mRNA_H-paniculata_contig68371.14761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68371.14761.1
Unique NamemRNA_H-paniculata_contig68371.14761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: D1J792_ECTSI (ATP synthase subunit a, chloroplastic n=40 Tax=Phaeophyceae TaxID=2870 RepID=D1J792_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.180e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH
Sbjct:  160 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 247
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A8F0F721_9PHAE (ATP synthase CF0 A subunit subunit IV n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F721_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.960e-47
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGN+LADELTVSVL LLVPLIVPLPVM+LGVFASSVQALIFSTLAGAYIAEAVEGH
Sbjct:  161 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTLLVPLIVPLPVMVLGVFASSVQALIFSTLAGAYIAEAVEGH 248
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A8E6D5Q8_9PHAE (ATP synthase subunit a, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5Q8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.780e-47
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLI+PLPVMLLGVFASSVQALIFSTLAGAYIAEAVE H
Sbjct:  161 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIIPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEEH 248
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A141BSD6_9PHAE (ATP synthase subunit a, chloroplastic n=14 Tax=Fucales TaxID=3009 RepID=A0A141BSD6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.020e-46
Identity = 80/88 (90.91%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTP+LLPINILEDFTKPLSLSFRLFGN+LADELTVSVL +LVPL +PLPVMLLGVFASSVQALIFSTLAGAYIAE++EGH
Sbjct:  161 GYFKRYIEPTPILLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTVLVPLFIPLPVMLLGVFASSVQALIFSTLAGAYIAESIEGH 248
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A6P0NHI3_9CYAN (F0F1 ATP synthase subunit A (Fragment) n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NHI3_9CYAN)

HSP 1 Score: 149 bits (375), Expect = 3.280e-44
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTPLLLPIN+LEDFTKPLSLSFRLFGNILADELTVSVL LLVPL+ PLPVM LGVFASSVQALIFSTLA AYI E++EG 
Sbjct:   45 GYFKRYIEPTPLLLPINVLEDFTKPLSLSFRLFGNILADELTVSVLVLLVPLVAPLPVMALGVFASSVQALIFSTLAAAYIGESIEGE 132
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: UPI001FCDC1CA (ATP synthase CFO A subunit subunit IV n=2 Tax=Rhodophyta TaxID=2763 RepID=UPI001FCDC1CA)

HSP 1 Score: 150 bits (379), Expect = 9.190e-44
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYF RYIEPTP+LLPINILEDFTKPLSLSFRLFGNILADEL VSVLALLVPLIVPLPVM+LGVFASS+QALIFSTL+ AYI EA+EGH
Sbjct:  151 GYFARYIEPTPILLPINILEDFTKPLSLSFRLFGNILADELVVSVLALLVPLIVPLPVMVLGVFASSIQALIFSTLSAAYIGEAMEGH 238
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: B2XT85_HETAK (ATP synthase subunit a, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT85_HETAK)

HSP 1 Score: 150 bits (378), Expect = 1.410e-43
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRY+EPTP+LLPINILEDFTKPLSLSFRLFGNILADELTVSVL +LVPL +PLP+M+LGVFASS+QALIFSTLA AYI EA+EGH
Sbjct:  155 GYFKRYLEPTPVLLPINILEDFTKPLSLSFRLFGNILADELTVSVLVMLVPLFIPLPIMVLGVFASSIQALIFSTLAAAYIGEALEGH 242
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BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: UPI001FCDDA55 (ATP synthase CFO A subunit subunit IV n=1 Tax=Goniotrichopsis reniformis TaxID=468933 RepID=UPI001FCDDA55)

HSP 1 Score: 149 bits (376), Expect = 2.760e-43
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYF RYIEP P+LLPINILEDFTKPLSLSFRLFGNILADEL VSVLALLVPLIVPLPVM+LGVFASS+QALIFSTLA AYI EA+EGH
Sbjct:  152 GYFARYIEPVPVLLPINILEDFTKPLSLSFRLFGNILADELVVSVLALLVPLIVPLPVMVLGVFASSIQALIFSTLAAAYIGEAMEGH 239
[Close]
BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A7U0KT16_OLILU (ATP synthase CF0 subunit IV n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KT16_OLILU)

HSP 1 Score: 149 bits (376), Expect = 3.080e-43
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYFKRYIEPTP+LLPINILEDFTKPLSLSFRLFGN+LADELTVSVL +LVPL +PLP+M+LG+FASS+QALIFSTLA +YIAEAVE H
Sbjct:  158 GYFKRYIEPTPILLPINILEDFTKPLSLSFRLFGNVLADELTVSVLTMLVPLFIPLPIMVLGIFASSIQALIFSTLAASYIAEAVEDH 245
[Close]
BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Match: A0A1C9CCU5_9RHOD (ATP synthase CF0 subunit A n=5 Tax=Stylonemataceae TaxID=446133 RepID=A0A1C9CCU5_9RHOD)

HSP 1 Score: 149 bits (376), Expect = 3.340e-43
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLVPLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH 264
            GYF RYIEPTP+LLPINILEDFTKPLSLSFRLFGNILADEL V+VLALLVPLIVPLPVM+LGVFASS+QALIFSTL+ AYI EA+EGH
Sbjct:  160 GYFARYIEPTPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLALLVPLIVPLPVMVLGVFASSIQALIFSTLSAAYIGEAMEGH 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68371.14761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J792_ECTSI1.180e-48100.00ATP synthase subunit a, chloroplastic n=40 Tax=Pha... [more]
A0A8F0F721_9PHAE1.960e-4796.59ATP synthase CF0 A subunit subunit IV n=1 Tax=Prot... [more]
A0A8E6D5Q8_9PHAE2.780e-4797.73ATP synthase subunit a, chloroplastic n=1 Tax=Ishi... [more]
A0A141BSD6_9PHAE9.020e-4690.91ATP synthase subunit a, chloroplastic n=14 Tax=Fuc... [more]
A0A6P0NHI3_9CYAN3.280e-4488.64F0F1 ATP synthase subunit A (Fragment) n=1 Tax=Moo... [more]
UPI001FCDC1CA9.190e-4489.77ATP synthase CFO A subunit subunit IV n=2 Tax=Rhod... [more]
B2XT85_HETAK1.410e-4386.36ATP synthase subunit a, chloroplastic n=2 Tax=Hete... [more]
UPI001FCDDA552.760e-4389.77ATP synthase CFO A subunit subunit IV n=1 Tax=Goni... [more]
A0A7U0KT16_OLILU3.080e-4385.23ATP synthase CF0 subunit IV n=1 Tax=Olisthodiscus ... [more]
A0A1C9CCU5_9RHOD3.340e-4388.64ATP synthase CF0 subunit A n=5 Tax=Stylonemataceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68371contigH-paniculata_contig68371:1..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3e-38
Seed eggNOG ortholog2880.D1J792
Preferred nameATP6
KEGG koko:K02108,ko:K02126,ko:K02967
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko03010,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map03010,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158,M00178,M00179
Hectar predicted targeting categorysignal anchor
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008324,GO:0008340,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009628,GO:0009987,GO:0010259,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031226,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0036296,GO:0036442,GO:0040011,GO:0042407,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046716,GO:0046907,GO:0046933,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0055093,GO:0060249,GO:0061024,GO:0065007,GO:0065008,GO:0070050,GO:0070482,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098807,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGsCOG0356@1,KOG4665@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00194,ko03011,ko03029,ko03110
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.0501568-CDS-H-paniculata_contig68371:0..2671622930817.0501568-CDS-H-paniculata_contig68371:0..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68371 1..267 +
1691481465.6425576-CDS-H-paniculata_contig68371:0..2671691481465.6425576-CDS-H-paniculata_contig68371:0..267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68371 1..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68371.14761.1prot_H-paniculata_contig68371.14761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68371 1..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68371.14761.1

>prot_H-paniculata_contig68371.14761.1 ID=prot_H-paniculata_contig68371.14761.1|Name=mRNA_H-paniculata_contig68371.14761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
GYFKRYIEPTPLLLPINILEDFTKPLSLSFRLFGNILADELTVSVLALLV
PLIVPLPVMLLGVFASSVQALIFSTLAGAYIAEAVEGH*
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mRNA from alignment at H-paniculata_contig68371:1..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68371.14761.1 ID=mRNA_H-paniculata_contig68371.14761.1|Name=mRNA_H-paniculata_contig68371.14761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig68371:1..267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTACTTTAAACGTTACATAGAACCTACACCGCTTTTATTACCAATTAA
TATACTAGAAGATTTTACAAAACCTCTTTCACTAAGTTTTCGTTTATTTG
GTAATATTTTAGCCGATGAATTAACGGTTTCTGTATTAGCCTTATTAGTT
CCTTTAATTGTACCATTACCGGTTATGTTATTAGGAGTGTTTGCTAGTTC
AGTCCAAGCATTAATTTTTTCAACTTTAGCTGGTGCGTATATTGCTGAAG
CTGTTGAAGGACATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig68371:1..267+

>mRNA_H-paniculata_contig68371.14761.1 ID=mRNA_H-paniculata_contig68371.14761.1|Name=mRNA_H-paniculata_contig68371.14761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig68371:1..267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTACTTTAAACGTTACATAGAACCTACACCGCTTTTATTACCAATTAA
TATACTAGAAGATTTTACAAAACCTCTTTCACTAAGTTTTCGTTTATTTG
GTAATATTTTAGCCGATGAATTAACGGTTTCTGTATTAGCCTTATTAGTT
CCTTTAATTGTACCATTACCGGTTATGTTATTAGGAGTGTTTGCTAGTTC
AGTCCAAGCATTAATTTTTTCAACTTTAGCTGGTGCGTATATTGCTGAAG
CTGTTGAAGGACATTAAGGTTACTTTAAACGTTACATAGAACCTACACCG
CTTTTATTACCAATTAATATACTAGAAGATTTTACAAAACCTCTTTCACT
AAGTTTTCGTTTATTTGGTAATATTTTAGCCGATGAATTAACGGTTTCTG
TATTAGCCTTATTAGTTCCTTTAATTGTACCATTACCGGTTATGTTATTA
GGAGTGTTTGCTAGTTCAGTCCAAGCATTAATTTTTTCAACTTTAGCTGG
TGCGTATATTGCTGAAGCTGTTGAAGGACATTAA
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