mRNA_H-paniculata_contig68214.14743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68214.14743.1
Unique NamemRNA_H-paniculata_contig68214.14743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.360e-34
Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            W   M  EV GL    T++ A  +P   + ID++W F WK DE G +V AKARLV +G   + G   + TFSPT    ++R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  SG +VRL K+LY L+Q+SR  +  L   L   GFEQS++DPCV R   GDEV
Sbjct:  463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 637          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.030e-33
Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            W   M  EV GL    T++ A  +P   + ID++W F WK DE G +V AKARLV +G   + G   + TFSPT    ++R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  SG +VRL K+LY L+Q+SR  +  L   L   GFEQS++DPCV R   GDEV
Sbjct:  730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 904          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.790e-33
Identity = 76/171 (44.44%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   13 MKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            M  EV GL    T++ A  +P   + ID++W F WK DE G +V AKARLV +G   + G   V TFSPT    ++R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  SG +VRL K+LY L+Q SR  +  L   L   GFEQS++DPCV R   GDEV
Sbjct:    1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEV 171          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.340e-32
Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 1
Query:   13 MKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            M  EV GL    T++ A  +P   + ID++W F W  DE   +V AKARLV +G   + G   + TFSPT    ++R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  SG +VRL K+LY L+Q+SR  +  L   L   GFEQS++DPCV R   GDEV
Sbjct:    1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 171          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.000e-31
Identity = 74/175 (42.29%), Postives = 101/175 (57.71%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            W      EV GL    T++ A  +P   + ID++W F WK DE G +V AKARLV +G   + G   + TFSPT    + R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  S  +VRL K+LY L+Q+SR  +  L   L   GFEQS++DPCV R   GDEV
Sbjct:  904 WEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 1078          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.450e-30
Identity = 71/175 (40.57%), Postives = 101/175 (57.71%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*E--IGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            W + M  E  GL    T++ A+  P   + I+++W + WK DE G +V A+ARLV  G   +  +  + TFSPT   ++ R+   LAC      F+F++EQ FVQS+L+  V+M+   G    +G +VR+ K+LY LRQ+SR     L   L   GFEQSL+DPCV R   GDEV
Sbjct:  144 WGKAMSAEFEGLLRAGTFALAEKAPLGCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFVQSELDHEVFMKLPPGCKSMTGKVVRIDKSLYGLRQASRTFHKRLVSDLNCMGFEQSLSDPCVLRFVMGDEV 318          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JKF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.510e-30
Identity = 78/180 (43.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGD----N*EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEVAVL 528
            W + +  E  GL    T+SP       E+ I +KW F  K DEYG     KARLV RGD    + + GE+  F+PT  V++ R+ A LAC Q   + +FD++Q FVQS+L+  V+MR  QG G+ SG IV+LCK+LY L+Q+SR   ++L R L   GF Q LAD CV+RL +   V ++
Sbjct:  368 WDDAVGREFFGLLDAGTFSPVKQPV--ENAIIAKWVFNCKADEYGRPTKFKARLVARGDMQRASIDFGEL--FAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMI 543          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.330e-30
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
            W      EV GL    T++ A  +P   + ID++W F WK DE G +V AKARLV +G   + G   + TFSPT    + R+   LAC     + ++D+EQ FVQS+L+  V+M+   G G  S  +VRL K+LY L+Q+SR  +  L   L   GFEQS++DPCV     GDEV
Sbjct:  694 WEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEV 868          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.110e-30
Identity = 81/179 (45.25%), Postives = 108/179 (60.34%), Query Frame = 1
Query:    7 ETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*----EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLT-DGDEVAVL 528
            ++M+ E  GL    T +PA      E+ I+ KW F WK DE+G+    K+RLV RGD      + GE+  ++PT  V+  R+ A LAC     + +FD+EQ FV+S+LE  VYMR  QG G  SG IV+L K+LY LRQ+SR+    L R L A GFEQ +AD CV+RL  DG  V +L
Sbjct:  640 DSMQREFYGLLEAGTCTPAKQQL-VENAINDKWVFDWKADEFGWPTKVKSRLVARGDMQREYIDFGEL--YAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRSPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLIL 815          
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5J8Q9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.360e-29
Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLT-DGDEVAVL 528
            W ++M+ E  GL    T+ PA +    E+ I++KW F WK DE+G     K+RLV RGD               V+   + A LAC     + +FD+EQ FV+S+LE  VYMR  QG G  SG IV+L K+LY LRQ+SR+    L R L A GFEQ +AD CV+RL  DG  V +L
Sbjct:  133 WSDSMQREFYGLLEAGTFFPAKEQL-AENAINAKWVFDWKADEFGCPTKVKSRLVARGD--------MQREYRSVSCVTMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWRAMLKRCLVALGFEQCMADACVFRLIEDGCVVLIL 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE5.360e-3443.43Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.030e-3343.43Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K9B2_9PHAE1.790e-3344.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQD0_9PHAE1.340e-3242.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE2.000e-3142.29Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKT7_9PHAE1.450e-3040.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKF2_9PHAE1.510e-3043.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE2.330e-3041.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP2_9PHAE3.110e-3045.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8Q9_9PHAE6.360e-2943.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68214contigH-paniculata_contig68214:216..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.6182477-UTR-H-paniculata_contig68214:215..5481622930814.6182477-UTR-H-paniculata_contig68214:215..548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68214 216..548 +
1691481464.7275789-UTR-H-paniculata_contig68214:215..5481691481464.7275789-UTR-H-paniculata_contig68214:215..548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig68214 216..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930814.670995-CDS-H-paniculata_contig68214:548..7431622930814.670995-CDS-H-paniculata_contig68214:548..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68214 549..743 +
1691481464.7373447-CDS-H-paniculata_contig68214:548..7431691481464.7373447-CDS-H-paniculata_contig68214:548..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68214 549..743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68214.14743.1prot_H-paniculata_contig68214.14743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68214 549..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68214.14743.1

>prot_H-paniculata_contig68214.14743.1 ID=prot_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLAD
PCVYRLTDGDEVAVL
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mRNA from alignment at H-paniculata_contig68214:216..743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68214.14743.1 ID=mRNA_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig68214:216..743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTCGAAACAATGAAGGTAGAGGTTGGCGGTTTGGAGGCCAACGAGAC TTGGTCCCCGGCAGACGATCTCCCAGATGAAGAATCTCCGATCGACTCAA AGTGGGGTTTTTAGTGGAAAACCGACGAATATGGATACGTCGTGACAGCC AAGGCACGGTTAGTTTTCAGAGGCGACAATTAGGAGATAGGGGAGGTTTT GACGTTCTCTCCTACCCCCCCTGTAACCACTAACAGAGTAGCCGCAGAAT TAGCATGTGCGCAGGGAAGAAGGATATTTTATTTTGATGTCGAGCAGACT TTCGTACAGTCCGATCTTGAAGGTGTCGTTTATATGCGATTCTCTCAAGG TCTTGGTAAACGGTCAGGTACTATCGTGCGCCTTTGCAAAAATTTGTATA GCCTTCGCCAGTCATCGAGGGAATCGTTTACAAACCTAGCAAGAACTCTA GGCGCATACGGTTTTGAACAGAGCTTAGCTGACCCATGCGTTTACCGGTT GACGGACGGAGATGAGGTGGCGGTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig68214:216..743+

>mRNA_H-paniculata_contig68214.14743.1 ID=mRNA_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig68214:216..743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATTCTCTCAAGGTCTTGGTAAACGGTCAGGTACTATCGTGCGCCT
TTGCAAAAATTTGTATAGCCTTCGCCAGTCATCGAGGGAATCGTTTACAA
ACCTAGCAAGAACTCTAGGCGCATACGGTTTTGAACAGAGCTTAGCTGAC
CCATGCGTTTACCGGTTGACGGACGGAGATGAGGTGGCGGTCTTGATGCG
ATTCTCTCAAGGTCTTGGTAAACGGTCAGGTACTATCGTGCGCCTTTGCA
AAAATTTGTATAGCCTTCGCCAGTCATCGAGGGAATCGTTTACAAACCTA
GCAAGAACTCTAGGCGCATACGGTTTTGAACAGAGCTTAGCTGACCCATG
CGTTTACCGGTTGACGGACGGAGATGAGGTGGCGGTCTTG
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