGTCGTCACCG
TAGAGGCGTTTGTGCTGGAGTGGGACACGCGGAATAGCGTTACCGCTGCC
AGCGGTATTTCCGGCCACGCTCCGACCGTTGATAATGATCAGGACAGGGA
AACTATCGGGCATAGGGGCAGCACTGTATCATGCCCACGAGCAAGCAAAA
GAAAAGAGAAGAGAGATGAATCAATTGGCGAGCGACGGTCGGGCGGTGAG
GTACGGTCTATCCACGAAGAACTGAAGAAGCCGGGTGGTGCGAGTAGTTC
GGTGGTGGCAGATCAATTAAGTTTCCTTCGTCGACTGACAGCAGTCATTG
GAGCACTTGGTTTGTGCGTTTCGGTCATTGACGCCGATTCTTCAGGGCAA
TGCAGTGATGGGAACGTGGTCAAAAAGGAGGAAGAAGATACTAGCTCCTC
CAATGTCTCGACTCCAGTGATAGAAAGGACGGGCCGGAAGGGCTACGTCC
AGGCTTTGACGGAGCTTGCGGTATTTCTTGAAACAAAGATAGCTAACAGA
GGATTCTCAGGGAGAGGGTCAGTGTAGATGTCAAACATGGAGGGTGGCAT
CACATCAGATGAAGAGCGGCGCTCCGAAAGTGAAGCCAGAAGCCTCAGTG
TTACCGATGAGCTTGTATTTCGGGCAAAGCCGAGGGAGGGGCTGTTGCAC
GGGAACGGTACGAATATTTCATTTCATGACGGTGCTGCTGGCAATGATAC
CGGAGTTTCGGCGCGTGGCGATGATGATGGGGGACAAAGGTTTCCTTCCC
AAAGAATATCCAGCGGGAAGAATCTTCCAGTAAAGGGTAAATCCACAGTA
AGAACAGGAATATGGCTAAAAGAGCAGGTCCGTACACCCAGGCGAATCTC
TCCGTCAACGAATGTTGTCAACGTGTTTTCTCTGCCCCAAATCGGTTGCC
TAGCGGGACTCTGCCGCTCAAGCTCCAATATCGCGCGCGGACTAGCAGCC
CGCATTATCGAGCTTGAGAGAGAAATGACATCGGGCACCGCGCGCTCGGG
GCAGCGTCGCGCGTACGCTGCTACCCTCATGGTTGCTCCGACCTTGCTAT
GTTTTCTTGCGCAGACTGTCGTCACCGTAGAGGCGTTTGTGCTGGAGTGG
GACACGCGGAATAGCGTTACCGCTGCCAGCGGTATTTCCGGCCACGCTCC
GACCGTTGATAATGATCAGGACAGGGAAACTATCGGGCATAGGGGCAGCA
CTGTATCATGCCCACGAGCAAGCAAAAGAAAAGAGAAGAGAGATGAATCA
ATTGGCGAGCGACGGTCGGGCGGTGAGGTACGGTCTATCCACGAAGAACT
GAAGAAGCCGGGTGGTGCGAGTAGTTCGGTGGTGGCAGATCAATTAAGTT
TCCTTCGTCGACTGACAGCAGTCATTGGAGCACTTGGTTTGTGCGTTTCG
GTCATTGACGCCGATTCTTCAGGGCAATGCAGTGATGGGAACGTGGTCAA
AAAGGAGGAAGAAGATACTAGCTCCTCCAATGTCTCGACTCCAGTGATAG
AAAGGACGGGCCGGAAGGGCTACGTCCAGGCTTTGACGGAGCTTGCGGTA
TTTCTTGAAACAAAGATAGCTAACAGAGGATTCTCAGGGAGAGGGTCAGT
GTAG
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