mRNA_H-paniculata_contig706.15023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig706.15023.1
Unique NamemRNA_H-paniculata_contig706.15023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig706.15023.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.080e-19
Identity = 76/207 (36.71%), Postives = 92/207 (44.44%), Query Frame = 3 
Query:    9 DPEALEAALFLPVKRWGNARDPFYASGTSESTKEPEHAFAHRRCATDIPSPSLSTLPTTPFTGNIADISISQHRSADRIFNGDEKTTNAAHEETEETVCSRSGRARDNSDGSNIVLHLWIGVGGSAEAVTFAVERLAVGTAQEQGLSPVWAVLDCAGSANASPMFGTVDLKRQVKLLPGQCKVIQHLVPAFAGLEWSWKHAPLIVNT 629
            DPE LEAA+ LP++RWG    P Y    S    E      H R    I S S  T  TT      A  +          FN   +T +                       S ++L++  G  G+  AVTF V+              V A LDC GS NASPM G++ L R+V LLPGQ KVIQHLVP      WSWKHAPL V+T
Sbjct:  976 DPELLEAAVALPIQRWGYP-SPGYPDLASPPPVE------HSRALATIASGSNKTGATTTAEMETATTASVTGHEITATFNNASRTDDXXXXXXXXXXXXXXXXXXXXXK-SGLLLYVRPGPKGAENAVTFLVQS-------PIHFFSVRARLDCTGSVNASPMPGSIGLSREVTLLPGQSKVIQHLVPTDPRTPWSWKHAPLTVDT 1167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig706.15023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI5.080e-1936.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig706contigH-paniculata_contig706:175..1446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog2880.D7G3H8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size737
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig706.15023.1prot_H-paniculata_contig706.15023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig706 180..1368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.1447613-UTR-H-paniculata_contig706:174..1791622930853.1447613-UTR-H-paniculata_contig706:174..179Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig706 175..179 +
1691481481.8569694-UTR-H-paniculata_contig706:174..1791691481481.8569694-UTR-H-paniculata_contig706:174..179Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig706 175..179 +
1622930853.2129996-UTR-H-paniculata_contig706:1368..14461622930853.2129996-UTR-H-paniculata_contig706:1368..1446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig706 1369..1446 +
1691481481.8904479-UTR-H-paniculata_contig706:1368..14461691481481.8904479-UTR-H-paniculata_contig706:1368..1446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig706 1369..1446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.156553-CDS-H-paniculata_contig706:179..7011622930853.156553-CDS-H-paniculata_contig706:179..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig706 180..701 +
1691481481.8695486-CDS-H-paniculata_contig706:179..7011691481481.8695486-CDS-H-paniculata_contig706:179..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig706 180..701 +
1622930853.1982913-CDS-H-paniculata_contig706:1236..13681622930853.1982913-CDS-H-paniculata_contig706:1236..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig706 1237..1368 +
1691481481.8814306-CDS-H-paniculata_contig706:1236..13681691481481.8814306-CDS-H-paniculata_contig706:1236..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig706 1237..1368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig706.15023.1

>prot_H-paniculata_contig706.15023.1 ID=prot_H-paniculata_contig706.15023.1|Name=mRNA_H-paniculata_contig706.15023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MDPEALEAALFLPVKRWGNARDPFYASGTSESTKEPEHAFAHRRCATDIP
SPSLSTLPTTPFTGNIADISISQHRSADRIFNGDEKTTNAAHEETEETVC
SRSGRARDNSDGSNIVLHLWIGVGGSAEAVTFAVERLAVGTAQEQGLSPV
WAVLDCAGSANASPMFGTVDLKRQVKLLPGQCKVIQHLVPAFAGLEWSWK
HAPLIVNTFELSKPDVV*
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mRNA from alignment at H-paniculata_contig706:175..1446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig706.15023.1 ID=mRNA_H-paniculata_contig706.15023.1|Name=mRNA_H-paniculata_contig706.15023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig706:175..1446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGATGGACCCTGAGGCGCTTGAGGCTGCTCTATTCCTTCCTGTGAAA
CGTTGGGGAAACGCACGTGACCCTTTCTATGCCAGCGGCACCTCGGAATC
GACAAAAGAGCCTGAACATGCTTTTGCACATCGTAGATGTGCAACTGATA
TACCCTCGCCTTCGCTGTCTACCCTACCAACGACACCTTTTACTGGAAAC
ATCGCCGACATCAGTATCTCTCAACACAGATCTGCTGACAGGATCTTCAA
TGGTGATGAGAAAACAACAAACGCAGCACACGAGGAAACAGAGGAGACGG
TTTGTAGTAGGAGCGGCAGGGCAAGGGACAACAGCGATGGTAGCAACATT
GTGCTGCACTTGTGGATAGGAGTGGGAGGTAGTGCGGAAGCTGTAACGTT
TGCCGTGGAGCGCTTGGCAGTCGGCACGGCGCAAGAGCAGGGACTGAGCC
CGGTATGGGCCGTTTTGGATTGTGCAGGCAGTGCAAACGCTTCTCCTATG
TTTGGCACGGTCGACCTTAAGCGTCAGGTAAGCGAAGTATCTGGGTGGCG
GCTGACGGACACACTTCCTCGAAGGATCATCCATGCTCTTCGCGAAGCTC
AGAGTCGAAGTAAGGTCGCGGATTTATTTCGTTATTGTGTTATTAACAGC
CGCTCACCACCGAATGATAACGGAGGAGCTCCAACAAGATACCTTCGTCA
CTCGATCAGCGGAGAGCCTGCTCGTTCGCAGTTTCCATATTTCGCAGCGA
AACGTCGTCGGACCCAAAACATCGGAACGCTCAGCATCTTTCATTTTTGT
CTTCTATTTGTTGAACAACGTTCAGATGTTTTTGGTTTGTTTGGCTTGTT
ATGTCGAATGGTTGTCAGTCGACTCATTATCGTGCGAGATCGTACAATGA
CGCCTAACTAGAGTTTGATGGGTTTCGGGACAAGTAGACCGATCGCCGTT
TAGGCAGGGGAAAGCGGTAGGAATTATTCGTATGCCCGGCTAGAAATGTT
TCTGTTTCAATGGATCCCGACATGTTGTTTTCGTCTCTCGTGAAACGATG
AACGTTCAGCAGGTGAAGCTGCTACCTGGACAATGTAAGGTCATCCAACA
CCTCGTACCGGCCTTTGCGGGACTTGAATGGTCGTGGAAGCACGCCCCAT
TGATTGTCAACACCTTCGAACTGAGTAAACCCGACGTAGTGTAAGAGATA
AATACGTAGCTTGAAACAAACGGTGCAGAGTCATCTGCAGGGGGAGTGCG
ACCGTACCTCAATCGATTGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig706:175..1446+

>mRNA_H-paniculata_contig706.15023.1 ID=mRNA_H-paniculata_contig706.15023.1|Name=mRNA_H-paniculata_contig706.15023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig706:175..1446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCCTGAGGCGCTTGAGGCTGCTCTATTCCTTCCTGTGAAACGTTG
GGGAAACGCACGTGACCCTTTCTATGCCAGCGGCACCTCGGAATCGACAA
AAGAGCCTGAACATGCTTTTGCACATCGTAGATGTGCAACTGATATACCC
TCGCCTTCGCTGTCTACCCTACCAACGACACCTTTTACTGGAAACATCGC
CGACATCAGTATCTCTCAACACAGATCTGCTGACAGGATCTTCAATGGTG
ATGAGAAAACAACAAACGCAGCACACGAGGAAACAGAGGAGACGGTTTGT
AGTAGGAGCGGCAGGGCAAGGGACAACAGCGATGGTAGCAACATTGTGCT
GCACTTGTGGATAGGAGTGGGAGGTAGTGCGGAAGCTGTAACGTTTGCCG
TGGAGCGCTTGGCAGTCGGCACGGCGCAAGAGCAGGGACTGAGCCCGGTA
TGGGCCGTTTTGGATTGTGCAGGCAGTGCAAACGCTTCTCCTATGTTTGG
CACGGTCGACCTTAAGCGTCAGATGGACCCTGAGGCGCTTGAGGCTGCTC
TATTCCTTCCTGTGAAACGTTGGGGAAACGCACGTGACCCTTTCTATGCC
AGCGGCACCTCGGAATCGACAAAAGAGCCTGAACATGCTTTTGCACATCG
TAGATGTGCAACTGATATACCCTCGCCTTCGCTGTCTACCCTACCAACGA
CACCTTTTACTGGAAACATCGCCGACATCAGTATCTCTCAACACAGATCT
GCTGACAGGATCTTCAATGGTGATGAGAAAACAACAAACGCAGCACACGA
GGAAACAGAGGAGACGGTTTGTAGTAGGAGCGGCAGGGCAAGGGACAACA
GCGATGGTAGCAACATTGTGCTGCACTTGTGGATAGGAGTGGGAGGTAGT
GCGGAAGCTGTAACGTTTGCCGTGGAGCGCTTGGCAGTCGGCACGGCGCA
AGAGCAGGGACTGAGCCCGGTATGGGCCGTTTTGGATTGTGCAGGCAGTG
CAAACGCTTCTCCTATGTTTGGCACGGTCGACCTTAAGCGTCAGGTGAAG
CTGCTACCTGGACAATGTAAGGTCATCCAACACCTCGTACCGGCCTTTGC
GGGACTTGAATGGTCGTGGAAGCACGCCCCATTGATTGTCAACACCTTCG
AACTGAGTAAACCCGACGTAGTGTAAGTGAAGCTGCTACCTGGACAATGT
AAGGTCATCCAACACCTCGTACCGGCCTTTGCGGGACTTGAATGGTCGTG
GAAGCACGCCCCATTGATTGTCAACACCTTCGAACTGAGTAAACCCGACG
TAGTGTAA
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