mRNA_H-paniculata_contig69209.14854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig69209.14854.1
Unique NamemRNA_H-paniculata_contig69209.14854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 2.040e-55
Identity = 92/169 (54.44%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGAS-----DLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            LWIP    ALQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  +E +V  FV+QCLHC+D ++G +VPRPLGE +HGT  GE++HFD+L++GAS     D L E E    G  Y+LV++DD+S +VW EP   CTA + A  +L WC + G P V+VSDTA HFKN ++
Sbjct: 1283 LWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEE----GFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMM 1447          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.890e-53
Identity = 85/165 (51.52%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRG-GCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            LWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  ++ +V  FV+QCLHC+D +SG  VPRP GE +HG   GE+LHFD+LH+G S  L    +    G  YLLV++DD+S + W EP   CTA++ A  +L WC   G P V+VSDTA HFKN ++
Sbjct:  405 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVM 569          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.850e-52
Identity = 85/165 (51.52%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRG-GCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            LWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  ++ +V  FV+QCLHC+D +SG  VPRP GE +HG   GE+LHFD+LH+G S  L    +    G  YLLV++DD+S + W EP   CTA++ A  +L WC   G P V+VSDTA HFKN ++
Sbjct: 1181 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVM 1345          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.750e-34
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 1
Query:  130 IEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRG-GCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            ++ +V  FV+QCLHC+D +SG  VPRP GE +HG   GE+LHFD+LH+G S  L    +    G  YLLV++DD+S + W EP   CTA++ A  +L WC   G P V+VSDTA HFKN ++
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVM 122          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6H5J9M0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M0_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.860e-32
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  130 IEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLL-KEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTA 468
            +E +V  FV+ CL+C+D ++G +VP+PLGE  HGT  GE++ FD+L++GAS LL K+      G  Y+LV++DD+S +VW EP   CTA++ +  +L WC   G P V+VSDTA
Sbjct:    1 MEEHVTDFVKHCLNCMDSKAGEKVPQPLGETAHGTRPGEVVLFDYLYVGASGLLGKDSLDEEDGFKYILVMMDDMSNWVWLEPTGACTARLTSQHLLTWCKTLGVPEVWVSDTA 114          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A329S5W2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5W2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.110e-29
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            +WIP    +LQ R+ +  H+  AGHRG++ T+  L     W+ + A+   FVR CLHC+    G  VPRPLGE +H     E++H+D+L++GAS    +         Y+LV+  D S +VW     + TA      ++ W  VFG    +VSD   HFKN ++
Sbjct:  374 VWIPPAAASLQLRICIVGHVSVAGHRGLETTLAALQQRFWWNDLPADATYFVRHCLHCMSVVGGPPVPRPLGEAMHADRPNELIHWDYLYMGASSTNDK---------YILVIKGDASKFVWFFAVPDATADTTYNCLMEWFAVFGVCLTWVSDQGTHFKNEVI 528          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.470e-29
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            +WIP    +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H     E++H+D+L++GAS              Y+LV+ DD S YVW     + TA      ++ W   FG    + SD   HFKN ++
Sbjct: 1279 IWIPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGAS---------TSDDMYILVIKDDASKYVWFFAVPDATADTTYTCLVEWFAAFGVCLSWDSDQGTHFKNEVI 1433          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6A4ZJ35_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ35_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.420e-29
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            +WIP +   +Q R+ V AH   AGHR ++AT   +A    W  ++A+V  FVR CLHC+    G  VPRP GE LH T+  E++HFD++    ++         GG  ++LV+ DD+SG+V    +   TA   A+ ++ W  +FG    +VSD   HFKN L+
Sbjct:  866 IWIPDDALDMQVRICVVAHAGVAGHRRVEATTASVADMFDWPTLKADVKNFVRACLHCMVV-DGESVPRPWGEALHATKPNELIHFDWVSFPEAE---------GGLKHVLVIKDDMSGFVRLHASASATAVETASALMEWFGLFGVVKTWVSDCGSHFKNELI 1019          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.860e-28
Identity = 58/162 (35.80%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 IPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            IP    +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H     E++H+D+L +GAS              Y+LV+ DD S YVW     + TA  +   ++ W   FG    +VSD   HFKN ++
Sbjct:  612 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS---------TSDDKYILVIKDDASKYVWFFVVPDATADTSYTCLMYWFAAFGVSLSWVSDQGTHFKNEVI 764          
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.160e-28
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 1
Query:    7 IPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAGFVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEHEVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGVFVSDTARHFKNRLV 492
            IP    +LQ R+ +  H   AGHRG+D T+  ++    W  +  +V  FVR+CLHC+    G  +PRPLGE +H     E++H+D+L +GAS              Y+LV+ DD S YVW     + TA      ++ W   FG    +VSD   HFKN ++
Sbjct:  334 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS---------TSDDKYILVIKDDASKYVWFFVVPDATADTTYTCLMYWFAAFGVSLSWVSDQGTHFKNEVI 486          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69209.14854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE2.040e-5554.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE2.890e-5351.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE1.850e-5251.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE4.750e-3449.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9M0_9PHAE2.860e-3247.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A329S5W2_9STRA1.110e-2935.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4WY00_9STRA3.470e-2935.37Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A4ZJ35_9STRA8.420e-2937.80Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]
A0A6A3N928_9STRA2.860e-2835.80Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A4FJL8_9STRA3.160e-2835.80Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69209contigH-paniculata_contig69209:3..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue8.4e-26
Seed eggNOG ortholog4792.ETI57041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.9740443-CDS-H-paniculata_contig69209:2..4941622930830.9740443-CDS-H-paniculata_contig69209:2..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69209 3..494 -
1691481471.8468301-CDS-H-paniculata_contig69209:2..4941691481471.8468301-CDS-H-paniculata_contig69209:2..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69209 3..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69209.14854.1prot_H-paniculata_contig69209.14854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig69209 3..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig69209.14854.1

>prot_H-paniculata_contig69209.14854.1 ID=prot_H-paniculata_contig69209.14854.1|Name=mRNA_H-paniculata_contig69209.14854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
LWIPRNEHALQARLMVCAHMQEAGHRGMDATVNRLAAYCVWDGIEANVAG
FVRQCLHCLDFRSGSRVPRPLGELLHGTEVGEILHFDFLHLGASDLLKEH
EVIRGGCPYLLVLLDDVSGYVWPEPALECTAKVAAATMLRWCMVFGAPGV
FVSDTARHFKNRLV
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mRNA from alignment at H-paniculata_contig69209:3..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig69209.14854.1 ID=mRNA_H-paniculata_contig69209.14854.1|Name=mRNA_H-paniculata_contig69209.14854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig69209:3..494- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGCGGCTTATGGTATG CGCCCACATGCAGGAGGCGGGCCACCGGGGCATGGACGCTACGGTCAACC GCCTTGCTGCATACTGTGTGTGGGACGGGATAGAGGCGAACGTGGCGGGG TTTGTCCGGCAGTGTTTGCACTGTTTGGATTTCAGGTCAGGGTCGCGGGT GCCCCGCCCGTTAGGCGAGCTGTTGCACGGGACGGAGGTGGGGGAGATAC TTCACTTCGACTTCCTACATCTGGGCGCGAGCGACCTGCTCAAGGAGCAC GAGGTGATCCGCGGGGGCTGCCCGTACCTTCTCGTGTTGCTGGATGACGT CAGCGGTTACGTGTGGCCAGAGCCGGCGCTGGAATGTACGGCGAAAGTGG CTGCCGCCACCATGTTGAGGTGGTGCATGGTGTTTGGAGCGCCTGGAGTG TTCGTCAGCGACACCGCTCGTCACTTCAAGAACCGATTGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig69209:3..494-

>mRNA_H-paniculata_contig69209.14854.1 ID=mRNA_H-paniculata_contig69209.14854.1|Name=mRNA_H-paniculata_contig69209.14854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig69209:3..494- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGCGGCTTATGGTATG
CGCCCACATGCAGGAGGCGGGCCACCGGGGCATGGACGCTACGGTCAACC
GCCTTGCTGCATACTGTGTGTGGGACGGGATAGAGGCGAACGTGGCGGGG
TTTGTCCGGCAGTGTTTGCACTGTTTGGATTTCAGGTCAGGGTCGCGGGT
GCCCCGCCCGTTAGGCGAGCTGTTGCACGGGACGGAGGTGGGGGAGATAC
TTCACTTCGACTTCCTACATCTGGGCGCGAGCGACCTGCTCAAGGAGCAC
GAGGTGATCCGCGGGGGCTGCCCGTACCTTCTCGTGTTGCTGGATGACGT
CAGCGGTTACGTGTGGCCAGAGCCGGCGCTGGAATGTACGGCGAAAGTGG
CTGCCGCCACCATGTTGAGGTGGTGCATGGTGTTTGGAGCGCCTGGAGTG
TTCGTCAGCGACACCGCTCGTCACTTCAAGAACCGATTGGTCCTGTGGAT
TCCCCGCAACGAGCACGCGCTGCAGGCGCGGCTTATGGTATGCGCCCACA
TGCAGGAGGCGGGCCACCGGGGCATGGACGCTACGGTCAACCGCCTTGCT
GCATACTGTGTGTGGGACGGGATAGAGGCGAACGTGGCGGGGTTTGTCCG
GCAGTGTTTGCACTGTTTGGATTTCAGGTCAGGGTCGCGGGTGCCCCGCC
CGTTAGGCGAGCTGTTGCACGGGACGGAGGTGGGGGAGATACTTCACTTC
GACTTCCTACATCTGGGCGCGAGCGACCTGCTCAAGGAGCACGAGGTGAT
CCGCGGGGGCTGCCCGTACCTTCTCGTGTTGCTGGATGACGTCAGCGGTT
ACGTGTGGCCAGAGCCGGCGCTGGAATGTACGGCGAAAGTGGCTGCCGCC
ACCATGTTGAGGTGGTGCATGGTGTTTGGAGCGCCTGGAGTGTTCGTCAG
CGACACCGCTCGTCACTTCAAGAACCGATTGGTC
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