mRNA_H-paniculata_contig694.14881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig694.14881.1
Unique NamemRNA_H-paniculata_contig694.14881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.850e-63
Identity = 106/162 (65.43%), Postives = 124/162 (76.54%), Query Frame = 1
Query:    1 MGMFSMLVVITLSFLLSIANCFVAPSVSSLSARQTRLTGAGGMNMLFGGGAKKASPGG-IAVKVQQKTGFKETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            M  F  + +I L+ +L I+N FV    SSL+ R+   +G   M MLFG           I VKVQQKTGFKETE+ L+GKTNLRKAL+DNKID+YPLQGKIYNCGGGGSCGTCAVNV  GA N SPKGPGEKKLLDK+K+PAS+RLSCCTMV+GPVT++TKP
Sbjct:    1 MKSFLFVALIVLAAVLQISNGFVVAPSSSLNVRRQSHSG---MQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.280e-40
Identity = 80/150 (53.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   34 LSFLLSIANCFVAPSVSSLSARQTRLTGAGGMNMLFGGGAKKASPGGIAVKVQQKTGFKETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            LS +L+     VAP++     R T         MLFG  A  A   GI V VQQK  FK+T + +    NLRKAL+   I++YPLQGKIYNCGGGGSCGTC VNVV G  N SPKGP EKKLL    KP ++RLSCCT V G +T+ TKP
Sbjct:   14 LSVMLAAEAFLVAPALQRPVQRDTLTP-----RMLFGKKAAPAKSKGIEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGN--KPETYRLSCCTKVNGNITVATKP 155          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.150e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 1
Query:   22 VVITLSFLLSIANCFVAPSVSSLSARQTRLTGAGGMNMLFGGGAKKASP--GGIAVKVQQKTGFKETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            VVI L   +S A+ F+     SL+  + + + +  + MLFG   KKA+P  G  ++ V+Q+ GF + ++   G  NLRK L+  KID+YPLQGK+ NCGGGG CGTCAV V+ GA NLSPK P EKK+L K  KP ++RLSCCT V+G  T++TKP
Sbjct:    5 VVIFLVCAISGASAFLG---QSLALNRVQASSSTSLQMLFGS-KKKAAPVKGKYSITVKQR-GFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSK--KPENYRLSCCTRVSGACTVRTKP 153          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.880e-31
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   97 RQTRLTGAGGMNMLFG----GGAKKASPGGIAVKVQQKTGFK--ETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            +Q+R  G   M  +FG    GG KK       V VQQK  +K  E E+      NLRK L+ NKID+YPLQGKIYNCGGGG CGTCA+ ++ GA NL+PK P E K L   KK    RL+CCT  +G VT+KTKP
Sbjct:   30 KQSRRVGVMTMLGMFGKKSAGGNKKT----FTVTVQQKF-YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALG-GKKGDDIRLACCTRASGDVTVKTKP 158          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1)

HSP 1 Score: 106 bits (265), Expect = 5.950e-26
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  238 TNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            +NLRK LL+NKIDVY L+GK+ NCGGGG CGTC V++  G  N +P+G  E ++ +  + P S+RLSCCT + GP+T++TKP
Sbjct:  109 SNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: UPI00055BF685 ((2Fe-2S)-binding protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055BF685)

HSP 1 Score: 98.6 bits (244), Expect = 8.070e-24
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  214 TEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            TE++ +  +NLR+  L N +D+Y L+GK+ NCGG G C TC V++V G  NLSP+   E+K L K  KP S+RLSC T+V GP+T++TKP
Sbjct:   17 TEVVAANGSNLREKALQNNVDIYKLKGKLTNCGGVGQCSTCIVDIVEGMENLSPRTDFEQKRLGK--KPDSYRLSCQTVVKGPITVRTKP 104          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: A0A0V7ZXI1_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Mastigocoleus testarum BC008 TaxID=371196 RepID=A0A0V7ZXI1_9CYAN)

HSP 1 Score: 94.4 bits (233), Expect = 3.110e-22
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  211 ETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            + E++ +   NLR   ++N +D+Y + GK+ NCGG G CGTCAV +V G  NLSP+   E KLL K  KP ++RL+C T+V GPV + TKP
Sbjct:   10 DKEVVAATGANLRLKAMENSVDIYKMWGKMMNCGGYGQCGTCAVEIVSGMENLSPRTDAENKLLKK--KPDNYRLACQTLVNGPVEVITKP 98          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: A0A835YVE2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.840e-22
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  151 AKKASPGGIAVKVQQKTGFKETEIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            +K A+  G++V V Q +   + +I      NLRK LLDNK+D+Y    K+  CGGGG+CGTC V V  G  N S KG GE+K+L      A  RL+CCT VTGPV++  KP
Sbjct:   11 SKAAASKGVSVTVSQGSKVLK-QIDSDAPVNLRKLLLDNKVDLYKPLDKLKQCGGGGTCGTCRVRVTEGMENCSKKGLGEEKMLKAVG--ADIRLACCTRVTGPVSVTVKP 118          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: A0A3M1PIL1_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PIL1_9CYAN)

HSP 1 Score: 95.9 bits (237), Expect = 4.660e-22
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  217 EIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            E++ +   NLR   L+N ID+Y   GK+ NCGG G CGTC V VV GA NLSP+ P E++ L K  +PA++RL+C TMV GPV++ TKP
Sbjct:   12 EVVAADGANLRFKALENGIDLYTFMGKMMNCGGYGQCGTCIVEVVEGAENLSPRTPVEQQKLKK--RPANYRLACQTMVNGPVSVVTKP 98          
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Match: UPI0016855296 ((2Fe-2S)-binding protein n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016855296)

HSP 1 Score: 92.8 bits (229), Expect = 1.320e-21
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  217 EIILSGKTNLRKALLDNKIDVYPLQGKIYNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTMVTGPVTIKTKP 483
            E+I++   NLR+  L N ID+Y   GK+ NCGG G CGTC V +V GA NLS +   E++ L K  KP ++RL+C T+V GP+ +KTKP
Sbjct:   12 EVIVAAGANLREKALQNDIDIYTFMGKMTNCGGYGQCGTCIVEIVEGAENLSERTEFEQRKLKK--KPETYRLACQTLVNGPIAVKTKP 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig694.14881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBE9_ECTSI3.850e-6365.43Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A836CNT2_9STRA8.280e-4053.33Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S2UXM9_9STRA4.150e-3749.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TM71_9STRA1.880e-3151.85Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 Re... [more]
M1VFK1_CYAM15.950e-2654.882Fe-2S ferredoxin-type domain-containing protein n... [more]
UPI00055BF6858.070e-2451.11(2Fe-2S)-binding protein n=1 Tax=Myxosarcina sp. G... [more]
A0A0V7ZXI1_9CYAN3.110e-2248.35Iron ABC transporter substrate-binding protein n=1... [more]
A0A835YVE2_9STRA3.840e-2246.852Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A3M1PIL1_9CYAN4.660e-2252.81(2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bac... [more]
UPI00168552961.320e-2149.44(2Fe-2S)-binding protein n=1 Tax=Oscillatoria sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig694contigH-paniculata_contig694:18912..20019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog45157.CME070CT
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2RXME@2759,COG0633@1
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-27_004210.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size486
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.209929-CDS-H-paniculata_contig694:18911..191061622930834.209929-CDS-H-paniculata_contig694:18911..19106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig694 18912..19106 -
1691481473.2818937-CDS-H-paniculata_contig694:18911..191061691481473.2818937-CDS-H-paniculata_contig694:18911..19106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig694 18912..19106 -
1622930834.2226908-CDS-H-paniculata_contig694:19728..200191622930834.2226908-CDS-H-paniculata_contig694:19728..20019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig694 19729..20019 -
1691481473.2919598-CDS-H-paniculata_contig694:19728..200191691481473.2919598-CDS-H-paniculata_contig694:19728..20019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig694 19729..20019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig694.14881.1prot_H-paniculata_contig694.14881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig694 18912..20019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig694.14881.1

>prot_H-paniculata_contig694.14881.1 ID=prot_H-paniculata_contig694.14881.1|Name=mRNA_H-paniculata_contig694.14881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MGMFSMLVVITLSFLLSIANCFVAPSVSSLSARQTRLTGAGGMNMLFGGG
AKKASPGGIAVKVQQKTGFKETEIILSGKTNLRKALLDNKIDVYPLQGKI
YNCGGGGSCGTCAVNVVVGAGNLSPKGPGEKKLLDKDKKPASFRLSCCTM
VTGPVTIKTKP*
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mRNA from alignment at H-paniculata_contig694:18912..20019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig694.14881.1 ID=mRNA_H-paniculata_contig694.14881.1|Name=mRNA_H-paniculata_contig694.14881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-paniculata_contig694:18912..20019- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATGTTTTCAATGCTTGTCGTAATAACACTCTCGTTCTTACTGAG CATTGCTAATTGCTTCGTGGCTCCTTCTGTTTCGTCGCTCAGTGCGCGAC AAACTCGATTGACGGGCGCTGGTGGCATGAACATGCTATTCGGTGGGGGG GCAAAAAAAGCCTCTCCTGGAGGCATCGCAGTCAAGGTGCAGCAAAAGAC AGGCTTCAAGGAAACTGAGATCATACTTAGTGGGAAGACGAACTTGCGGA AGGCCTTGCTGGATAACAAGATCGATGTGTACCCGTTGCAGGTGTGTACA CATATTTTCTCTCGTGCGCCTCTAGTTTTGGTCTACAAAAGTTGTGCTGT CTCTGTAGTGTAGATGTGCGTGCGTGTCTTTCGCTGCGTACGTGTTCATC TCGAGAAGACATATTTGATTGTTGTGATGACGATTCACTCTCTGTGCATG ATGGATTCATGTTTGTTTAAGAAGTCGAAAAAGGACGAAATATTCACTCC ATGACGACCCAACCTGGGTGATACGTGTGTGAAACGTGCGGTGTGCATTC GTGAGACAAATAAGTGTACTAGAGGATAGTGATTGATCATATGTGACCTT TTGGAAAGGCATGAAATGTTTTGAATGAACGGTATGATAAGTTAATAACA GAGACGACGGTACGCGACACTCGGACAAAACACATGGATACAGGAAACCG TCCCCAAGTGAAAGTCATCATCATAAATCACTCTCATCACCTCATCAAGT CAGGCGCCTCGGACTCTTTTATCTGAGTCCGTAGAAGAGAAATTACATGC AAAACTCGTTGATCTCGAGTCGTACGGGCTGGCCTGCTGTACCGGCCGTA CTATTGCGACACGAATGATGGTTAACTCGCCCACATATGTGATTTTTCTC TTTTCACCGTCAGGGTAAAATTTACAACTGCGGCGGAGGCGGCTCGTGCG GTACTTGTGCAGTGAATGTTGTCGTTGGAGCTGGAAACCTAAGCCCTAAA GGACCTGGGGAAAAGAAGTTGCTGGACAAGGACAAGAAGCCAGCCTCGTT CAGGCTGTCATGTTGCACAATGGTCACCGGGCCCGTGACAATCAAGACGA AGCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig694:18912..20019-

>mRNA_H-paniculata_contig694.14881.1 ID=mRNA_H-paniculata_contig694.14881.1|Name=mRNA_H-paniculata_contig694.14881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig694:18912..20019- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATGTTTTCAATGCTTGTCGTAATAACACTCTCGTTCTTACTGAG
CATTGCTAATTGCTTCGTGGCTCCTTCTGTTTCGTCGCTCAGTGCGCGAC
AAACTCGATTGACGGGCGCTGGTGGCATGAACATGCTATTCGGTGGGGGG
GCAAAAAAAGCCTCTCCTGGAGGCATCGCAGTCAAGGTGCAGCAAAAGAC
AGGCTTCAAGGAAACTGAGATCATACTTAGTGGGAAGACGAACTTGCGGA
AGGCCTTGCTGGATAACAAGATCGATGTGTACCCGTTGCAGATGGGGATG
TTTTCAATGCTTGTCGTAATAACACTCTCGTTCTTACTGAGCATTGCTAA
TTGCTTCGTGGCTCCTTCTGTTTCGTCGCTCAGTGCGCGACAAACTCGAT
TGACGGGCGCTGGTGGCATGAACATGCTATTCGGTGGGGGGGCAAAAAAA
GCCTCTCCTGGAGGCATCGCAGTCAAGGTGCAGCAAAAGACAGGCTTCAA
GGAAACTGAGATCATACTTAGTGGGAAGACGAACTTGCGGAAGGCCTTGC
TGGATAACAAGATCGATGTGTACCCGTTGCAGGGTAAAATTTACAACTGC
GGCGGAGGCGGCTCGTGCGGTACTTGTGCAGTGAATGTTGTCGTTGGAGC
TGGAAACCTAAGCCCTAAAGGACCTGGGGAAAAGAAGTTGCTGGACAAGG
ACAAGAAGCCAGCCTCGTTCAGGCTGTCATGTTGCACAATGGTCACCGGG
CCCGTGACAATCAAGACGAAGCCATAGGGTAAAATTTACAACTGCGGCGG
AGGCGGCTCGTGCGGTACTTGTGCAGTGAATGTTGTCGTTGGAGCTGGAA
ACCTAAGCCCTAAAGGACCTGGGGAAAAGAAGTTGCTGGACAAGGACAAG
AAGCCAGCCTCGTTCAGGCTGTCATGTTGCACAATGGTCACCGGGCCCGT
GACAATCAAGACGAAGCCATAG
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