mRNA_H-paniculata_contig6954.14893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6954.14893.1
Unique NamemRNA_H-paniculata_contig6954.14893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6954.14893.1 vs. uniprot
Match: A0A6H5KYE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.260e-13
Identity = 71/201 (35.32%), Postives = 89/201 (44.28%), Query Frame = 1 
Query:  358 LFAAAALDLLMVLHARLPAVF---------------------GIVHDAGTMTPDKESSPAAATVTVTSIARDGSETIVGDDCPFTLGGVXXXXXXGWSCRSAPSGDGKASGSVGRGEARDG---------EGDGGLGAWMVILRALSLGARTGERDVGMHALQLLTKVIVFDDRVEDAPPEILQDVMLSIVLPLATHVWIR 870
            +FA AALDLLMVLHARLP+ F                              +P   S P A +    ++  + S                       SC  +      A+    RG   DG          G     AWM+ILRALSLGA + +  V  HALQLLTKV++ DD   +APP++LQD MLS+VLPLA H W R
Sbjct:    1 MFAGAALDLLMVLHARLPSSFKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVALSKPTATSAAFEAVQEERSTAAA-------------------SCGRSXXXXXAATARADRGARCDGGCRRPQGAAPGLVATDAWMMILRALSLGAGSEDLMVASHALQLLTKVML-DDLAAEAPPDVLQDAMLSVVLPLARHAWRR 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6954.14893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYE6_9PHAE1.260e-1335.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6954contigH-paniculata_contig6954:6903..9619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003260.1
Exons2
Model size1459
Cds size1458
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.5351925-CDS-H-paniculata_contig6954:6902..76701622930835.5351925-CDS-H-paniculata_contig6954:6902..7670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6954 6903..7670 +
1691481473.8695421-CDS-H-paniculata_contig6954:6902..76701691481473.8695421-CDS-H-paniculata_contig6954:6902..7670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6954 6903..7670 +
1622930835.5509393-CDS-H-paniculata_contig6954:8928..96181622930835.5509393-CDS-H-paniculata_contig6954:8928..9618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6954 8929..9618 +
1691481473.8801625-CDS-H-paniculata_contig6954:8928..96181691481473.8801625-CDS-H-paniculata_contig6954:8928..9618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6954 8929..9618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6954.14893.1prot_H-paniculata_contig6954.14893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6954 6903..9618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6954.14893.1

>prot_H-paniculata_contig6954.14893.1 ID=prot_H-paniculata_contig6954.14893.1|Name=mRNA_H-paniculata_contig6954.14893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=486bp
PRETEWGAVLSVLEACAGSGGAGQAETFEAVCLLVHNQDLKEVLPVDGVT
RCISAFFVAPVGALGAGECDWDGGGEADSDGEAEEGGHFSNSDDEKGIGK
ELLPSSSSSSLTFSSRPVALFAAAALDLLMVLHARLPAVFGIVHDAGTMT
PDKESSPAAATVTVTSIARDGSETIVGDDCPFTLGGVGGVGGIGWSCRSA
PSGDGKASGSVGRGEARDGEGDGGLGAWMVILRALSLGARTGERDVGMHA
LQLLTKVIVFDDRVEDAPPEILQDVMLSIVLPLATHVWIREGEEEAWGLQ
RQHQQRNQRQRQGHNNRGLLEPARGGPSAAVATTCDGHNPANSNALKCSR
TGLRGRTGSNGGSRPPTPGRDESTAGGYGREFSRSNRDGHVDGDGGGGGH
LVQEETLSRTSSRSVATLLPAVALPSPTSSPQEDGFEMVEAPPPAVAEAV
KRRPGKSSSNNHSGVRRVEWESSMAYAGDGSGGAGG
back to top

mRNA from alignment at H-paniculata_contig6954:6903..9619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6954.14893.1 ID=mRNA_H-paniculata_contig6954.14893.1|Name=mRNA_H-paniculata_contig6954.14893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2717bp|location=Sequence derived from alignment at H-paniculata_contig6954:6903..9619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGGGAGACGGAATGGGGCGCGGTGTTGTCGGTGTTGGAGGCGTGTGC
CGGAAGCGGGGGGGCGGGGCAAGCGGAGACTTTCGAGGCCGTTTGCTTGC
TCGTGCACAACCAGGACTTGAAGGAGGTCCTGCCCGTGGACGGAGTTACG
CGATGTATTTCGGCGTTTTTTGTAGCTCCCGTAGGCGCTCTAGGTGCCGG
CGAGTGCGACTGGGACGGTGGGGGCGAAGCCGACTCGGATGGTGAGGCCG
AGGAGGGTGGGCACTTCTCCAACAGTGATGACGAGAAAGGAATCGGAAAA
GAGTTGTTGCCATCGTCGTCGTCGTCGTCGTTGACGTTCTCGTCGAGACC
GGTTGCGTTGTTCGCCGCTGCTGCTTTGGATCTGCTGATGGTGCTGCACG
CCAGGCTACCCGCCGTTTTCGGGATTGTACACGATGCTGGTACGATGACT
CCGGACAAGGAGTCATCTCCCGCAGCAGCAACCGTAACTGTAACCTCGAT
CGCACGAGATGGTTCGGAGACCATCGTCGGTGATGACTGCCCTTTTACTC
TTGGTGGTGTCGGCGGTGTCGGCGGTATCGGCTGGAGTTGTCGTAGCGCG
CCCAGTGGGGACGGGAAAGCAAGCGGAAGCGTAGGTAGAGGGGAGGCGCG
GGACGGCGAAGGGGACGGTGGACTTGGCGCGTGGATGGTGATCCTACGTG
CGCTATCTCTGGGAGCAAGAACTGGAGAGAGGGATGTCGGGATGCACGCT
CTGCAGCTACTCACGAAGGTCTGTTCGCGCGTGCTGGCGGGGGGGGGGTA
CTTATCCACAAACTGACTAAACTAGGGCGGGAGGATGGAGGAAGTCGTTT
TGCTCAAATGTTTGTATATGCCATTTGACGAGAACGATCTATACATACTT
CCTCTGCGCCATAAGTAAAGTCGGTTGAGTTTGGCGGATCATATTTCCAG
ATCTGAAACGTTTTAGAGGCCGTGCTTGGAGTCGTTGGAAAGGTAATATC
TGATGGACTCATTTTCGATATTCGACAATTCACTCCAATTTATTTATCAG
CGTTAATAAGCACTCAAGTTTGGGCTAATTTTGACCATTTTTTCGTTGTT
GTCGGGACTCTTTAAGTCGCAAAATGTCAAGCCAGACAAAAACTAAGATA
AAATGTGTGACGTTTTGTGACCTAAAGAGCCCTGCTTTTTTTCGATTTTT
CGCGTTTTTCCATTGGAAAAGACAAAAAAAGAGACAACACATGGCTTGTT
TTCGGCCGATTTCTTTTTTTAGCGTCGCGCGTGCACCCCATAAAATTTAG
TAATATCTGTGAAATGCTAGGGATCAGCCCCCAAAATGCGTAGAATTTTA
ACTAAAAAAAACACTGTGCAGGCTAGTAAAGACGTCCGTGGAACTGAAGA
CGCAAGACTTTGTCGTGCCCAGCGCTTCTCTGAACGCATGTACTGTTGCA
ACGCCCCCACCACAACGAGCAAAAATCAGCCAAAGTCTTCCCGGACCCTC
AGTCGTTATTGTTGAACTGATAAACAAGTGCACATAATCTAGATTTGAGA
TGGGGTGCATAAGCTCAACATGGGTACAACAAAGTTATGATCCCGACTTC
ATACCGAGGCAAACATGAAAGAAAGCCCCCATCCCGGCTGATTCGAAATT
CCTCATGAGTATATACGTGTAGTTATAATTCGTTATCCATGATTATGAGC
GTCACAACCTCAGCGTGGAATTAAACGCACATTTTGTGTTGCAAAACAAC
TATATCTGAAAGAGTGTTGAGATCTTACTCGATGATATGCAACTATGCCT
CAAAATGATTTTACTATGTCTTGTGCGTGGCTGTTTGTTCTATGTAATCA
GGTCTGCGTTGTACTCTGTGACACGAGCGACTGATTCCATAGTACTCCCT
GGTACATGTGGTGTAATCGCCCGAGTGCTGTCTCCAGCCCGAGCTGTGCA
ACCTATCGAGGTACTTGGTCATCGAAGCCCCCTCTCCCTCCTTCCCCTCG
CCCTCTCGTATCTTCTCTGTGTGCAGGTAATAGTATTCGATGACCGTGTG
GAAGATGCTCCGCCCGAAATTCTTCAAGATGTGATGCTATCCATTGTGCT
GCCCCTGGCGACCCATGTGTGGATTCGGGAGGGTGAGGAGGAGGCTTGGG
GACTACAGCGGCAGCACCAGCAGAGAAACCAGCGGCAGCGACAAGGACAT
AACAACAGGGGACTGCTCGAGCCAGCGAGAGGTGGTCCGTCGGCGGCGGT
GGCAACAACATGCGATGGTCATAATCCTGCGAATAGTAATGCCTTGAAGT
GTTCGAGGACTGGTTTGCGAGGAAGAACTGGTTCTAATGGCGGCTCTCGA
CCCCCAACTCCGGGCAGGGACGAGAGCACGGCGGGGGGCTACGGTAGGGA
ATTCAGCAGAAGTAATCGTGATGGTCATGTTGATGGTGATGGTGGCGGTG
GTGGGCACCTCGTACAAGAAGAAACGTTGAGCCGGACTAGTAGTAGGTCT
GTCGCCACGCTGCTTCCCGCGGTAGCGTTACCGTCCCCAACGTCCTCGCC
ACAAGAAGACGGCTTTGAGATGGTCGAGGCGCCACCGCCGGCGGTGGCGG
AAGCGGTGAAACGTCGACCGGGAAAGTCGTCCTCGAATAATCACAGCGGG
GTTCGCAGAGTGGAGTGGGAATCGTCTATGGCATATGCGGGAGACGGGAG
CGGAGGGGCAGGAGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6954:6903..9619+

>mRNA_H-paniculata_contig6954.14893.1 ID=mRNA_H-paniculata_contig6954.14893.1|Name=mRNA_H-paniculata_contig6954.14893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2916bp|location=Sequence derived from alignment at H-paniculata_contig6954:6903..9619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGGGAGACGGAATGGGGCGCGGTGTTGTCGGTGTTGGAGGCGTGTGC
CGGAAGCGGGGGGGCGGGGCAAGCGGAGACTTTCGAGGCCGTTTGCTTGC
TCGTGCACAACCAGGACTTGAAGGAGGTCCTGCCCGTGGACGGAGTTACG
CGATGTATTTCGGCGTTTTTTGTAGCTCCCGTAGGCGCTCTAGGTGCCGG
CGAGTGCGACTGGGACGGTGGGGGCGAAGCCGACTCGGATGGTGAGGCCG
AGGAGGGTGGGCACTTCTCCAACAGTGATGACGAGAAAGGAATCGGAAAA
GAGTTGTTGCCATCGTCGTCGTCGTCGTCGTTGACGTTCTCGTCGAGACC
GGTTGCGTTGTTCGCCGCTGCTGCTTTGGATCTGCTGATGGTGCTGCACG
CCAGGCTACCCGCCGTTTTCGGGATTGTACACGATGCTGGTACGATGACT
CCGGACAAGGAGTCATCTCCCGCAGCAGCAACCGTAACTGTAACCTCGAT
CGCACGAGATGGTTCGGAGACCATCGTCGGTGATGACTGCCCTTTTACTC
TTGGTGGTGTCGGCGGTGTCGGCGGTATCGGCTGGAGTTGTCGTAGCGCG
CCCAGTGGGGACGGGAAAGCAAGCGGAAGCGTAGGTAGAGGGGAGGCGCG
GGACGGCGAAGGGGACGGTGGACTTGGCGCGTGGATGGTGATCCTACGTG
CGCTATCTCTGGGAGCAAGAACTGGAGAGAGGGATGTCGGGATGCACGCT
CTGCAGCTACTCACGAAGCCCAGGGAGACGGAATGGGGCGCGGTGTTGTC
GGTGTTGGAGGCGTGTGCCGGAAGCGGGGGGGCGGGGCAAGCGGAGACTT
TCGAGGCCGTTTGCTTGCTCGTGCACAACCAGGACTTGAAGGAGGTCCTG
CCCGTGGACGGAGTTACGCGATGTATTTCGGCGTTTTTTGTAGCTCCCGT
AGGCGCTCTAGGTGCCGGCGAGTGCGACTGGGACGGTGGGGGCGAAGCCG
ACTCGGATGGTGAGGCCGAGGAGGGTGGGCACTTCTCCAACAGTGATGAC
GAGAAAGGAATCGGAAAAGAGTTGTTGCCATCGTCGTCGTCGTCGTCGTT
GACGTTCTCGTCGAGACCGGTTGCGTTGTTCGCCGCTGCTGCTTTGGATC
TGCTGATGGTGCTGCACGCCAGGCTACCCGCCGTTTTCGGGATTGTACAC
GATGCTGGTACGATGACTCCGGACAAGGAGTCATCTCCCGCAGCAGCAAC
CGTAACTGTAACCTCGATCGCACGAGATGGTTCGGAGACCATCGTCGGTG
ATGACTGCCCTTTTACTCTTGGTGGTGTCGGCGGTGTCGGCGGTATCGGC
TGGAGTTGTCGTAGCGCGCCCAGTGGGGACGGGAAAGCAAGCGGAAGCGT
AGGTAGAGGGGAGGCGCGGGACGGCGAAGGGGACGGTGGACTTGGCGCGT
GGATGGTGATCCTACGTGCGCTATCTCTGGGAGCAAGAACTGGAGAGAGG
GATGTCGGGATGCACGCTCTGCAGCTACTCACGAAGGTAATAGTATTCGA
TGACCGTGTGGAAGATGCTCCGCCCGAAATTCTTCAAGATGTGATGCTAT
CCATTGTGCTGCCCCTGGCGACCCATGTGTGGATTCGGGAGGGTGAGGAG
GAGGCTTGGGGACTACAGCGGCAGCACCAGCAGAGAAACCAGCGGCAGCG
ACAAGGACATAACAACAGGGGACTGCTCGAGCCAGCGAGAGGTGGTCCGT
CGGCGGCGGTGGCAACAACATGCGATGGTCATAATCCTGCGAATAGTAAT
GCCTTGAAGTGTTCGAGGACTGGTTTGCGAGGAAGAACTGGTTCTAATGG
CGGCTCTCGACCCCCAACTCCGGGCAGGGACGAGAGCACGGCGGGGGGCT
ACGGTAGGGAATTCAGCAGAAGTAATCGTGATGGTCATGTTGATGGTGAT
GGTGGCGGTGGTGGGCACCTCGTACAAGAAGAAACGTTGAGCCGGACTAG
TAGTAGGTCTGTCGCCACGCTGCTTCCCGCGGTAGCGTTACCGTCCCCAA
CGTCCTCGCCACAAGAAGACGGCTTTGAGATGGTCGAGGCGCCACCGCCG
GCGGTGGCGGAAGCGGTGAAACGTCGACCGGGAAAGTCGTCCTCGAATAA
TCACAGCGGGGTTCGCAGAGTGGAGTGGGAATCGTCTATGGCATATGCGG
GAGACGGGAGCGGAGGGGCAGGAGGGGTAATAGTATTCGATGACCGTGTG
GAAGATGCTCCGCCCGAAATTCTTCAAGATGTGATGCTATCCATTGTGCT
GCCCCTGGCGACCCATGTGTGGATTCGGGAGGGTGAGGAGGAGGCTTGGG
GACTACAGCGGCAGCACCAGCAGAGAAACCAGCGGCAGCGACAAGGACAT
AACAACAGGGGACTGCTCGAGCCAGCGAGAGGTGGTCCGTCGGCGGCGGT
GGCAACAACATGCGATGGTCATAATCCTGCGAATAGTAATGCCTTGAAGT
GTTCGAGGACTGGTTTGCGAGGAAGAACTGGTTCTAATGGCGGCTCTCGA
CCCCCAACTCCGGGCAGGGACGAGAGCACGGCGGGGGGCTACGGTAGGGA
ATTCAGCAGAAGTAATCGTGATGGTCATGTTGATGGTGATGGTGGCGGTG
GTGGGCACCTCGTACAAGAAGAAACGTTGAGCCGGACTAGTAGTAGGTCT
GTCGCCACGCTGCTTCCCGCGGTAGCGTTACCGTCCCCAACGTCCTCGCC
ACAAGAAGACGGCTTTGAGATGGTCGAGGCGCCACCGCCGGCGGTGGCGG
AAGCGGTGAAACGTCGACCGGGAAAGTCGTCCTCGAATAATCACAGCGGG
GTTCGCAGAGTGGAGTGGGAATCGTCTATGGCATATGCGGGAGACGGGAG
CGGAGGGGCAGGAGGG
back to top