mRNA_H-paniculata_contig7023.14972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7023.14972.1
Unique NamemRNA_H-paniculata_contig7023.14972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 192 bits (487), Expect = 2.780e-52
Identity = 97/223 (43.50%), Postives = 140/223 (62.78%), Query Frame = 1
Query:   64 QTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
            + T  LEL+++D+ GP   E   GSR+ I F+DDY RM  VY L++KSEAL   K F+  V + +G  IK LR+DRG EF    F+ F  ENGI +E +A YTP++NGVAER  R++ EM +S +    + ++ WA +   AVY LN +PT+       YE W+G  S++ HL++FGC AYV   S  R K EDK+   +F+GY   S++YR++NP +K + +
Sbjct:  179 RATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLII 401          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A151RAI6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAI6_CAJCA)

HSP 1 Score: 183 bits (465), Expect = 1.450e-47
Identity = 94/232 (40.52%), Postives = 133/232 (57.33%), Query Frame = 1
Query:   79 LELLHTDIAGPA-DECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNW 771
            LEL+HTD+ GP        +R+ I F+DD+ +M  VY L+ KSE     K+F+  V K +G QIK  RSDRG E+T   F KF  + GI+Q+ + AYTPQ+NGV+ER  R+V EM +S +    + +  WA A   AVY LNR PT+      P E W G      HLRVFG   Y+    ++R K EDK    +FLGY+  S+ YR++N + K + + ++ ++      NW
Sbjct:  489 LELIHTDVCGPMRTPSHTNNRYFILFIDDFSKMTWVYFLKTKSEVFGIFKKFKALVEKQSGKQIKVFRSDRGKEYTSREFDKFCEDEGIEQQLTVAYTPQKNGVSERKNRTVMEMARSMLKEKGLPNTFWAEAVYTAVYLLNRCPTKAVQDKTPIEAWSGQKPSTKHLRVFGSICYIHVLDEKRHKLEDKTVRGIFLGYNSQSKGYRVYNLQTKKLTISRDIEVDGNATWNW 720          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A251S6V1_HELAN (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S6V1_HELAN)

HSP 1 Score: 180 bits (456), Expect = 6.740e-46
Identity = 92/237 (38.82%), Postives = 138/237 (58.23%), Query Frame = 1
Query:    1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNP 708
            IC  C   + + KP +K    + +E L+L+H+DI GP   +   G R+ I F+DD+ R   VY L+ KS+AL   + F+R      G +IK +R+DRG E+ G  F+ F  ENGI  + + +YTPQ+NGVAER  R++ E+++S +    + + +WA A   A Y LNR  T+      P E W G    +DHLR+FGC AYV    Q R K + K    +F+GY + S++Y+++NP
Sbjct:  468 ICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQVGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVKTERVIFVGYSEHSKAYKLYNP 704          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 179 bits (455), Expect = 1.520e-45
Identity = 92/237 (38.82%), Postives = 138/237 (58.23%), Query Frame = 1
Query:    1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNP 708
            IC  C   + + KP +K    + +E L+L+H+DI GP   +   G R+ I F+DD+ R   VY L+ KS+AL   + F+R      G +IK +R+DRG E+ G  F+ F  ENGI  + + +YTPQ+NGVAER  R++ E+++S +    + + +WA A   A Y LNR  T+      P E W G    +DHLR+FGC AYV    Q R K + K    +F+GY + S++Y+++NP
Sbjct:  390 ICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVKTERVIFVGYSEHSKAYKLYNP 626          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR)

HSP 1 Score: 179 bits (454), Expect = 1.800e-45
Identity = 89/234 (38.03%), Postives = 135/234 (57.69%), Query Frame = 1
Query:    1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRI 699
            +C +C + + + KP  K  +  T E LEL+H+D+ GP       G R+ + F+D Y R  + Y L +KSEA     +++  V K+TG QIK  RSD G E+T + F +++ +NGI  +++A YTPQ+NGVAER  R++ EM +S +    M    W  A   A Y  N  P +  NG  PYE W      L H+RVFGC A+V    ++R K++ KA   +FLGY+ + +++R+
Sbjct:  229 LCESCVKGKTTRKPFPKKSDSMTKEVLELVHSDVCGPMQTNTVSGRRYFVTFIDYYSRYTETYLLFNKSEAFEMFIEYKNKVEKSTGKQIKVFRSDNGTEYTCKRFEEYFVKNGIVHQYTAPYTPQQNGVAERKNRTLVEMARSMLFCAQMNKNFWGEAIVTATYIQNSCPNKALNGKTPYELWFEKRPSLKHMRVFGCEAFVHVPDEKRRKWDPKAIKCIFLGYESNVKAFRL 462          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 178 bits (451), Expect = 2.140e-45
Identity = 92/246 (37.40%), Postives = 143/246 (58.13%), Query Frame = 1
Query:    1 ICSTCE--RREASNKPVNKYWEEQTTERLELLHTDIAGPADECFE-GSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
            IC TC   ++   N P   +W  ++TE+LEL+HTD+ GP     + G R+ + F+DD  R   VY L+ K E+    K+F+  V   +G +IK LRSDRG EF  ++F +F A++GIK++ +AAYTPQ+NGVAER  R++  M +  +    +    W  A   AV+ LNR  TR  +   P E W G    +++ RVFGC  +V   SQ R K + ++   V LG   +S++YR+++P+ + + +
Sbjct:  477 ICETCNVGKQNRENIPKKSWW--RSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAERRNRTIMNMVRCSLTDKKVPKCFWPEAVNWAVHVLNRCITRALDDKVPEEMWSGKKPNVEYFRVFGCIGHVHIPSQFRSKLDARSHKCVLLGMSVESKAYRLYDPEQRKIVI 720          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 178 bits (452), Expect = 2.820e-45
Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query:   79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
            LEL+H+D+ GP +    G +R+ + F+DDY R   VY L++KSE     K F+    K +G  +K LRSD+G EF+   F  F  ENGIK +F+A YTPQ+NGVAER  R++ E+ +S +    M +R WA A   AVY LNRA +    G  P E W G    + HLR+FG  AY     + R K +DK+   + +GY + +++Y++ NP    + V ++ K       NW         +A +  PI   +G
Sbjct:  556 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 801          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU)

HSP 1 Score: 178 bits (452), Expect = 3.280e-45
Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query:   79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
            LEL+H+D+ GP +    G +R+ + F+DDY R   VY L++KSE     K F+    K +G  +K LRSD+G EF+   F  F  ENGIK +F+A YTPQ+NGVAER  R++ E+ +S +    M +R WA A   AVY LNRA +    G  P E W G    + HLR+FG  AY     + R K +DK+   + +GY + +++Y++ NP    + V ++ K       NW         +A +  PI   +G
Sbjct:  152 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 397          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU)

HSP 1 Score: 178 bits (452), Expect = 4.200e-45
Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query:   79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
            LEL+H+D+ GP +    G +R+ + F+DDY R   VY L++KSE     K F+    K +G  +K LRSD+G EF+   F  F  ENGIK +F+A YTPQ+NGVAER  R++ E+ +S +    M +R WA A   AVY LNRA +    G  P E W G    + HLR+FG  AY     + R K +DK+   + +GY + +++Y++ NP    + V ++ K       NW         +A +  PI   +G
Sbjct:  556 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 801          
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 178 bits (451), Expect = 5.720e-45
Identity = 95/246 (38.62%), Postives = 141/246 (57.32%), Query Frame = 1
Query:    1 ICSTC--ERREASNKPVNKYWEEQTTERLELLHTDIAGP-ADECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
            +C  C   ++   + P    W  +  E LEL++ D+ GP   +   G+R+ +  +DD+ R   VY ++ K +A    K+F+  V K +  +IK LR+DRG EFT   F  F  E+GI ++ +A YTPQ+NGV ER  R+V E T+S + T+ +    W  A R AVY LNR  T+  N   PYE+W+G    L HLRVFGC AYV  +  +  K  D++   V+LG +K S++YR++NPK   + V
Sbjct:  515 LCEGCLVSKQTRQSFPNEAQW--RAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYVK-KFNEITKLSDRSETMVYLGVEKGSKAYRLYNPKENKIVV 757          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H9ZU53_9ASPA2.780e-5243.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RAI6_CAJCA1.450e-4740.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A251S6V1_HELAN6.740e-4638.82Putative zinc finger, CCHC-type, Ribonuclease H-li... [more]
A0A251T2S6_HELAN1.520e-4538.82Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A3S3NIE3_9ACAR1.800e-4538.03Uncharacterized protein (Fragment) n=1 Tax=Dinothr... [more]
A0A5N6M7D6_9ASTR2.140e-4537.40Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5H2YBV8_PRUDU2.820e-4537.40Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1RY62_PRUDU3.280e-4537.40NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A4Y1RM74_PRUDU4.200e-4537.40Transposable element protein n=7 Tax=Prunus dulcis... [more]
UPI0016531AD15.720e-4538.62uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7023contigH-paniculata_contig7023:666..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score160.6
Seed ortholog evalue8.2e-37
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size1312
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7023.14972.1prot_H-paniculata_contig7023.14972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7023 666..1316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.668183-CDS-H-paniculata_contig7023:665..13161622930846.668183-CDS-H-paniculata_contig7023:665..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7023 666..1316 +
1691481479.048158-CDS-H-paniculata_contig7023:665..13161691481479.048158-CDS-H-paniculata_contig7023:665..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7023 666..1316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.6852562-UTR-H-paniculata_contig7023:1316..16531622930846.6852562-UTR-H-paniculata_contig7023:1316..1653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7023 1317..1653 +
1691481479.0692484-UTR-H-paniculata_contig7023:1316..16531691481479.0692484-UTR-H-paniculata_contig7023:1316..1653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7023 1317..1653 +
1622930846.7026203-UTR-H-paniculata_contig7023:1925..22491622930846.7026203-UTR-H-paniculata_contig7023:1925..2249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7023 1926..2249 +
1691481479.0861573-UTR-H-paniculata_contig7023:1925..22491691481479.0861573-UTR-H-paniculata_contig7023:1925..2249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7023 1926..2249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7023.14972.1

>prot_H-paniculata_contig7023.14972.1 ID=prot_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPADECFEGSRFAIF
FLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEF
TGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNM
GHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTA
YVMFQSQQRFKFEDKA*
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mRNA from alignment at H-paniculata_contig7023:666..2249+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7023.14972.1 ID=mRNA_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig7023:666..2249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGTTCAACGTGTGAGCGAAGGGAGGCATCGAACAAACCAGTAAATAA GTATTGGGAAGAGCAGACAACGGAGCGGCTGGAGCTACTGCATACTGACA TCGCAGGACCTGCAGACGAATGTTTCGAGGGAAGTCGGTTCGCCATTTTC TTCCTGGACGACTACAGGCGGATGCGTAAGGTCTACGCCCTGAGACATAA ATCAGAGGCGTTATGGACTCTGAAACAGTTCGAGCGGGACGTCGCGAAGG CAACCGGGCTACAAATAAAGCATCTTCGGTCAGATCGAGGAGCGGAGTTT ACAGGAGAAACGTTCCGAAAGTTTTATGCGGAAAATGGCATCAAGCAAGA ATTTTCTGCCGCCTACACGCCGCAGCGAAATGGTGTGGCGGAGCGCAGCT GGCGTAGCGTTTTCGAGATGACCCAAAGTAAGGTTATCACAGTCAACATG GGCCACAGGCATTGGGCGGGGGCGGCACGCGCGGCTGTGTACTGCTTAAA TCGCGCCCCGACGCGACCGCACAACGGAGGGGCACCGTATGAGAAATGGC AGGGCACGACATCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGCG TACGTGATGTTTCAGTCGCAGCAGAGATTCAAATTCGAGGACAAAGCATG AGTGTGAGTGTTTCTGGGGTACGACAAAGACAGCCAGAGTTATCGCATAC ATAACCCGAAAAACAAGAACGTCCAGGTATAGCAGGAACGTAAGATTTGA TGAAGAGGATTTCGTAACTGGCCATCGCGGACAGCTGGAGCACGACGGGA CGCGACACATGGAAAGCCTATTTTCAGCACGGTCGGTCACACCAGCGATC ACGCGATCTCGCGCCCGAGGCGAGCGAGGAGACCTAATCAACACAGAAAA ACCGACGTCAGCGTCGTCAGCCGCCAGCGCCAACCCTTACAGCGCCTTGA GCGATGACAATAGTCATGAAGACGATGATGACTTGGAAGTGAACGATGCT GAACCAGAAGCCGAAGACACATCATCGGCGGAGACATGCGCGCCCACATC TCGAGGGGAGACTAGGATAAAGTCAGGGGCGGAGGAGCGGCGACCGCGAG ATCGGTCACCAATACTGACACGGGCGAGAGTGAGGGAAAACCGCGAAGAG GATTCAGGTGCTGCCACGCGCGTGGCTAAAGTGGAAGACACCGCAGCCCT ACAGGTACGGTATCTGATGAAAAGCCGAAATCTGCGACAGAAGTATTGAA GAGCCCAGAGGCAGAAAAATGGCGCGCGGCAATGGAGGAGGAATGGAGGA CGTTGGTGAAAAATGGGAGGTGGGAGAGCGAGGACCCGGGGAGGTTACTG GTAGAGCGGAAGGCGATCTCTACCGAATGGAATTTCAAGCGCAAACTGAA GGAGGGCGGCAGCTTGCCACGCTACAAAGCGCGACTGGTGGCTCAAGGTT TTTCACAGGTGGAGGGTGAGGATTTCTTTGCAACCAGTGCCCCCGTAGCT CACATGTCGACATTGCGTACTGTTTTTAGCCTGGTCGCAGAACATGATTT CGAACTAGAAGGCATGGACGTAGATGCGGCGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig7023:666..2249+

>mRNA_H-paniculata_contig7023.14972.1 ID=mRNA_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig7023:666..2249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGTTCAACGTGTGAGCGAAGGGAGGCATCGAACAAACCAGTAAATAA
GTATTGGGAAGAGCAGACAACGGAGCGGCTGGAGCTACTGCATACTGACA
TCGCAGGACCTGCAGACGAATGTTTCGAGGGAAGTCGGTTCGCCATTTTC
TTCCTGGACGACTACAGGCGGATGCGTAAGGTCTACGCCCTGAGACATAA
ATCAGAGGCGTTATGGACTCTGAAACAGTTCGAGCGGGACGTCGCGAAGG
CAACCGGGCTACAAATAAAGCATCTTCGGTCAGATCGAGGAGCGGAGTTT
ACAGGAGAAACGTTCCGAAAGTTTTATGCGGAAAATGGCATCAAGCAAGA
ATTTTCTGCCGCCTACACGCCGCAGCGAAATGGTGTGGCGGAGCGCAGCT
GGCGTAGCGTTTTCGAGATGACCCAAAGTAAGGTTATCACAGTCAACATG
GGCCACAGGCATTGGGCGGGGGCGGCACGCGCGGCTGTGTACTGCTTAAA
TCGCGCCCCGACGCGACCGCACAACGGAGGGGCACCGTATGAGAAATGGC
AGGGCACGACATCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGCG
TACGTGATGTTTCAGTCGCAGCAGAGATTCAAATTCGAGGACAAAGCATG
AATCTGTTCAACGTGTGAGCGAAGGGAGGCATCGAACAAACCAGTAAATA
AGTATTGGGAAGAGCAGACAACGGAGCGGCTGGAGCTACTGCATACTGAC
ATCGCAGGACCTGCAGACGAATGTTTCGAGGGAAGTCGGTTCGCCATTTT
CTTCCTGGACGACTACAGGCGGATGCGTAAGGTCTACGCCCTGAGACATA
AATCAGAGGCGTTATGGACTCTGAAACAGTTCGAGCGGGACGTCGCGAAG
GCAACCGGGCTACAAATAAAGCATCTTCGGTCAGATCGAGGAGCGGAGTT
TACAGGAGAAACGTTCCGAAAGTTTTATGCGGAAAATGGCATCAAGCAAG
AATTTTCTGCCGCCTACACGCCGCAGCGAAATGGTGTGGCGGAGCGCAGC
TGGCGTAGCGTTTTCGAGATGACCCAAAGTAAGGTTATCACAGTCAACAT
GGGCCACAGGCATTGGGCGGGGGCGGCACGCGCGGCTGTGTACTGCTTAA
ATCGCGCCCCGACGCGACCGCACAACGGAGGGGCACCGTATGAGAAATGG
CAGGGCACGACATCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCACGGC
GTACGTGATGTTTCAGTCGCAGCAGAGATTCAAATTCGAGGACAAAGCAT
GA
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