mRNA_H-paniculata_contig6801.14720.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6801.14720.1
Unique NamemRNA_H-paniculata_contig6801.14720.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: D8LR87_ECTSI (Binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR87_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 6.200e-79
Identity = 127/214 (59.35%), Postives = 162/214 (75.70%), Query Frame = 2 
Query:  452 SAQDTFESYQGGDYTVFVGRGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAAL--APYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGASGDYMYDLAKVHIVVRDW 1087
            +  + FE+Y GGDY +FVGRGM RFR G V  S++D+DRA+ LQPRL  YMWQRG+SLYYADRFEEG++QFRKDV +NP+D EEAIW FMCE+RI  +GF  A+++++    +RRPYMRAAY+LF G++ E +LA+QM+        GS G+  AA   APYFYANLYLGL++EAKGD  LAR+YI+AA +S Y  SGDYM D+A+VH   R W
Sbjct:    3 TTHEDFETYDGGDYKIFVGRGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADRFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQME--------GSLGSNGAAGSGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 208
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: A0A6H5L4Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y5_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 8.660e-79
Identity = 124/212 (58.49%), Postives = 160/212 (75.47%), Query Frame = 2 
Query:  452 SAQDTFESYQGGDYTVFVGRGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGASGDYMYDLAKVHIVVRDW 1087
            +  + FE+Y GGDY +FVGRGM RFR G V  S++D+DRA+ LQPRL  YMWQRG+SLYYAD+FEEG++QFRKDV +NP+D EEAIW FMCE+RI  +GF  A+++++    +RRPYMRAAY+LF G++ E +LA+QM++      V  SG      APYFY NLYLGL++EAKGD  LAR+YI+AA +S Y  SGDYM D+A+VH  VR W
Sbjct:   64 TTHEDFEAYDGGDYKIFVGRGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAGSG------APYFYVNLYLGLYSEAKGDDVLARKYISAAVRSPYAKSGDYMCDVARVHQQVRGW 269
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: A0A835ZJI4_9STRA (Binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI4_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.090e-61
Identity = 113/206 (54.85%), Postives = 141/206 (68.45%), Query Frame = 2 
Query:  470 ESYQGGDYTVFVGRGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGASGDYMYDLAKVHIVVRDW 1087
            E+Y G +  V++ RGM RFR+ +V+ESI+D+DRAL L P L PY+WQRGLSLYYADRF EGA QFR DV VNP+D EEAIWAF CEAR   +GF  AR+++L  G D RPYMR AY+LF G + E +LA           VG + ++      +FYANLYLGL+AE + + +LAR YI  A  S Y A+GDYM  LA+VH  VR W
Sbjct:   13 ETYTGSNPKVYIVRGMERFRKAKVQESISDFDRALQLSPALGPYLWQRGLSLYYADRFAEGAAQFRLDVSVNPNDTEEAIWAFACEART--LGFQEARKRLLKVGQDTRPYMRTAYSLFQGSTSEQDLAM----------VGQTDDRS-----HFYANLYLGLYAECREEVDLARHYIGLAVGSKYCATGDYMCSLARVHQKVRGW 201
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BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: A0A7S1JEY7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JEY7_9EUGL)

HSP 1 Score: 197 bits (502), Expect = 1.530e-53
Identity = 103/192 (53.65%), Postives = 127/192 (66.15%), Query Frame = 2 
Query:  512 GMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGASGDYMYDLAKVHIVVRDW 1087
            GM +F +G V+ SI D+DR +   PR+ PYMWQRGLSLYYA+  +EG++QFR+DV VNP+D EEAIWAF+CEAR   IGF+ AR  ML  G D RPYMRAAY LF G   E  L +    G ++                FY+NLYLGL+AEAKGD+  A++YI+AA  S Y  SGDYMY LA VH  +R W
Sbjct:  167 GMQKFTKGDVQGSIEDFDRIIAGAPRMEPYMWQRGLSLYYAEELQEGSRQFRRDVAVNPNDTEEAIWAFLCEARDPSIGFEKARTNMLQVGRDSRPYMRAAYDLFRGTGTEEGLKQAAVDGPSE----------------FYSNLYLGLYAEAKGDSVAAQQYISAAVNSPYRRSGDYMYALAVVHKNLRGW 342
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BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: W7U3Q5_9STRA (Tetratricopeptide TPR2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.180e-51
Identity = 106/199 (53.27%), Postives = 136/199 (68.34%), Query Frame = 2 
Query:  497 VFVGRGMARFREGRVKESIADYDRALLLQ-PRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYG-ASGDYMYDLAKVHIVVRDW 1087
            V V  GM  FR G V+ SI  +D ALLL   +L PY+WQRGLSLYYA R+ EGA+QFRKDV VNP+D EEAIWAF+CEA+++G  F+ ARR+ML    D RPYMR AY LF G   E +LA++          G++ + PAA    FYA LYLGL+AEA+ +A+ AR YI A+  + YG A+ DYM  LA+VH+++R W
Sbjct:   81 VLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVDG--FEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKE----------GANLSSPAA----FYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: Q8GUK5_ARATH (At3g05625 n=9 Tax=Brassicaceae TaxID=3700 RepID=Q8GUK5_ARATH)

HSP 1 Score: 184 bits (468), Expect = 8.830e-50
Identity = 100/196 (51.02%), Postives = 125/196 (63.78%), Query Frame = 2 
Query:  503 VGRGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGA-SGDYMYDLAKVHIVVRDW 1087
            V RGM  FR+G V  S+A++DRA++L PR + Y+WQRGLSLYY DRFEEGA+QFR DV  NP+D EE+IW F+CEAR+ G+  D AR Q L  G D RP MR AY LF    D  +L      G A              + YFYA+LY GL+ EA+G +E A+ ++TAA  S YG  S DYM  LAKVH + R+W
Sbjct:   73 VRRGMQLFRQGDVAGSVAEFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGV--DVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQA--------------SEYFYASLYAGLYYEAEGKSENAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNW 252
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: A0A7R9Y5R2_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y5R2_MICPS)

HSP 1 Score: 184 bits (468), Expect = 9.940e-50
Identity = 102/194 (52.58%), Postives = 122/194 (62.89%), Query Frame = 2 
Query:  509 RGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYG-ASGDYMYDLAKVHIVVRDW 1087
            RGMA+F    V+ S+AD+D+ + L  R  PYMWQRGLSLYY D F+ GA QFR+DV VNP+D EEAIWAF+CEAR     F+GA++ ML  G D R YMR AYALF+G+  E  +    K   AD                FYA LYLGL+ E++GDAE AR  I AAA S YG  SGDYM  LA VH+  R W
Sbjct:   81 RGMAKFARDDVEGSVADFDQVIALDGRRAPYMWQRGLSLYYLDDFDAGAAQFRRDVAVNPNDTEEAIWAFLCEARSPRGSFEGAKKNMLTVGPDPRGYMREAYALFAGDGSEERMREIAKRSAAD---------------EFYAKLYLGLYKESRGDAEGARVDIAAAANSAYGRGSGDYMAALADVHLKRRGW 259
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: A0A7S0D5P5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D5P5_MICPS)

HSP 1 Score: 182 bits (461), Expect = 2.500e-49
Identity = 101/194 (52.06%), Postives = 121/194 (62.37%), Query Frame = 2 
Query:  509 RGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGA-SGDYMYDLAKVHIVVRDW 1087
            RGMA+F +G V  SIAD+D  +   P   PYMWQRGLSLYYA+R  EG+ QFR+DV VNP+D EEA+WAF+CEAR + IGF+ AR  +L  G D R YMRAAYALF+G  DE  L      G A              A  FY  LYLGL+ EAKGD   A+  + AA  + YG+ SGDYM  LA+VH   R W
Sbjct:   35 RGMAKFTQGDVDGSIADFDAVIAAAPGRAPYMWQRGLSLYYAERLREGSAQFRRDVAVNPNDTEEAVWAFLCEARDKDIGFEKAREDLLVVGRDPRAYMRAAYALFAGTGDEDSLRAVAANGGA--------------AEDFYTWLYLGLYREAKGDENGAKAAVLAAVATPYGSRSGDYMAALAEVHAKRRGW 214
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: C1MGM8_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MGM8_MICPC)

HSP 1 Score: 180 bits (457), Expect = 3.610e-49
Identity = 101/194 (52.06%), Postives = 121/194 (62.37%), Query Frame = 2 
Query:  509 RGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYG-ASGDYMYDLAKVHIVVRDW 1087
            RGMA+F    V+ S+AD+D+ + L  R  PYMWQRGLSLYY D F+ GA QFR+DV VNP+D EEAIWAF+CE R     F+GA++ ML  G D R YMR AYALF+G+  E  +    K   AD                FYA LYLGL+ E++GDAE AR  I AAA S YG  SGDYM  LA VH+  R W
Sbjct:   10 RGMAKFARDDVEGSVADFDQVIALDGRRAPYMWQRGLSLYYLDDFDAGAAQFRRDVAVNPNDTEEAIWAFLCEVR----SFEGAKKNMLTVGPDPRGYMREAYALFAGDGSEERMREIAKRSAAD---------------EFYAKLYLGLYKESRGDAEGARVDIAAAANSAYGRGSGDYMAALADVHLKRRGW 184
[Close]
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Match: UPI00053C0F11 (uncharacterized protein LOC104802790 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0F11)

HSP 1 Score: 182 bits (463), Expect = 4.360e-49
Identity = 99/196 (50.51%), Postives = 125/196 (63.78%), Query Frame = 2 
Query:  503 VGRGMARFREGRVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVNPSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGESDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAELARRYITAAAKSDYGA-SGDYMYDLAKVHIVVRDW 1087
            + RGM  FR+G V  S+A++DRA+ L PR + Y+WQRGLSLYY DRFEEGA+QFR DV  NP+D EE+IW F+CEAR+ G+  D AR+Q L  G D RP MR AY +F    D  +L      G A+               YFYA+LY GL+ EA+G  E A+ +ITAA +S YG  S DYM  LAKVH + R+W
Sbjct:   73 IRRGMLLFRQGDVSGSLAEFDRAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEARLYGV--DEARKQFLEVGRDPRPVMREAYNMFKNGGDPEKLVNIFSSGQAN--------------EYFYASLYSGLYYEAEGKPEEAKSHITAACESPYGQRSDDYMASLAKVHCLCRNW 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6801.14720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR87_ECTSI6.200e-7959.35Binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4Y5_9PHAE8.660e-7958.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJI4_9STRA1.090e-6154.85Binding protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1JEY7_9EUGL1.530e-5353.65Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7U3Q5_9STRA2.180e-5153.27Tetratricopeptide TPR2 n=1 Tax=Nannochloropsis gad... [more]
Q8GUK5_ARATH8.830e-5051.02At3g05625 n=9 Tax=Brassicaceae TaxID=3700 RepID=Q8... [more]
A0A7R9Y5R2_MICPS9.940e-5052.58Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
A0A7S0D5P5_MICPS2.500e-4952.06Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1MGM8_MICPC3.610e-4952.06Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
UPI00053C0F114.360e-4950.51uncharacterized protein LOC104802790 n=1 Tax=Taren... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6801contigH-paniculata_contig6801:2782..9885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue5.3e-68
Seed eggNOG ortholog2880.D8LR87
Hectar predicted targeting categorysignal peptide
EggNOG OGs28IPX@1,2QR10@2759
Ec32 ortholog descriptionTetratricopeptide repeat-containing domain protein
Ec32 orthologEc-06_003480.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2183
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6801.14720.1prot_H-paniculata_contig6801.14720.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6801 3017..8792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.4464822-UTR-H-paniculata_contig6801:2781..30161622930811.4464822-UTR-H-paniculata_contig6801:2781..3016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6801 2782..3016 +
1691481463.2532465-UTR-H-paniculata_contig6801:2781..30161691481463.2532465-UTR-H-paniculata_contig6801:2781..3016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6801 2782..3016 +
1622930811.5975132-UTR-H-paniculata_contig6801:8792..98851622930811.5975132-UTR-H-paniculata_contig6801:8792..9885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6801 8793..9885 +
1691481463.3310323-UTR-H-paniculata_contig6801:8792..98851691481463.3310323-UTR-H-paniculata_contig6801:8792..9885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6801 8793..9885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.4632597-CDS-H-paniculata_contig6801:3016..32911622930811.4632597-CDS-H-paniculata_contig6801:3016..3291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 3017..3291 +
1691481463.2711775-CDS-H-paniculata_contig6801:3016..32911691481463.2711775-CDS-H-paniculata_contig6801:3016..3291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 3017..3291 +
1622930811.4779556-CDS-H-paniculata_contig6801:3906..40281622930811.4779556-CDS-H-paniculata_contig6801:3906..4028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 3907..4028 +
1691481463.2806106-CDS-H-paniculata_contig6801:3906..40281691481463.2806106-CDS-H-paniculata_contig6801:3906..4028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 3907..4028 +
1622930811.4996414-CDS-H-paniculata_contig6801:4572..46151622930811.4996414-CDS-H-paniculata_contig6801:4572..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 4573..4615 +
1691481463.2902358-CDS-H-paniculata_contig6801:4572..46151691481463.2902358-CDS-H-paniculata_contig6801:4572..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 4573..4615 +
1622930811.5182555-CDS-H-paniculata_contig6801:6591..67021622930811.5182555-CDS-H-paniculata_contig6801:6591..6702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 6592..6702 +
1691481463.2993438-CDS-H-paniculata_contig6801:6591..67021691481463.2993438-CDS-H-paniculata_contig6801:6591..6702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 6592..6702 +
1622930811.5317175-CDS-H-paniculata_contig6801:7865..80771622930811.5317175-CDS-H-paniculata_contig6801:7865..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 7866..8077 +
1691481463.309039-CDS-H-paniculata_contig6801:7865..80771691481463.309039-CDS-H-paniculata_contig6801:7865..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 7866..8077 +
1622930811.549683-CDS-H-paniculata_contig6801:8700..87921622930811.549683-CDS-H-paniculata_contig6801:8700..8792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 8701..8792 +
1691481463.3195055-CDS-H-paniculata_contig6801:8700..87921691481463.3195055-CDS-H-paniculata_contig6801:8700..8792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6801 8701..8792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6801.14720.1

>prot_H-paniculata_contig6801.14720.1 ID=prot_H-paniculata_contig6801.14720.1|Name=mRNA_H-paniculata_contig6801.14720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MSSWTSSALLAVPIVLALPALLLTEAFITTIAVGKRTTCSPPFDDDSNKA
TQQQRQQRRRRPQQPQQERVTMSAQDTFESYQGGDYTVFVGRGMARFREG
RVKESIADYDRALLLQPRLRPYMWQRGLSLYYADRFEEGAKQFRKDVDVN
PSDMEEAIWAFMCEARIEGIGFDGARRQMLPAGADRRPYMRAAYALFSGE
SDELELARQMKIGTADLPVGSSGNKPAALAPYFYANLYLGLFAEAKGDAE
LARRYITAAAKSDYGASGDYMYDLAKVHIVVRDW*
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mRNA from alignment at H-paniculata_contig6801:2782..9885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6801.14720.1 ID=mRNA_H-paniculata_contig6801.14720.1|Name=mRNA_H-paniculata_contig6801.14720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7104bp|location=Sequence derived from alignment at H-paniculata_contig6801:2782..9885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGAATCTTGACGAATTACGTCGATGTAGTATGTCTTGGTGGTGTATT
TCACTTGATAATAGGATTGAACCTACCCTGGCCAATCACAGCGACAAGGG
TCCCTCCGAGAAAGGAACATTGAACGTTCAGGCCGACGTTGGGCAACCTC
ACAGCCCAGAACGCACAGAAGACAATAGAGGAGTCATATCTCTGTCATCC
TACTATCCTCCGCATTTGTGACAAGTGCCTCTTGAATGTCATCCTGGACC
TCCAGCGCACTGCTCGCTGTGCCAATCGTGCTAGCCCTTCCAGCTCTTCT
ACTCACAGAGGCGTTCATAACTACGATTGCCGTTGGGAAGAGAACTACCT
GCTCACCGCCTTTCGACGACGACAGCAACAAGGCAACACAGCAACAACGC
CAGCAGCGACGACGGCGGCCACAGCAGCCACAGCAGGAACGTGTTACAAT
GTCTGCGCAGGATACCTTCGAGAGTTACCAAGGCGGCGACTACACTGTCT
TCGTTGGCAGGTGCGCGGTGTGTCCAGAAGCGGTATTTGCATTGCTCTTT
CACACTGCACATCTCGTCCCGAACCTTCAAGTGCACCACACCCACGCACC
GACTGTACAGAGTTCTGTACTATGTACCGTACTGTCGTCGAGTGTCTGTT
ACATAATGGATCTCCACAGACCGTCAAAGTATTTCCAAGTGTTGTCATGC
TAGCCAACACCCCAAATGAATGATCATGATCGCTATGCTCATGGTTGCCG
CCTTCGTAACGAGGCCAGGACGTCACGCTGTCCGACTGCGCTCGAGTTTC
TATGCCGTGAATATTGAAAACATTGAACGGTCTGTACCGGTTCGGTGTTG
CTATGCGTGGATATTATCGTCGCAAGGAAAGAGCTTGGGTGCTGCAGCCA
TTCACAAATAGAGTCAGCCCGTCGCCTTTTGATTTTTTATGGTATGGCGC
CTGCTATGTGATGCAGGATGCCTGCGCGGGCCTTCTTTTCTACCTGTCTT
GCCACCCGCCTGTGCTCGCTCTTATTCCCCAGGTAAAATAGACCCTACCC
ATGACAGATATTATCTTCCTGGTGTTGTGTTGTCGAAAAACGATTGCTGT
GCGTTGCATATAACTCTCTTTCCAGAGGAATGGCGAGATTTCGAGAAGGG
CGAGTGAAGGAATCCATCGCTGACTATGATCGTGCGCTGCTTTTGCAGCC
AAGACTTCGACCTTACATGTGGCAAAGAGGCTTATCGCTGTACTACGGTG
AGTAATCTACCTTCGTGCGTATGTTCACTCTGCAACTTAGTGATGGATGG
CATTCCCCTGCTGGTTCGAACAGCTGCTGTGTGTGGATGGTGTAGATTCA
ACTTGACACGACATGTACTTTGGTGATAACGCGATTTGATTGGACTGGCT
TCTTAACTCAACCGAAGTGATTTCGTTTGTTTTCCTCTACCATGCGATCA
TGCTCTGTTGACCAGTTATCTGTAGCGTGGTCGTTGCTCAAAGTGGGCCT
CATGGATCTCTGCCCGTCTGTCTATCGGTCTGCATCGTATTACTTTCGGC
AGATAGGATACCTCTATGAACAGGAATCTCAACTAGAAAGGATAGTGTAC
GGTACACTGGGTCCAATCCAGAGAGTACTGTCTGTACACAGACTACATTA
GTACGATCATGTACAACGTATTTCTGACGATTACTGACCGCATCCATTGG
TTGTTTGCGCGCTGTGCCGGTGTTGCCGTCATACGTGACCGAACGAACAA
ACTCACGACTACCGACATGTGTCCCCGGTTAACCTACTTAGCCGACCGGT
TCGAAGAGGGTGCCAAGCAGTTCCGGAAAGATGTGTGAGTGCCCAGTAAA
ATTAGGCCCGCAAAAGATGCATTTTAGGATATGTATTCGATGGTGCATAA
AGGTTTGGACTACAGGGCAAACCGACTGTAGATGGGTTGCGTTCGCTATT
TTGTTGACCAGCTGTGCGCTCCTAGACGATGATCTTAATTTTTACTTTTA
TATCTTCTAGTCTGAATCTTGAGATTCAAGCACCCAAACCGTTACAACAG
GTGGTACATCATATACAACCGAGGAGTGGCTCATCTGCATTCTGTGCTAC
TAGTAGGGCAGGTATTCGACTTGATGAAGATGGTTGGCTGTGCTAAAATA
TGACGATCAAGATGCGTTCATATATCCATGCTGTAATAACTAAACAATAA
TGGATTGCGGCCAAGATTCGATCGCTTTTCGACCATTGTAGTTGCTATCT
GGGTCGTTGTGCTCGACTGCAATTGATGGCCGCAGAGAAGATCATATATA
ACGGAGCCAACCGGAATATTCATATGAGGATCCATTTATAGGAAACCGGA
AATCGATGTTGTGATTAGCGTGTACTCGTATATAATTTCCATTATGTTGT
TTTGCAACGCGGGCGTGGTGCGTCTCAGGTTATGTGTAATGTCGATCAAA
ACCAACAACAGTCCCTTTTCGCCTCGGAACGCGCGGTTCTCATCTAAAAG
ATCTTTTCGTTTTTTCGTTTTTTCGTTTTTTCGTTTTTTCAAGGGAGTAA
CATCGAAATGCTTCTTTCGCCTCCAGTCACGCTTTCCCAATCAAAATTTC
AGTCAAATTCTGAGTGACGGAAGAATATTTCAAAATCGAAGATCAAAGTA
GAGTATATCCACCCGAGGATAGATGTACAGCTAAATAGTAGTGTAGTGAA
GCTAAACCGCATCTCCATAAACTGAAGAGCTGGCTCCATTAGCAAAGTTG
GTGACTCTAAGAGCAAATCCGAGGAGTGAGCTGAGCAATGGTGATAATCC
AGATGCACATAAGAATTTGTTTCGTGGTGGTCACCAGTTTTTCTGAAGGG
ACCACTTCACATAATATGTATCCAATCACCATATATATTCTTTGGTGAAA
AACATAATGTTGGATCTTCATCTAGATCACGGGCAGATTCCTCCTATCCA
GCTGCCGAAACCCAACCCCACTGTATCGCTAATGCTAGCTCTAAACCGGA
ACCAGTAGATCATATAATAGTTTGTACTGGCAAGGCATACCTCTAATCAA
ACTGCTTCGGGCAAGTGGAATCGGAGTCGGGGGCGCTATTTATTTTTGGT
TGATCGGGGTATATAACAGCCCCCGGATCAACGGCCAAAAATCAATGTAG
AATTTGGCTCAAGTATCAACCATGATTTGCCGACCAGCCGCTCTTTGTTC
CTACTCCCAACATGCGCCGCACTTCGATGGTTGTATACATTCAACTTGAC
GACGTCAGCAAACTTATTCAAGATTCAGTCCCTGGTTACGCTTTGGTATC
AACTTGGTCTGTGGGCCTTTGGCGTGTAAGTAAGGGCTAGATAAACAGGC
ATGTGTTGTTATTCCGAATGCGGCACGCAACAGTCAGATGAATAAACAAG
AAAGGTAGACAGAACCCCTACCCTACTTAACCAGAATAGACACTATGGAA
TTTTATTCGGTCCGGAGCGTGGTATGATTATTTGGATTCGTCATGACGCC
TTTCGACCCTTGCGGGTAGTTTGGAGCACTGGGGACCAGGTGAGGTACGT
TGTAAAGTTAGCTGGTTAACCACCTGGCTTTATTGCAGTGTGTAAGCCAA
TTCTCCACCCTTGGGGTTTTTAAGCCCGTATCGTAAATGCGGTTTTCCTT
GGAGCGTTTTTGTTCTGTAAAGAAGCCACTTTGTTTTACCGATTCGATCG
ATATACATGACATCAAAACTTGTGTCTGAGTTGCGAGTCGGGAAGCATTG
CGAGCTGATTTCCGCTTCCACGGGGCTGCGTTGCTTTGTGCCGCTATTTT
CGTATAACAGAGATGTCAACCCAAGCGACATGGAAGAGGCAATCTGGGCG
TTCATGTGCGAAGCGAGGATAGAGGGAATCGGCTTCGATGGCGCGCGACG
ACAGATGCTACCCGCTGGCGCGTGAGTACTATACCCAACAAAAGGATAAG
AGCTTCATTTGCTTGATTTTTTATTTCCTCTTCTCTGCTGCGTCTTGGAA
TATTTTGGGATAACACAACTCATAGTACCGTTGCCTCATGTGCAGAAAAT
GAAACTTGCTGCGCGTATGCCCTCTGTCTCGTAAGTGTACTCGCTCGTGC
ACGGAGCCCCTGAGTTTGTTGTCTGTTTTTCGCACATGAGAGTTGACGTA
TTCATAACTATTGCCTTATCATAGCGATCTCCGATGAAAAATGTTTTGTG
AAATTGAGTTCCTTATTGTTCTTCACCTCGAATCAGCTTTGCCCAAGTCA
ATCAGCATCGCTCTCCTAGGCCTCACGCCGCCAATGGAGCGCCTTCATTG
AACACTTGTTTCTTCACGTGGAGTTAGAATTCAACCTATTCCTTCTGGTG
TCTTGTTGTCAAGAATCCCGCTGTGCTCCACCTCAGAGTCGTAGCCCCCA
CATAGCGTTCATTTGAACTACTATAGAAAAGGCAAGATATTATATGCAAA
CAACAACACTTGCTTGATCGGAGATCTTGATGTCAGCTGGAGTCATGACT
GTTTGTAGTCGGGTATGCCCACGAGAAAAACCAGGCCGGTCCTCGAACCC
TGAATTCCGGTCCCGTCCATTTCACGTAGGACTTGAGGAAGGTTCCAAAT
CGGAACTCAGACTATCCGATATGTTGGAGGGAGCGGACACTCGGGGCTTT
TCAACGGTCTGCACCTTTGTCCAGTGCGTGTTGGTTCACGCGGAGTTATT
CTGTACTGCCTGATAACCATGACTGACTGCTGTAGACTTGACATGGAGAG
CGAGTATAATATCAACGAGGCTTTTTCGCACGCTGCTGTCTCTGGCCTTG
GTGCTCCACCATTATCACTGTTAGGCATTTCAAGTATCCACAGACACTTG
AGTTGAACACGAACGTTTTTGCCCTCTTAATTTTGTTTGGTTTGTCGATG
AGTAATCCAGTAGCTTGGAAGATTGTCACGTATACCTGGGTTCACTTTGT
TACATTAATCTAAGTAGACTTATGGATATCTGGTTCTGGTTTTGACTTGC
GCTTACGTTCTTCATGCCTACCCCCCTACCCCGCCCCCGCCCCTCCCTCC
AATGCAATGGGATACCTGATACACGACACAACAGTGACCGACGCCCATAC
ATGCGAGCGGCATACGCCTTGTTCTCCGGAGAAAGCGATGAGCTAGAGTT
GGCGAGGCAAATGAAGATCGGCACCGCCGACTTGCCAGTGGGCAGTAGTG
GCAACAAGCCTGCGGCGTTGGCGCCTTACTTCTATGCTAACCTGTATTTG
GGACTGTTCGCAGAGGCGAAGGGTGACGCCGAGCTTGCACGACGATGTAC
GTTAAAAACAGGAGAGAGGGGTTTGAGTGAACCAATTAATCAACCTGAAT
CCACATGAATTTGAATAAAACGAAAACACCGTCAGCCATAGCAGAGAGTA
TGCTTGGAGATTTCGGCTAAAAATGTTTTCAGTCGATGAAAATGGATGAT
GCATCGGCAAGAAACGAAACATGAAGAATGCTCTGTGATGGGTCAACTGA
CGACGAGACGGCGCAAGAGGATTGATTGCGGAGCCTCACCCTTCGTTTTT
CTCAACCAGTTGATTCTTCATCTCGATGAAGATGTCCTTCAGTGATTCGA
TACATTTTCTCTGAAGATTTCTTTGTACTGTCAGGAAACTTCTTTCGCAT
CCCCATGTGTTAATATGGTAATGGTGATGATGACGTTCCTCTGGAGTAGT
TTCCGTTTTCTTTCCTAAGTGTTTTTTCACGATATGTGGTATGTATCGAA
AACAGGGCAGAGGGGTACCCAGGTATCCATGGCCTGGCTGCTGCTGTCTT
TTTTTTGTTTTTAATGCTCAAGTCCTTTTAGTTGATCAGTTCGCGCGATC
TAACGCTCAAAATGAACCACGACGTGGCATATTTCATTATTGTTTTTGCG
TTGTCCTCCCTTCTCGCAGACATAACAGCTGCGGCGAAGTCAGATTACGG
TGCTTCGGGAGACTACATGTACGACTTGGCCAAAGTTCATATCGTCGTCC
GGGACTGGTAGGACTTGGGCAATGTAATACTGCTTTGGGTGCCCAACCAT
GGTGTTATGCTCTCTGTCTCTCGTCTCGTGGGGGACAGTGACAGTGTGCT
CGTGGCCGCGACAACTTGAACAGTCCAGAGTGCGTGGAGTATTAGAGGTC
GCTACTTTTATTTATTTGCCCCCACAACGATGGGATTTTCTATGTAAAAC
TCTAGGATTAGTTTTAGTGCGTGGTGGCGTGCAGCCTCTCCGATGTTTCT
CAGTGGTTTGCTGGTGACGGGAATTACACAAATAAAGAAATTTTTCAAAT
GTGCGACGATTAATGTAGGCCTTTCTTCTGACCGCGAGGTTTACTGTTTT
CCGCTCTTTTGTATGTCATTATCCACATGCAACACTGCTGCGTTCAAGTG
TTGGTTTCTGAGCGATTTATGCTTGGTATGGTCATTTAGATGTACACTAT
GGTGGTGGACTTGAAATGTAAGAGCCAGCTGTGGGCTCTTAACGTTGACT
ATTCTGCCGGTACATCTACATCCTGTCCGTTGACTTTCAACATGGGGTAA
ATACGGTAACTCAAGCCCCAGAGTTGGAGACATCTTGTACATAGAACAGA
CAGGCGGTGTTTTCGTTCCGATATCCAGCGTTTGTATGGATTTGTTTGGG
TATCTGTTTGGGTATCTGTTGAGATATCCCTCGTGCTGATGGACTATTGT
GAGGTTGGGGTGCGTATGTTATACCTCGCTCTGATGGATGTGTACTCTCG
ACCTTCGTCTGGAGTGTTTCTTAATTCACTCTTCGTAAAACCCACTCGTA
CAGAAAAGAAGGGTTGGTCAAGAAGGACAATTGAGATAATTCGCAAGAGT
TACGCTAAATATAGGGGGTACATATTTTCCATGGCGATCTAGGGTGCCAC
ACTGATGTGTTTGGAAGAGAACAAGAGATGGCCCGCATGATCCCAAAATG
TTCCGCAGGGAGAAGCATGTCTGCGCTGGAAAGCTAAATTTCAGGTCATC
TGACGAGCCCACAGTGTTCAGCATGCGGTATTAAAAAATACGTAAAGTTT
TTTTTTTTCTTGTCTTAGTGGTGGTAACGGAGAGAAACAGGGGGTTAATG
TGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6801:2782..9885+

>mRNA_H-paniculata_contig6801.14720.1 ID=mRNA_H-paniculata_contig6801.14720.1|Name=mRNA_H-paniculata_contig6801.14720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig6801:2782..9885+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATCCTGGACCTCCAGCGCACTGCTCGCTGTGCCAATCGTGCTAGC
CCTTCCAGCTCTTCTACTCACAGAGGCGTTCATAACTACGATTGCCGTTG
GGAAGAGAACTACCTGCTCACCGCCTTTCGACGACGACAGCAACAAGGCA
ACACAGCAACAACGCCAGCAGCGACGACGGCGGCCACAGCAGCCACAGCA
GGAACGTGTTACAATGTCTGCGCAGGATACCTTCGAGAGTTACCAAGGCG
GCGACTACACTGTCTTCGTTGGCAGATGTCATCCTGGACCTCCAGCGCAC
TGCTCGCTGTGCCAATCGTGCTAGCCCTTCCAGCTCTTCTACTCACAGAG
GCGTTCATAACTACGATTGCCGTTGGGAAGAGAACTACCTGCTCACCGCC
TTTCGACGACGACAGCAACAAGGCAACACAGCAACAACGCCAGCAGCGAC
GACGGCGGCCACAGCAGCCACAGCAGGAACGTGTTACAATGTCTGCGCAG
GATACCTTCGAGAGTTACCAAGGCGGCGACTACACTGTCTTCGTTGGCAG
AGGAATGGCGAGATTTCGAGAAGGGCGAGTGAAGGAATCCATCGCTGACT
ATGATCGTGCGCTGCTTTTGCAGCCAAGACTTCGACCTTACATGTGGCAA
AGAGGCTTATCGCTGTACTACGAGGAATGGCGAGATTTCGAGAAGGGCGA
GTGAAGGAATCCATCGCTGACTATGATCGTGCGCTGCTTTTGCAGCCAAG
ACTTCGACCTTACATGTGGCAAAGAGGCTTATCGCTGTACTACGCCGACC
GGTTCGAAGAGGGTGCCAAGCAGTTCCGGAAAGATGTCCGACCGGTTCGA
AGAGGGTGCCAAGCAGTTCCGGAAAGATGTAGATGTCAACCCAAGCGACA
TGGAAGAGGCAATCTGGGCGTTCATGTGCGAAGCGAGGATAGAGGGAATC
GGCTTCGATGGCGCGCGACGACAGATGCTACCCGCTGGCGCAGATGTCAA
CCCAAGCGACATGGAAGAGGCAATCTGGGCGTTCATGTGCGAAGCGAGGA
TAGAGGGAATCGGCTTCGATGGCGCGCGACGACAGATGCTACCCGCTGGC
GCTGACCGACGCCCATACATGCGAGCGGCATACGCCTTGTTCTCCGGAGA
AAGCGATGAGCTAGAGTTGGCGAGGCAAATGAAGATCGGCACCGCCGACT
TGCCAGTGGGCAGTAGTGGCAACAAGCCTGCGGCGTTGGCGCCTTACTTC
TATGCTAACCTGTATTTGGGACTGTTCGCAGAGGCGAAGGGTGACGCCGA
GCTTGCACGACGATTGACCGACGCCCATACATGCGAGCGGCATACGCCTT
GTTCTCCGGAGAAAGCGATGAGCTAGAGTTGGCGAGGCAAATGAAGATCG
GCACCGCCGACTTGCCAGTGGGCAGTAGTGGCAACAAGCCTGCGGCGTTG
GCGCCTTACTTCTATGCTAACCTGTATTTGGGACTGTTCGCAGAGGCGAA
GGGTGACGCCGAGCTTGCACGACGATACATAACAGCTGCGGCGAAGTCAG
ATTACGGTGCTTCGGGAGACTACATGTACGACTTGGCCAAAGTTCATATC
GTCGTCCGGGACTGGTAGACATAACAGCTGCGGCGAAGTCAGATTACGGT
GCTTCGGGAGACTACATGTACGACTTGGCCAAAGTTCATATCGTCGTCCG
GGACTGGTAG
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