mRNA_H-paniculata_contig6923.14859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6923.14859.1
Unique NamemRNA_H-paniculata_contig6923.14859.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6923.14859.1 vs. uniprot
Match: D7G1F4_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F4_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.020e-30
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:   40 GGGEEKKGVEWVEPAREPTELEAKQLKDLLKRANNVPLRLDPRERLILGLLEGALHHVPYTDEVDRIHSGNKMSHVLRNLKIFFMSLWGMYKAAGVTPPTRVAPPGNHPANRVQNNH 390
            GGG    G E   PARE T+ E + L DL +R+ N+PLRLDPRER ILG+LEG+LHHV YTD+VDRI  GN++ +VL+NL  FF S+WGMYKA+GV+ PT   P G   A R+Q  H
Sbjct:  423 GGGVSAGGDEAAGPAREATKSEKESLVDLYRRSTNIPLRLDPREREILGVLEGSLHHVQYTDQVDRIMRGNRLPYVLKNLGHFFTSVWGMYKASGVSLPTYSPPSGA--AKRLQPRH 537
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BLAST of mRNA_H-paniculata_contig6923.14859.1 vs. uniprot
Match: A0A6H5KSQ1_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.400e-28
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:   61 GVEWVEPAREPTELEAKQLKDLLKRANNVPLRLDPRERLILGLLEGALHHVPYTDEVDRIHSGNKMSHVLRNLKIFFMSLWGMYKAAGVTPPTRVAPPG 357
            G E V PARE T+ E + L DL +R+ N+PLRLDPRER ILG+LEG+LHHV YTDEVDRI  G ++ +VL+NL  FF S+WGMYKA+GV+ PT   P G
Sbjct:  632 GDEAVGPAREATKSEKESLVDLYRRSTNIPLRLDPREREILGVLEGSLHHVQYTDEVDRIMRGGRLPYVLKNLGHFFTSVWGMYKASGVSLPTYSPPSG 730
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6923.14859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1F4_ECTSI7.020e-3057.26B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KSQ1_9PHAE1.400e-2861.62B box-type domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6923contigH-paniculata_contig6923:7339..11909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size458
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6923.14859.1prot_H-paniculata_contig6923.14859.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6923 7339..11908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.5918722-CDS-H-paniculata_contig6923:7338..75111622930831.5918722-CDS-H-paniculata_contig6923:7338..7511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 7339..7511 +
1691481472.143405-CDS-H-paniculata_contig6923:7338..75111691481472.143405-CDS-H-paniculata_contig6923:7338..7511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 7339..7511 +
1622930831.6081579-CDS-H-paniculata_contig6923:10476..105961622930831.6081579-CDS-H-paniculata_contig6923:10476..10596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 10477..10596 +
1691481472.1548147-CDS-H-paniculata_contig6923:10476..105961691481472.1548147-CDS-H-paniculata_contig6923:10476..10596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 10477..10596 +
1622930831.6286795-CDS-H-paniculata_contig6923:11745..119081622930831.6286795-CDS-H-paniculata_contig6923:11745..11908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 11746..11908 +
1691481472.1678076-CDS-H-paniculata_contig6923:11745..119081691481472.1678076-CDS-H-paniculata_contig6923:11745..11908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6923 11746..11908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6923.14859.1

>prot_H-paniculata_contig6923.14859.1 ID=prot_H-paniculata_contig6923.14859.1|Name=mRNA_H-paniculata_contig6923.14859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
GAARGGSVAAAYKGGGEEKKGVEWVEPAREPTELEAKQLKDLLKRANNVP
LRLDPRERLILGLLEGALHHVPYTDEVDRIHSGNKMSHVLRNLKIFFMSL
WGMYKAAGVTPPTRVAPPGNHPANRVQNNHHRFGPVPYRALANNNGLAMQ
NG
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mRNA from alignment at H-paniculata_contig6923:7339..11909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6923.14859.1 ID=mRNA_H-paniculata_contig6923.14859.1|Name=mRNA_H-paniculata_contig6923.14859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4571bp|location=Sequence derived from alignment at H-paniculata_contig6923:7339..11909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGCACGGGGGGGGTCAGTGGCGGCAGCGTACAAGGGAGGTGGCGA
GGAGAAAAAAGGGGTGGAATGGGTTGAGCCAGCGAGAGAGCCTACAGAAT
TGGAGGCGAAGCAGCTGAAGGACCTGCTCAAGCGTGCGAACAACGTACCC
CTCCGTTTGGACCCGCGAGAGAGGTGGGTCATATGATGTGATTGATGATG
TTATCTGTGCGAAGAGTACCCTATGAAAGGAGTCACGTACGACAAACGTT
TGCCAAGGACAAACCATCTTTTTCATAGTCGTGGTTCATTATTTACGGCA
ATAGGGGAGCACCAGTTGTTCTTCAGCGCAACACCAACGGATTCTAGATG
TGTTCCGCTGTACCCGGAACTGTCCAAAATGGGCAGGGTTCACCCTTTCC
TGTCGATTACCCTATATGATAAAGTGCTGACCCCCCTGTTTATCCGTTTC
ACTCTTATTTTGAGCAGTCGTATCGTCGACGATCCGGGGTATATCGTATG
AACGTGCTCATGCTGAACCTCCATGCGAATATTTGTTTGTTTTCGTCTCG
AATATGAAATATTCGTTCATGTCCGGGGGCAGAGTGGGGGCAGGGGGGGC
TGCAATAATTGTATCACTTTGTTCTTGCGGGGCAGCAGTTTCGAAGCCAA
GTGCGGTACGTACTGGTACGAAAGACTCGTGGATCTCACGGTTCAGACAC
CTGGGCCCCCGGAACACTTTGAAGCCTGAAAAACAAGGCGGGCGGATTGA
GGGGGGATGATTTTGGCAGTATCTCCGTTTTGAGACATGAATGCTCACTA
GAAGCCCGCTAAATCCCTATGTTATCATCTCTATTGTAGCGAGTGCATAG
TCGTGACCGCACTGCTATCATTGCGAGAGGCCTGTGTCGTGTCGTGGTGT
CGCTATAGAAACGTATACCTAAAATATGTACTGTAATTTGGTCCAAAACT
AAGAGGCGGACTCGGGTGAAGTCATGTTTTACTTGCTGTAGCTGTTAGAC
CATAGACCACGCGTTCTCGGGAGGATAAAGTTTCTTCCTTTCTATCAGAT
CAATTTCTGATAGCCGAGCGGTCCTTCCTGCACTGCTAAATATGGCTAAA
AAGGTTTTTGTCTACCCTGTGTACCTCAACCCGTGTCTTTTCAGGCCGAT
TAATATTTCCTAGAACCCCTATCGTCTCCTTTTCGCAATCTCAGGATTCA
AACGCCTCTCTATCGCATCCTTCATTTTCCTCGATTCACTCATATCTATA
TCTATATCTGTATCTGTATATGTATAGAGTCATATAATAGTCTTCGTGGT
TATGCAGCTAAAAGCCTCAGTTGCGTACGCTTATCAGCATAACATGACCA
AAGTAAGGGAGAGTAAGTCGTCCATATCCTCGTTTTGCACATGCACGCTC
ACAGCCTCACTCCTGCCGCTGAGAGACCCCACCTGTCAACAGATATTCAT
TTGTGTATTTAAGTGATACAGTGATTCAGCAAGGATTTCATCTTTTTTCA
CTTGTGTACCTCTGCAGACAAGAAGACACTGGCAACCAACATTCTGGGTT
GTGTATAAGTGATAAACGATTCGACCTGTATCTCACATACATGTACTAGG
TTTGCCACGGGGGATTTCTTTTGCTGCCCGCGGGTCTGTGCGATCGGGCT
CAAGTATTGAACATCAATAATATATTTTGCACTGTCCCAAGGTATGTTAC
CTGGTACCAATATGCGTTATTACTCCACCCACAATCCACGTGGAAGAAGT
GCCAAGCACCAAGGGGCCTTACCAACGGAACCCATCGAATCAGGGCCCTC
TAAAATTGGAAAGTTAAGGCTCGAGAGGGGTACTAGGGGGGGGGGGGGGG
GGGGGGGGGTACTCCCTTTCAAGGATGGTTATCCCCCCTATCGGCGCTTT
GTCTACTTGATTACAGTAACGCACGATTTTGACTTGACTATAGAATTGGA
AGGCCATATTCGTCGCTTTGCGGCGCAACTCCCCAGCTGATGTGGTCTGC
AGCTGGAGCACAGCACCTGACTGTACTGTACTGTGGGCAACTGTGGCTTG
ATTGTGGGCCTCAGTAACGCCTATAGCAACGGGCCAGCAGAGTGACGATT
CAGGCAGCGGAGCTGTTCCTGAGGTACTAGCAGAGCCAGAAGTACTGGAA
GGGCTGCCGGTCAGCTAGAGAAAGCGTGTTGGCGGCAAGTTCATTCGCGT
CTGAGAAGGCGAAACTTGACTATAGCCACATTACACACTACGAGGCTCAT
GAAGTTCTTTCAACGCCGTACCCCCCCCCTCCTCGTGACAATGGGCGGGC
ACACATCACCCTGGTTTTGAAGTGCTCACGTGTAGCTGACCCTTTCTGTG
TGAAGCGGTAGCTCAAATCGTTCAATTGGTGGAGAAATAGCAATAGTTCA
ATTTTCCCGTGTTTTACTGGATTCTGGAGGCGTCTCGGGGGGGGGGGGGG
GTGCCCTGGTTCGGTGGGTTCCGTTGGTAGGCCCCTTGCAAGCACTCTCT
GCAGGAGGTTAGTCAGAAAACAACCGAATACACGATGTAGCGAATGCGTC
ATAGAGCACAACCAGTAATCTTCTCTGACCTATGCCAACGTTCCTGCGCT
ACACTACGTTATGGGCCGTCTCGGTCGTAGATATTGTGTCTACCTGCATT
GTACTGTATTGCTCTGCATATAATGATCATGATTGAATATAGTGTGCCTG
AACCCAATGTATTGTATGTGCTACATACCTCGTCAAGTATAGTAAAATGC
TGATCGTATGTACCACGCCGTGCGCTCGTTAACATTTGCGAGCTTTCGTT
AGCCCACCGATGTATGATGAAGACATGAACTATTGATTCAACGATGTATG
AAGACATGAACGTTTGATTCAACAGTGTATGATCAAGCCTTCATACAATC
AAATTACAATTTACGTTCTACCATACAACGCAACACGATAAAACAGAGCA
GATGAAACGTGTGAGATGCATCATAAGATCTGAAGGACCTTGAGGCTGAA
AACGGCGGTACTATGTAAACTTCACCACTGCACTTAAAGAGCTAGACGTT
CAACTTTTTTTCGTTTTTTTTTTTTGGCGTATTATCTAAGGAAACAAATC
TCACTTGATCTCTTTTGCCCATACCGTGGTGTGTTTAGGTTAATCCTTGG
CCTACTGGAAGGAGCGTTGCACCACGTACCCTACACAGATGAGGTCGACA
GGATCCACTCCGGGAACAAAATGAGCCATGTCCTCAGGAACCTCAAGATA
TTTTTCATGTGAGTTTTCTGTCAGTTTTTAGGTTTGATATAGTAAAATAA
AGCACACCCCCCCTTCTTGCGTGTATTGTGATGTGTGTGAAGGGTAATTC
ATGGCCTTCTGGAAGGTTGGTGCAACTGTTGTAGACTGTAGGGTTTCCAG
TGGTGGATGCGTTGATCGCGCCCCGGGGTGGGCTATCCAAATACGAGATG
AACGAAAGAGCGTCCCGTGGGCGCTCAGAATGCCCCGAGGCGAAGGGGGG
GGGGAGGGGGAGGGGGGTACTCATGTAGTTAGTTGAACTATACATATTAG
ATCTCCGTTGTATCCATGTTGAGATTATGTACGTGAAATCAATCTGCACT
TGTGTACATTTTATCAGCAAAATTTGAACAATTGGGGTACTCATGTTTTG
CATGCTGTAGTTGTTGGGCCATCGACCATGGGTCCTCGAGAGAACGGAGC
TTTATTCCTATGGGAGTGATTTTCGATGGCCAATCGCTTCTTCCTACCTT
GCCAAATGCGTCTCAAAGATGTTTCCCCTAGTATCGTGTGTACCTTAACC
CTTACCTGTTGAGGCTAATTTATATCTCCTACAACCGCCACGGTAAGCCT
TATTTCCGCAATCCCAGAAGGCTGTTGCGGGGGGTGGTCAACGTTCGGGA
CTTCGGGGAGAATGTCTAGGAGCGATTGACTTTTTCGCAAAAAAGTATTG
CTATACCCAGGCAAATAGATCGTACCGGTTCAGATTTTTTTACTGCATTA
TTGTATCTTGTATTTGCGCCCCGAGACCCCCCCCCAAAAGACGTGACGTT
TTCAAACAACCCGCTTTGGCTGGTCATCACTGCCCCCCCCCATGCAAAAC
ACTGTCGAGAAAATGAATCTCCAACGCGCTGTCAGAGGAATTGACGGTAG
TAAATGCAGGTAGACTTTCGGTCCAGCGTTTCGCTACCCAGAGACATTCC
CCTAATGCACTGGCCCGAGATGTGGTTATTCAGTATATGTTACATGATAC
CCACAAATCCACAGAAGTGATCCCCAACAGGATCCCCAAAATCGTTGGAA
CAAGACCAGATAAGTCGAGTAGCAAATACATCCCATAGTTCTAGAAATGG
CCTCCTCTGACCCCTATGCTCCTGTACTACCTGCGCTACAATGCAACACC
CTAACAGGAGCTTGTGGGGAATGTACAAGGCCGCGGGCGTGACGCCTCCC
ACGCGCGTAGCCCCTCCTGGCAACCACCCAGCCAACCGCGTCCAAAATAA
CCATCACAGGTTTGGTCCCGTCCCCTATCGCGCGCTCGCCAATAACAACG
GGTTGGCGATGCAAAATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6923:7339..11909+

>mRNA_H-paniculata_contig6923.14859.1 ID=mRNA_H-paniculata_contig6923.14859.1|Name=mRNA_H-paniculata_contig6923.14859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig6923:7339..11909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGCACGGGGGGGGTCAGTGGCGGCAGCGTACAAGGGAGGTGGCGA
GGAGAAAAAAGGGGTGGAATGGGTTGAGCCAGCGAGAGAGCCTACAGAAT
TGGAGGCGAAGCAGCTGAAGGACCTGCTCAAGCGTGCGAACAACGTACCC
CTCCGTTTGGACCCGCGAGAGAGGGGGCGGCACGGGGGGGGTCAGTGGCG
GCAGCGTACAAGGGAGGTGGCGAGGAGAAAAAAGGGGTGGAATGGGTTGA
GCCAGCGAGAGAGCCTACAGAATTGGAGGCGAAGCAGCTGAAGGACCTGC
TCAAGCGTGCGAACAACGTACCCCTCCGTTTGGACCCGCGAGAGAGGTTA
ATCCTTGGCCTACTGGAAGGAGCGTTGCACCACGTACCCTACACAGATGA
GGTCGACAGGATCCACTCCGGGAACAAAATGAGCCATGTCCTCAGGAACC
TCAAGATATTTTTCATGTTAATCCTTGGCCTACTGGAAGGAGCGTTGCAC
CACGTACCCTACACAGATGAGGTCGACAGGATCCACTCCGGGAACAAAAT
GAGCCATGTCCTCAGGAACCTCAAGATATTTTTCATGAGCTTGTGGGGAA
TGTACAAGGCCGCGGGCGTGACGCCTCCCACGCGCGTAGCCCCTCCTGGC
AACCACCCAGCCAACCGCGTCCAAAATAACCATCACAGGTTTGGTCCCGT
CCCCTATCGCGCGCTCGCCAATAACAACGGGTTGGCGATGCAAAATGGGG
AGCTTGTGGGGAATGTACAAGGCCGCGGGCGTGACGCCTCCCACGCGCGT
AGCCCCTCCTGGCAACCACCCAGCCAACCGCGTCCAAAATAACCATCACA
GGTTTGGTCCCGTCCCCTATCGCGCGCTCGCCAATAACAACGGGTTGGCG
ATGCAAAATGGG
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