mRNA_H-paniculata_contig68214.14743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 136 bits (343), Expect = 5.360e-34 Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
W M EV GL T++ A +P + ID++W F WK DE G +V AKARLV +G + G + TFSPT ++R+ LAC + ++D+EQ FVQS+L+ V+M+ G G SG +VRL K+LY L+Q+SR + L L GFEQS++DPCV R GDEV
Sbjct: 463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 637
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.030e-33 Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
W M EV GL T++ A +P + ID++W F WK DE G +V AKARLV +G + G + TFSPT ++R+ LAC + ++D+EQ FVQS+L+ V+M+ G G SG +VRL K+LY L+Q+SR + L L GFEQS++DPCV R GDEV
Sbjct: 730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 904
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.790e-33 Identity = 76/171 (44.44%), Postives = 102/171 (59.65%), Query Frame = 1
Query: 13 MKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
M EV GL T++ A +P + ID++W F WK DE G +V AKARLV +G + G V TFSPT ++R+ LAC + ++D+EQ FVQS+L+ V+M+ G G SG +VRL K+LY L+Q SR + L L GFEQS++DPCV R GDEV
Sbjct: 1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLRFMMGDEV 171
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.340e-32 Identity = 73/171 (42.69%), Postives = 101/171 (59.06%), Query Frame = 1
Query: 13 MKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
M EV GL T++ A +P + ID++W F W DE +V AKARLV +G + G + TFSPT ++R+ LAC + ++D+EQ FVQS+L+ V+M+ G G SG +VRL K+LY L+Q+SR + L L GFEQS++DPCV R GDEV
Sbjct: 1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 171
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.000e-31 Identity = 74/175 (42.29%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
W EV GL T++ A +P + ID++W F WK DE G +V AKARLV +G + G + TFSPT + R+ LAC + ++D+EQ FVQS+L+ V+M+ G G S +VRL K+LY L+Q+SR + L L GFEQS++DPCV R GDEV
Sbjct: 904 WEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 1078
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.450e-30 Identity = 71/175 (40.57%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*E--IGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
W + M E GL T++ A+ P + I+++W + WK DE G +V A+ARLV G + + + TFSPT ++ R+ LAC F+F++EQ FVQS+L+ V+M+ G +G +VR+ K+LY LRQ+SR L L GFEQSL+DPCV R GDEV
Sbjct: 144 WGKAMSAEFEGLLRAGTFALAEKAPLGCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFVQSELDHEVFMKLPPGCKSMTGKVVRIDKSLYGLRQASRTFHKRLVSDLNCMGFEQSLSDPCVLRFVMGDEV 318
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5JKF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF2_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.510e-30 Identity = 78/180 (43.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGD----N*EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEVAVL 528
W + + E GL T+SP E+ I +KW F K DEYG KARLV RGD + + GE+ F+PT V++ R+ A LAC Q + +FD++Q FVQS+L+ V+MR QG G+ SG IV+LCK+LY L+Q+SR ++L R L GF Q LAD CV+RL + V ++
Sbjct: 368 WDDAVGREFFGLLDAGTFSPVKQPV--ENAIIAKWVFNCKADEYGRPTKFKARLVARGDMQRASIDFGEL--FAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMI 543
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.330e-30 Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGE--VLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLTDGDEV 519
W EV GL T++ A +P + ID++W F WK DE G +V AKARLV +G + G + TFSPT + R+ LAC + ++D+EQ FVQS+L+ V+M+ G G S +VRL K+LY L+Q+SR + L L GFEQS++DPCV GDEV
Sbjct: 694 WEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEV 868
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5KIP2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP2_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.110e-30 Identity = 81/179 (45.25%), Postives = 108/179 (60.34%), Query Frame = 1
Query: 7 ETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*----EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLT-DGDEVAVL 528
++M+ E GL T +PA E+ I+ KW F WK DE+G+ K+RLV RGD + GE+ ++PT V+ R+ A LAC + +FD+EQ FV+S+LE VYMR QG G SG IV+L K+LY LRQ+SR+ L R L A GFEQ +AD CV+RL DG V +L
Sbjct: 640 DSMQREFYGLLEAGTCTPAKQQL-VENAINDKWVFDWKADEFGWPTKVKSRLVARGDMQREYIDFGEL--YAPTVSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRSPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLIL 815
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Match: A0A6H5J8Q9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q9_9PHAE) HSP 1 Score: 118 bits (296), Expect = 6.360e-29 Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 1
Query: 1 WLETMKVEVGGLEANETWSPADDLPDEESPIDSKWGF*WKTDEYGYVVTAKARLVFRGDN*EIGEVLTFSPTPPVTTNRVAAELACAQGRRIFYFDVEQTFVQSDLEGVVYMRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADPCVYRLT-DGDEVAVL 528
W ++M+ E GL T+ PA + E+ I++KW F WK DE+G K+RLV RGD V+ + A LAC + +FD+EQ FV+S+LE VYMR QG G SG IV+L K+LY LRQ+SR+ L R L A GFEQ +AD CV+RL DG V +L
Sbjct: 133 WSDSMQREFYGLLEAGTFFPAKEQL-AENAINAKWVFDWKADEFGCPTKVKSRLVARGD--------MQREYRSVSCVTMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWRAMLKRCLVALGFEQCMADACVFRLIEDGCVVLIL 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68214.14743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig68214.14743.1 >prot_H-paniculata_contig68214.14743.1 ID=prot_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp MRFSQGLGKRSGTIVRLCKNLYSLRQSSRESFTNLARTLGAYGFEQSLADback to top mRNA from alignment at H-paniculata_contig68214:216..743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig68214.14743.1 ID=mRNA_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig68214:216..743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig68214:216..743+ >mRNA_H-paniculata_contig68214.14743.1 ID=mRNA_H-paniculata_contig68214.14743.1|Name=mRNA_H-paniculata_contig68214.14743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig68214:216..743+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |