mRNA_H-paniculata_contig68869.14810.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68869.14810.1
Unique NamemRNA_H-paniculata_contig68869.14810.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.080e-53
Identity = 89/162 (54.94%), Postives = 107/162 (66.05%), Query Frame = 1 
Query:    4 ACDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            ACDVCAVG S Q    K A +    PFQL+ TDLMGP +P ALGG  Y+ K  D+H KW E +L+K +  T+ A Q F QSV+ P   R+E +RADKGGEY    F  YC   G+ L +A  NTP +IG +ER+GRTLA MVRC+LADSGLP FLW EL  T
Sbjct:  300 ACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMT 461
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.260e-45
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C  C +GKS Q    K A + V  PFQL+F D +GP TP ALGG KY +K  D+HTKW E  L+K +  ++ A + F +  VIP   RI  LRADKG E+ +  ++ YCL  G+ L++A  NTP QIG +ER GRT+ ++VRCMLADS LP  LW EL+ T
Sbjct:  608 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQT 768
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.300e-45
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C  C +GKS Q    K A + V  PFQL+F D +GP TP ALGG KY +K  D+HTKW E  L+K +  ++ A + F +  VIP   RI  LRADKG E+ +  ++ YCL  G+ L++A  NTP QIG +ER GRT+ ++VRCMLADS LP  LW EL+ T
Sbjct:  730 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQT 890
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.300e-45
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C  C +GKS Q    K A + V  PFQL+F D +GP TP ALGG KY +K  D+HTKW E  L+K +  ++ A + F +  VIP   RI  LRADKG E+ +  ++ YCL  G+ L++A  NTP QIG +ER GRT+ ++VRCMLADS LP  LW EL+ T
Sbjct:  608 CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQT 768
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BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 7.150e-44
Identity = 73/161 (45.34%), Postives = 106/161 (65.84%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C+ C + KS Q    KTA H    P Q ++TDL+GPI+P A GG  YVSK +DE+++    YL++S+ + ++    F+Q +VIP+GFR+ERLR+D GGEY  + ++D+C   G+  E+    TP Q G+SER GRTL ++VRC++    LP+FLW EL  T
Sbjct:   21 CETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCT 181
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 7.410e-42
Identity = 78/161 (48.45%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C  CA+GKS Q    K A + VK PFQL+F D +GP TP ALGG KY +K  D+ TKW E  L+K +  ++ +   F +  V+P+G  I  LR D G E+    F+ Y    G+ LE+A  NTP QIG +ER GRT+ ++VRC+LADS LP FLW ELI T
Sbjct:  561 CGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWELIQT 721
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.770e-41
Identity = 73/128 (57.03%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:  106 MGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            MGPI+  ALGG +YV+K+ DE TKW ET+L+K++ D + A Q F QS+V+P+ FR++ LR DKG E   + F++YCLQ G  LEYA  NTP Q+G +ER GRTLA+MVRC+L DSGLP+FLW +L+ T
Sbjct:    1 MGPISLPALGGFRYVNKLVDEKTKWKETFLMKTKRDAIKALQLFNQSLVVPTRFRLDCLRGDKGTECTCREFREYCLQIGAKLEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQT 128
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.160e-41
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C VC +GKS Q    K   + V  PFQ +  D +GP TP ALGG KY +K  D+ TKW E  L+K Q  ++ +   F +  V+P+G RI  LR D G E+    F+ YC   G+ LE+A  NTP Q+G +ER GRT+ ++VRC+LADS LP FLW ELI T
Sbjct:  321 CCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQT 481
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.420e-40
Identity = 74/166 (44.58%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQR----KTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGM-SERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C+ C + KS  L +R    KTA H    P Q ++TDL+GPI+P A GG  YVSK +DE+++    YL++S+ + ++    F+Q +VIP+GFR+ERLR D GGEY  + ++D+C   G+  E+    TP Q G+ SER GRTL ++VRC++    LP+FLW EL  T
Sbjct:    4 CETCKIQKS-TLPKRNTLTKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQQNGIISERAGRTLMNIVRCLMHGGKLPEFLWGELCCT 168
[Close]
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.690e-40
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:    7 CDVCAVGKSHQLAQRKTADHKVKYPFQLIFTDLMGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*QIGMSERVGRTLASMVRCMLADSGLPKFLWRELIFT 489
            C+ C + KS Q    KTA H    P Q ++TDL+GPI+P A GG  YVSK +DE+++    YL++++ + +   + F+  +VIP+GFR+ERLR+D GGEY  + +  +C   G+  E+    TP Q G+SER GRTL ++VRC+L    LP++LW EL  T
Sbjct:  503 CETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCT 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68869.14810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.080e-5354.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE1.260e-4549.69Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.300e-4549.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.300e-4549.69Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KCZ9_9PHAE7.150e-4445.34Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JBV6_9PHAE7.410e-4248.45Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5L6R7_9PHAE1.770e-4157.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KXM1_9PHAE2.160e-4147.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFB1_9PHAE1.420e-4044.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE5.690e-4043.48Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68869contigH-paniculata_contig68869:242..730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score70.1
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68869.14810.1prot_H-paniculata_contig68869.14810.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68869 347..622 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.550767-UTR-H-paniculata_contig68869:241..3461622930824.550767-UTR-H-paniculata_contig68869:241..346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68869 242..346 +
1691481469.0338557-UTR-H-paniculata_contig68869:241..3461691481469.0338557-UTR-H-paniculata_contig68869:241..346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68869 242..346 +
1622930824.5730288-UTR-H-paniculata_contig68869:622..7301622930824.5730288-UTR-H-paniculata_contig68869:622..730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68869 623..730 +
1691481469.0571704-UTR-H-paniculata_contig68869:622..7301691481469.0571704-UTR-H-paniculata_contig68869:622..730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68869 623..730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.5624027-CDS-H-paniculata_contig68869:346..6221622930824.5624027-CDS-H-paniculata_contig68869:346..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68869 347..622 +
1691481469.0464327-CDS-H-paniculata_contig68869:346..6221691481469.0464327-CDS-H-paniculata_contig68869:346..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68869 347..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68869.14810.1

>prot_H-paniculata_contig68869.14810.1 ID=prot_H-paniculata_contig68869.14810.1|Name=mRNA_H-paniculata_contig68869.14810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MGPITPEALGGLKYVSKISDEHTKWTETYLLKSQGDTLSAFQSFVQSVVI
PSGFRIERLRADKGGEYIDKGFKDYCLQTGMPLEYAHANTP*
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mRNA from alignment at H-paniculata_contig68869:242..730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68869.14810.1 ID=mRNA_H-paniculata_contig68869.14810.1|Name=mRNA_H-paniculata_contig68869.14810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig68869:242..730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTTGCGACGTCTGCGCCGTGGGGAAGAGCCACCAGCTGGCCCAGCG
CAAGACGGCCGATCACAAGGTCAAGTACCCCTTCCAGCTTATCTTCACAG
ACCTGATGGGGCCCATCACGCCGGAAGCACTCGGGGGCCTCAAGTACGTT
AGCAAGATCTCCGACGAACACACCAAATGGACCGAAACCTACCTGTTGAA
GTCCCAGGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCAATCGGTGG
TGATTCCTAGCGGCTTCCGCATCGAGCGCCTGAGGGCTGATAAAGGGGGC
GAATATATCGACAAGGGTTTCAAAGACTACTGCCTTCAGACTGGGATGCC
ACTCGAGTACGCCCACGCCAACACGCCATAACAAATCGGCATGTCCGAGC
GCGTCGGAAGAACTCTTGCGTCTATGGTGAGGTGCATGCTTGCGGACAGC
GGACTGCCAAAGTTTCTGTGGAGAGAATTGATATTTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig68869:242..730+

>mRNA_H-paniculata_contig68869.14810.1 ID=mRNA_H-paniculata_contig68869.14810.1|Name=mRNA_H-paniculata_contig68869.14810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig68869:242..730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCCATCACGCCGGAAGCACTCGGGGGCCTCAAGTACGTTAGCAA
GATCTCCGACGAACACACCAAATGGACCGAAACCTACCTGTTGAAGTCCC
AGGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCAATCGGTGGTGATT
CCTAGCGGCTTCCGCATCGAGCGCCTGAGGGCTGATAAAGGGGGCGAATA
TATCGACAAGGGTTTCAAAGACTACTGCCTTCAGACTGGGATGCCACTCG
AGTACGCCCACGCCAACACGCCATAAATGGGGCCCATCACGCCGGAAGCA
CTCGGGGGCCTCAAGTACGTTAGCAAGATCTCCGACGAACACACCAAATG
GACCGAAACCTACCTGTTGAAGTCCCAGGGCGACACTCTCAGCGCATTCC
AGTCGTTCGTGCAATCGGTGGTGATTCCTAGCGGCTTCCGCATCGAGCGC
CTGAGGGCTGATAAAGGGGGCGAATATATCGACAAGGGTTTCAAAGACTA
CTGCCTTCAGACTGGGATGCCACTCGAGTACGCCCACGCCAACACGCCAT
AA
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