mRNA_H-paniculata_contig7023.14972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA) HSP 1 Score: 192 bits (487), Expect = 2.780e-52 Identity = 97/223 (43.50%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 64 QTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
+ T LEL+++D+ GP E GSR+ I F+DDY RM VY L++KSEAL K F+ V + +G IK LR+DRG EF F+ F ENGI +E +A YTP++NGVAER R++ EM +S + + ++ WA + AVY LN +PT+ YE W+G S++ HL++FGC AYV S R K EDK+ +F+GY S++YR++NP +K + +
Sbjct: 179 RATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGIHRELTAPYTPEQNGVAERKNRTIVEMARSLLKAKGIPNQFWAESVATAVYLLNISPTKAILNRTLYEVWKGRKSRISHLKIFGCIAYVYVNSHDRHKLEDKSEKCIFIGYCPQSKAYRLYNPCSKKLII 401
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A151RAI6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAI6_CAJCA) HSP 1 Score: 183 bits (465), Expect = 1.450e-47 Identity = 94/232 (40.52%), Postives = 133/232 (57.33%), Query Frame = 1
Query: 79 LELLHTDIAGPA-DECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNW 771
LEL+HTD+ GP +R+ I F+DD+ +M VY L+ KSE K+F+ V K +G QIK RSDRG E+T F KF + GI+Q+ + AYTPQ+NGV+ER R+V EM +S + + + WA A AVY LNR PT+ P E W G HLRVFG Y+ ++R K EDK +FLGY+ S+ YR++N + K + + ++ ++ NW
Sbjct: 489 LELIHTDVCGPMRTPSHTNNRYFILFIDDFSKMTWVYFLKTKSEVFGIFKKFKALVEKQSGKQIKVFRSDRGKEYTSREFDKFCEDEGIEQQLTVAYTPQKNGVSERKNRTVMEMARSMLKEKGLPNTFWAEAVYTAVYLLNRCPTKAVQDKTPIEAWSGQKPSTKHLRVFGSICYIHVLDEKRHKLEDKTVRGIFLGYNSQSKGYRVYNLQTKKLTISRDIEVDGNATWNW 720
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A251S6V1_HELAN (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S6V1_HELAN) HSP 1 Score: 180 bits (456), Expect = 6.740e-46 Identity = 92/237 (38.82%), Postives = 138/237 (58.23%), Query Frame = 1
Query: 1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNP 708
IC C + + KP +K + +E L+L+H+DI GP + G R+ I F+DD+ R VY L+ KS+AL + F+R G +IK +R+DRG E+ G F+ F ENGI + + +YTPQ+NGVAER R++ E+++S + + + +WA A A Y LNR T+ P E W G +DHLR+FGC AYV Q R K + K +F+GY + S++Y+++NP
Sbjct: 468 ICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQVGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVKTERVIFVGYSEHSKAYKLYNP 704
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN) HSP 1 Score: 179 bits (455), Expect = 1.520e-45 Identity = 92/237 (38.82%), Postives = 138/237 (58.23%), Query Frame = 1
Query: 1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNP 708
IC C + + KP +K + +E L+L+H+DI GP + G R+ I F+DD+ R VY L+ KS+AL + F+R G +IK +R+DRG E+ G F+ F ENGI + + +YTPQ+NGVAER R++ E+++S + + + +WA A A Y LNR T+ P E W G +DHLR+FGC AYV Q R K + K +F+GY + S++Y+++NP
Sbjct: 390 ICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVKTERVIFVGYSEHSKAYKLYNP 626
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR) HSP 1 Score: 179 bits (454), Expect = 1.800e-45 Identity = 89/234 (38.03%), Postives = 135/234 (57.69%), Query Frame = 1
Query: 1 ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPAD-ECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRI 699
+C +C + + + KP K + T E LEL+H+D+ GP G R+ + F+D Y R + Y L +KSEA +++ V K+TG QIK RSD G E+T + F +++ +NGI +++A YTPQ+NGVAER R++ EM +S + M W A A Y N P + NG PYE W L H+RVFGC A+V ++R K++ KA +FLGY+ + +++R+
Sbjct: 229 LCESCVKGKTTRKPFPKKSDSMTKEVLELVHSDVCGPMQTNTVSGRRYFVTFIDYYSRYTETYLLFNKSEAFEMFIEYKNKVEKSTGKQIKVFRSDNGTEYTCKRFEEYFVKNGIVHQYTAPYTPQQNGVAERKNRTLVEMARSMLFCAQMNKNFWGEAIVTATYIQNSCPNKALNGKTPYELWFEKRPSLKHMRVFGCEAFVHVPDEKRRKWDPKAIKCIFLGYESNVKAFRL 462
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 178 bits (451), Expect = 2.140e-45 Identity = 92/246 (37.40%), Postives = 143/246 (58.13%), Query Frame = 1
Query: 1 ICSTCE--RREASNKPVNKYWEEQTTERLELLHTDIAGPADECFE-GSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
IC TC ++ N P +W ++TE+LEL+HTD+ GP + G R+ + F+DD R VY L+ K E+ K+F+ V +G +IK LRSDRG EF ++F +F A++GIK++ +AAYTPQ+NGVAER R++ M + + + W A AV+ LNR TR + P E W G +++ RVFGC +V SQ R K + ++ V LG +S++YR+++P+ + + +
Sbjct: 477 ICETCNVGKQNRENIPKKSWW--RSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGGEFNSQSFNEFCAQSGIKRQLTAAYTPQQNGVAERRNRTIMNMVRCSLTDKKVPKCFWPEAVNWAVHVLNRCITRALDDKVPEEMWSGKKPNVEYFRVFGCIGHVHIPSQFRSKLDARSHKCVLLGMSVESKAYRLYDPEQRKIVI 720
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU) HSP 1 Score: 178 bits (452), Expect = 2.820e-45 Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query: 79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
LEL+H+D+ GP + G +R+ + F+DDY R VY L++KSE K F+ K +G +K LRSD+G EF+ F F ENGIK +F+A YTPQ+NGVAER R++ E+ +S + M +R WA A AVY LNRA + G P E W G + HLR+FG AY + R K +DK+ + +GY + +++Y++ NP + V ++ K NW +A + PI +G
Sbjct: 556 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 801
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU) HSP 1 Score: 178 bits (452), Expect = 3.280e-45 Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query: 79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
LEL+H+D+ GP + G +R+ + F+DDY R VY L++KSE K F+ K +G +K LRSD+G EF+ F F ENGIK +F+A YTPQ+NGVAER R++ E+ +S + M +R WA A AVY LNRA + G P E W G + HLR+FG AY + R K +DK+ + +GY + +++Y++ NP + V ++ K NW +A + PI +G
Sbjct: 152 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 397
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU) HSP 1 Score: 178 bits (452), Expect = 4.200e-45 Identity = 95/254 (37.40%), Postives = 139/254 (54.72%), Query Frame = 1
Query: 79 LELLHTDIAGPADECFEG-SRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV*QERKI**RGFRNWPSRTAGARRDATHGKPIFSTVG 837
LEL+H+D+ GP + G +R+ + F+DDY R VY L++KSE K F+ K +G +K LRSD+G EF+ F F ENGIK +F+A YTPQ+NGVAER R++ E+ +S + M +R WA A AVY LNRA + G P E W G + HLR+FG AY + R K +DK+ + +GY + +++Y++ NP + V ++ K NW +A + PI +G
Sbjct: 556 LELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEEEAWNWS--------EAENQSPILLDIG 801
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1) HSP 1 Score: 178 bits (451), Expect = 5.720e-45 Identity = 95/246 (38.62%), Postives = 141/246 (57.32%), Query Frame = 1
Query: 1 ICSTC--ERREASNKPVNKYWEEQTTERLELLHTDIAGP-ADECFEGSRFAIFFLDDYRRMRKVYALRHKSEALWTLKQFERDVAKATGLQIKHLRSDRGAEFTGETFRKFYAENGIKQEFSAAYTPQRNGVAERSWRSVFEMTQSKVITVNMGHRHWAGAARAAVYCLNRAPTRPHNGGAPYEKWQGTTSKLDHLRVFGCTAYVMFQSQQRFKFEDKA*V*VFLGYDKDSQSYRIHNPKNKNVQV 729
+C C ++ + P W + E LEL++ D+ GP + G+R+ + +DD+ R VY ++ K +A K+F+ V K + +IK LR+DRG EFT F F E+GI ++ +A YTPQ+NGV ER R+V E T+S + T+ + W A R AVY LNR T+ N PYE+W+G L HLRVFGC AYV + + K D++ V+LG +K S++YR++NPK + V
Sbjct: 515 LCEGCLVSKQTRQSFPNEAQW--RAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYVK-KFNEITKLSDRSETMVYLGVEKGSKAYRLYNPKENKIVV 757 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7023.14972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7023.14972.1 >prot_H-paniculata_contig7023.14972.1 ID=prot_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp ICSTCERREASNKPVNKYWEEQTTERLELLHTDIAGPADECFEGSRFAIFback to top mRNA from alignment at H-paniculata_contig7023:666..2249+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7023.14972.1 ID=mRNA_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig7023:666..2249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7023:666..2249+ >mRNA_H-paniculata_contig7023.14972.1 ID=mRNA_H-paniculata_contig7023.14972.1|Name=mRNA_H-paniculata_contig7023.14972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig7023:666..2249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |