mRNA_H-paniculata_contig7052.15014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7052.15014.1
Unique NamemRNA_H-paniculata_contig7052.15014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7052.15014.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.460e-15
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 KQAVGRVHRLGQTRAVKVTKLVLKDSLETRALALQRRQDTQEESGSSSVAGRSVGVAGSLAVDNATGLKIDD 216
            KQAVGRV+RLGQTR V VTKLVLKDS+ETR LALQ++Q T E S S++V   S G+AG++A DNA  LKID+
Sbjct: 1240 KQAVGRVYRLGQTRPVTVTKLVLKDSIETRILALQKKQAT-EGSASAAVGAGSNGIAGNIARDNAKNLKIDE 1310
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BLAST of mRNA_H-paniculata_contig7052.15014.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.300e-12
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 KQAVGRVHRLGQTRAVKVTKLVLKDSLETRALALQRRQDTQEESGSSSVA------GRSVGVAGSLAVDNATGLKIDD 216
            KQA+GRV+RLGQTR V VTKLVLKDS+ETR LALQ++Q T+   GS+S A        S GVAG++A DNA  LKI +
Sbjct: 1204 KQAIGRVYRLGQTRPVTVTKLVLKDSIETRILALQKKQATE---GSASAAVGAPSSSSSDGVAGNIARDNAKDLKIGE 1278
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BLAST of mRNA_H-paniculata_contig7052.15014.1 vs. uniprot
Match: D7G0T7_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.940e-10
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 KQAVGRVHRLGQTRAVKVTKLVLKDSLETRALALQRRQDTQEESGSSSVAGRSVGVAGSLAVDNATGLKIDD 216
            KQA+GRVHRLGQTR V VTKLVL DS+ETR LA+++ Q     S  SS+     G AGSLA ++A  LK+ +
Sbjct:  145 KQAIGRVHRLGQTRPVTVTKLVLADSVETRILAMRKMQARGGGSAGSSLFNAQGGPAGSLAREDARHLKVGE 216
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BLAST of mRNA_H-paniculata_contig7052.15014.1 vs. uniprot
Match: A0A835YWG4_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-5
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    4 QAVGRVHRLGQTRAVKVTKLVLKDSLETRALALQRRQDTQEESGSSSVAGRSVGVAGSLAVDNATGLKIDD 216
            QA+GRVHRLGQTRAV V KL ++ S+E+R +A+Q  +  +   GS     R    AGS++ D A  L+I D
Sbjct: 1446 QAIGRVHRLGQTRAVHVVKLYMEASVESRIIAMQTAKSDRAAQGSDE--DRPATAAGSISKDGAKELRIKD 1514
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7052.15014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KW09_9PHAE6.460e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S9_ECTSI4.300e-1260.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T7_ECTSI3.940e-1055.56Helicase C-terminal domain-containing protein n=1 ... [more]
A0A835YWG4_9STRA1.200e-546.48SNF2 family N-terminal domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7052contigH-paniculata_contig7052:7317..11368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D7G0S9
KEGG koko:K01259,ko:K15505,ko:K15711
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27,3.4.11.5
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Exons3
Model size420
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7052.15014.1prot_H-paniculata_contig7052.15014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7052 7478..11368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.3251774-UTR-H-paniculata_contig7052:7316..74771622930852.3251774-UTR-H-paniculata_contig7052:7316..7477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7052 7317..7477 -
1691481481.4527595-UTR-H-paniculata_contig7052:7316..74771691481481.4527595-UTR-H-paniculata_contig7052:7316..7477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7052 7317..7477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.3418767-CDS-H-paniculata_contig7052:7477..75201622930852.3418767-CDS-H-paniculata_contig7052:7477..7520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 7478..7520 -
1691481481.4667106-CDS-H-paniculata_contig7052:7477..75201691481481.4667106-CDS-H-paniculata_contig7052:7477..7520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 7478..7520 -
1622930852.3553548-CDS-H-paniculata_contig7052:10073..101241622930852.3553548-CDS-H-paniculata_contig7052:10073..10124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 10074..10124 -
1691481481.4769633-CDS-H-paniculata_contig7052:10073..101241691481481.4769633-CDS-H-paniculata_contig7052:10073..10124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 10074..10124 -
1622930852.3679218-CDS-H-paniculata_contig7052:11204..113681622930852.3679218-CDS-H-paniculata_contig7052:11204..11368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 11205..11368 -
1691481481.4898827-CDS-H-paniculata_contig7052:11204..113681691481481.4898827-CDS-H-paniculata_contig7052:11204..11368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7052 11205..11368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7052.15014.1

>prot_H-paniculata_contig7052.15014.1 ID=prot_H-paniculata_contig7052.15014.1|Name=mRNA_H-paniculata_contig7052.15014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
KQAVGRVHRLGQTRAVKVTKLVLKDSLETRALALQRRQDTQEESGSSSVA
GRSVGVAGSLAVDNATGLKIDDVRCGHFRLIVQRR*
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mRNA from alignment at H-paniculata_contig7052:7317..11368-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7052.15014.1 ID=mRNA_H-paniculata_contig7052.15014.1|Name=mRNA_H-paniculata_contig7052.15014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4052bp|location=Sequence derived from alignment at H-paniculata_contig7052:7317..11368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAGCTGTCGGAAGGGTGCACAGGCTAGGGCAGACCCGTGCCGTGAA
GGTCACCAAGCTCGTCCTCAAGGACTCACTCGAGACTCGCGCTCTGGCCT
TGCAGCGGAGACAGGACACACAGGAGGAGTCTGGCTCGTCCTCGGTGGCT
GGACGGAGTGTCGGGTGTGCACGTCCTCGTTGCCACGATTAGTCCTTGTT
TGTCATTACAGAGGCACTTAGCCACATGTGTTTTGTCATTTTTCCCGAAT
CGTTCGCATTTTGTTTGGGTGAAATTCCAAAGTTCTTGGTGAAGTAATGA
CCTTGAGCAGATTGCTGCAAAGACATTGGGAAGGAAGCGGGTGTCTCGAA
AAGGCCATGTTTTGTCGTACAGGCATATGCGGCAGTCTCGAAACCGGTCT
CAAAAAATGGCTCAATTTCGACCAGAAGTTGAATTACGATTTTCTCGATA
TCGGAAATCGGAATAATCCGTAGAATGCTCCTTTAGATGTATTTTATTTG
ATCGTACGCACACCCTGTGAAATTACGTACGTGCGGAGATCTGGGTCGCT
GGACTGAGGGGTGTTGGGTGAAGTTTTTATTCTTTTCATGTGATGGTCAG
GTGATGTAGGCGTTATTTGCTCCATAACATTGTCCTCTTTCGTTTAGATT
TTTTCGGTAAGAATGCGTGAGCAAGTTATCCGATCAGAGGGGGCTGTGCC
CCCAAGTAATGCTTATTGGTATGTGTGCACCAAATGTAAGTATGCTCCAT
TAGACATATCAACTTCTTGCGTCAATGATTCTAAACTTTGTGTAGCCAGA
TTTTCCATATTGACAGCATCAATATTTTGCCTTACTTACCACAATGAACA
GGATTACCCCTGAGCTTTGAGCGTCATCTTCCTTGTTCAGTGACTCCGGT
AAACGGTGATGATGATGATGATGGCGTTCATCAGGACAGTCGTGATGATC
TGTTCCATTTTTTTTTTTCAATTGTGTGACATAACACGAAACGGTTTGTA
ACGTAAACGTGGATGCTACATCGGCAGCCAATATATATGTATATATATTT
TCTGACTGAGACAAATGAGGGAAACGGTAAACATAGACACCATGTTCACT
CACTCCTCTTCTTTCGAACCGTACACTGACTAGGACGAGTCGAACCTGAC
CTTTCGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
TACCCAATCCCTGTCTCCTCGATGCCTCTGTTTTCTCTTTGCAGAGTGGC
AGGAAGCCTGGCGGTGGACAACGCCACGGGCCTCAAGATCGACGAGTGAG
TGAAGCAGTTTATAACTAGGCACGGGACCTTCACGGGACTGGACGGGTCG
TAGAGACTACGGTTTCGTCCCATCTCGTCTTGGCCTAATCTCAACCGCAA
TGTTCCATACCAAGCCGTGCAACTTTGAAGCCTCGTTGTCGTCGTGTCCC
GTTACAAGTCAAATATACTACTTCTGTCCGGTCCCTTGAGGCTCCCGTGA
TGAGCCCTGTTTATAGGCGCTTGACTTCCTCTTAGCCAAAACTTGCGTAG
TCACAATTGGACAACTAATACAGTAGGAACTTGGTAATAAAGCTTTGACT
CAAAAATACGGGCCGTCTTCACCACCCACTGCCTATCGGAAAATATCCAT
AGTAAATTAGTGCATATTTTGTTCTGTTATTTTCAATTTGCAACGGTGGC
AAAGCTACGAACCATGCCTATGACCCAAATCCCCACCATAATAGTCCACT
TTCCCTTACACCTAGTCTAACCGAGGATCAAATGGGGCCCCATCGTACGT
TGAAAAATTTCTTAACCCGGTGGCGCTCCGTGGCGTGGCAATGACCCTGG
AGTGAATGTGTGGGGGGATCGGGCAGTACCTCGTAGCAAGACCAAATACT
GGCACAACCGTGCATACTTTGTCGACAGGCAGCGGCTAATCACGAACTTG
ATTATCTGTTGGCGTCTGGCTTGTCTGGTGCATGACCAGGTACAACTCGC
TCTTTGGAGTGTCGATCTATGACCCGCCAGCCAAGAAGCCGAGTTACAGC
GCCGGTAAACGCAATGGCTTGGGAAAGCAGTAGTAATAGGGTCTCCGCGT
TCGATGTGTCGTGGTAACAAGTACACTCACAAAAATGTACGGGTGCGATG
TTGGTGTGTGTATGGGAGTGCCCTTATGGTAGGAGGGGGGCGGGGGGGAT
ATCCCTGAAGGGGGTATTACTGTATCACTCGCGTGTACACCGTACCTAAA
CATGATATAGTTTTCATATGAAGGAATGAATGACATCAAGTCCTAAAATA
ACCCCGACTTTTCACCCACCAAGATTTCAACTCCAAGGCCAACCCACGCA
CTTGCCTCAGTCTAGAACTAAGCTCTATCGTACCCATGTTGAGTTTATGC
ACCTGACCTCAAACTTCAGTTATGAACCCTTATCAAGGAGATTGTATCAA
TGAGGGTATCCCGAAAACAATCCTCTTCAGTCTTTCCCTTCGATAGGGAC
GTGTTGCCGCGGCTATGTTTGTTGCTTTTCTTTCATCCCCCGACTGACGG
CTTGCTGCACGTATCGTGGACACAGGGTGCCTGCGTGCCTGCCATGTCAA
TTAGGTGTTACGCACTCGGAGTCTTGTGTGTTCTGTTCGGTTCGTGCGGC
GTGTATGTACATATTTCTCGGGGGTTACCCACATCCGAGGGCGGGTAGTG
CTTGCTCCTCTGGGCGTCAGTGTTCACGGAGTCTTAACCTGTTTTCTCCG
CCTCGGCAACACGGAAACACATGGCCATCGCGTATGATATCACTATGGAT
ATGGGAAACCGCTGTTGAGACAGATGGTACATGGAGTATACGCAGGGAGC
TTGTGGGGACTCTGCCCACAAACCAACTGCAGCGCTCGATATTATGTTTT
TGGTCCGTAGCAGCTTCTCGCGCCCAGACGTCAGTCAAGGCGAACCTGGA
TTTACGGCGGATCAATTGGCCCGATATAGGGTTGATCGCGATTTAACGCG
GCCCCCGTTTGGCTTGTCTCATGTCCGCCTTCATGTTGGAGACCGACGAA
CCAGAGATTGACACCGGCTAAAAAACGATAACCGGTCAAGTGATTTGCCC
ACTGCTTTCGTTAAGAAACTGGTTTCAACGGGTTTTTCTTCAATAGCCGG
TGCCTGTTTCTGCTCCGGTACGAACTACTTTTTGTTTTTATGTTGGTTAT
TTCGAATATTTTGATAATTCCTCTGCTCGAACGAGGCCTCTGTATTTGAT
GTCTATATATAACGATATGGGCATTATGCCATACCTGGAATATTGATTAC
TAGGGGTCAATGTAATTCCGTAGTTGGCACATTGAGAACGTGCTGCCCAA
AGAGGTAACTCTGTAATGGCTGTTGAAGAAACGTTTAATATGGAATGTAA
TAGGAACCATTCGCGCCTATGACAATTTTTGTATAGTATTGATGGGTGAT
TGTCGTGCTTGTCCTCAATGCCACTGCACCGAAAACAAATTGGTGGATTT
AAAGCGCACCTCTTGTACTTGCGTGATGTTCGTGTCGCACATTCTTGAAT
ACCTTTTATTTCGTACATATTATCTATTTCTCAAATATTGTGACAGTCTA
TACACTAACACAAAATGTGGAAAACGGGAGCTGTTACGTGATTACTAGTG
CTGATTTCTGATTCCACATGTCCCTCGGCAGACAAATCACACAGTAGAAA
AACACTCGAGCCACTACTGTACGCACTGGAAGTTGCGTTTAATCGAAATT
CTACTCGCAGACTTGACTAATCACAATTTCACCCTCGCGATACATCTATC
CCCGCCCCTCGTTGATGCCCTCGTCATATTTTGATGCTCATTATTCAGCG
TCCGTTGTGGACATTTCCGGCTCATCGTTCAGCGGCGATGACGGAGACTG
CTGAAGTTCCGTGGTCATGATCCAATATTAATCATGTAGTGCTTTCATTG
ATTGCCCTTCCCCCTCGCGCGCGCGCGTTCTGTGCCACCATTTTTGCACA
GTTTGATTTTTTGCTGATGAAACAGAGTCCGCCATTCACGAAAACGACAA
AC
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Coding sequence (CDS) from alignment at H-paniculata_contig7052:7317..11368-

>mRNA_H-paniculata_contig7052.15014.1 ID=mRNA_H-paniculata_contig7052.15014.1|Name=mRNA_H-paniculata_contig7052.15014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig7052:7317..11368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAGCTGTCGGAAGGGTGCACAGGCTAGGGCAGACCCGTGCCGTGAA
GGTCACCAAGCTCGTCCTCAAGGACTCACTCGAGACTCGCGCTCTGGCCT
TGCAGCGGAGACAGGACACACAGGAGGAGTCTGGCTCGTCCTCGGTGGCT
GGACGGAGTGTCGGAAACAAGCTGTCGGAAGGGTGCACAGGCTAGGGCAG
ACCCGTGCCGTGAAGGTCACCAAGCTCGTCCTCAAGGACTCACTCGAGAC
TCGCGCTCTGGCCTTGCAGCGGAGACAGGACACACAGGAGGAGTCTGGCT
CGTCCTCGGTGGCTGGACGGAGTGTCGGAGTGGCAGGAAGCCTGGCGGTG
GACAACGCCACGGGCCTCAAGATCGACGAAGTGGCAGGAAGCCTGGCGGT
GGACAACGCCACGGGCCTCAAGATCGACGACGTCCGTTGTGGACATTTCC
GGCTCATCGTTCAGCGGCGATGACGTCCGTTGTGGACATTTCCGGCTCAT
CGTTCAGCGGCGATGA
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