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Homology
BLAST of mRNA_H-paniculata_contig680.14719.1 vs. uniprot
Match: D8LTI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI3_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.000e-39 Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 1390 IAAVKTVSTPYVPPGGR--MKVESAPQND---------GESMGPLWPSGLNRKPVRVSQKARASDGGSSPSRS-SPFRVATAVSGGKSAYGVSIEEYSEKMSRGDVEACTALITNFPTSVPPGQREGLLRPFIDKGALVVWPRPDEALATFATSSLARQAISSKSIPSTALTVELLSNAKQEKR 1905
+ A K + YVPPG R + E A D G+ MGPLW S R PVRVSQ+ R SD +SP+R +P RVA VSGG SAYG +I EYSE+MSR VEACTA+++NFP ++PPGQR+ +L+ F+ G LVVWPRPDEAL TFAT +LARQA+S+++ + L VELLS A+ EKR
Sbjct: 347 LPAFKPPAARYVPPGRRKALDAELAAAADSGSSGGAAAGDGMGPLWTS---RAPVRVSQRERPSDRDASPARRPAPARVAHVVSGGMSAYGTNISEYSEEMSREQVEACTAVVSNFPVALPPGQRDSMLQSFVSLGGLVVWPRPDEALVTFATPALARQAVSARNNRDSVLFVELLSQARVEKR 527
BLAST of mRNA_H-paniculata_contig680.14719.1 vs. uniprot
Match: A0A6H5JL83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL83_9PHAE) HSP 1 Score: 164 bits (414), Expect = 7.730e-38 Identity = 99/184 (53.80%), Postives = 124/184 (67.39%), Query Frame = 1
Query: 1390 IAAVKTVSTPYVPPGGR--MKVESAPQND---------GESMGPLWPSGLNRKPVRVSQKARASDGGSSP-SRSSPFRVATAVSGGKSAYGVSIEEYSEKMSRGDVEACTALITNFPTSVPPGQREGLLRPFIDKGALVVWPRPDEALATFATSSLARQAISSKSIPSTALTVELLSNAKQEKR 1905
+ A K + YVPPG R + E A D G+ MGPLW S R PVRVSQ+ R SD +SP SR +P RVA VSGG SAYG +I EYSE+MSR VEACTA+++NFP ++PPGQR+ +L+ + G LVVWPRPDEAL TFAT +LARQA+S+++ + L VELLS A+ EKR
Sbjct: 347 LPAFKPPAARYVPPGRRKALDAELAAAADSGSSGGAAAGDGMGPLWTS---RAPVRVSQRERPSDRDASPASRPAPARVAHVVSGGMSAYGTNISEYSEEMSREQVEACTAVVSNFPVALPPGQRDSMLQSLVSLGGLVVWPRPDEALVTFATPALARQAVSARNNRDSVLLVELLSLARLEKR 527
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_005720.1 |
| Exons | 4 |
| Model size | 2488 |
| Cds size | 2031 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig680.14719.1 >prot_H-paniculata_contig680.14719.1 ID=prot_H-paniculata_contig680.14719.1|Name=mRNA_H-paniculata_contig680.14719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=677bp
MSSQKATRLGRDVYVPPNARGGRGKPTCQQDMPQVAARTSDTNTSSTVPI ANIRVRDKGNVKGTVESRQCVQAKRGAVDMGRDIGEGLHLGTSSDGNAND AINTELVAGQSALAVETAAAPTDLDCTRSPNVVYIDGRNKSGKDPPPAPI CDINTNCSRRTDTERSGGAVNTAGSNDGDASREVVATESSIDRGGSTRRK PRKAWSQYVPPTRRGGGNNAGATTIVANLSCATTMRAPVTSVMNYQSPTR LGDVAGTAEKPTKRSPEEVSQRISSSELHAAAKKIIQVPNPEYERERETH GGITPEPRSNHGSTDEIAVKLKALSVTSASIGQHSHTEGETTVNAIETGD MEAIAYAAVDGDLTAAGVQCERSGGPISDKAAAVSPAAAAEAAETKADVG IGGASAEEKRGEIPAQEENTRISAKIAAVKTVSTPYVPPGGRMKVESAPQ NDGESMGPLWPSGLNRKPVRVSQKARASDGGSSPSRSSPFRVATAVSGGK SAYGVSIEEYSEKMSRGDVEACTALITNFPTSVPPGQREGLLRPFIDKGA LVVWPRPDEALATFATSSLARQAISSKSIPSTALTVELLSNAKQEKRRAL LRVELARPGRPPSDASSASRLALGALGIRKSKETRAGTPASARKGLGATA SGKSGGMRRRGSEPQETVESTDSWDM* back to topmRNA from alignment at H-paniculata_contig680:27291..31213+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig680.14719.1 ID=mRNA_H-paniculata_contig680.14719.1|Name=mRNA_H-paniculata_contig680.14719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3923bp|location=Sequence derived from alignment at H-paniculata_contig680:27291..31213+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TGAGGCCTGACACCCACCGCATCAGCTACTAGACTAGTATTGCGTACACG
TGTGTATGTCGTGCTGCGTACACGTGTATGTGAATAATTCCACATCCCTG
TGGTAACTGCCGCTATGTCGAGTCAAAAAGCGACTAGACTCGGCCGTGAC
GTATATGTACCGCCCAACGCGAGAGGCGGGAGGGGGAAACCAACCTGCCA
GCAGGATATGCCGCAAGTTGCAGCTCGGACGAGCGACACCAACACTAGCA
GTACTGTCCCCATCGCAAACATACGAGTGAGAGACAAAGGAAATGTGAAG
GGTACAGTTGAATCTCGGCAGTGTGTGCAGGCGAAGAGAGGCGCCGTAGA
CATGGGGCGTGATATCGGCGAGGGACTTCATTTGGGCACATCCAGCGACG
GCAACGCGAATGATGCCATTAATACGGAGCTCGTAGCTGGGCAATCTGCA
TTGGCGGTAGAGACAGCAGCAGCACCAACTGATCTAGACTGTACCAGAAG
CCCAAACGTCGTGTATATAGATGGGCGAAATAAGAGCGGGAAGGACCCTC
CCCCAGCACCAATTTGTGACATTAACACCAACTGCTCTAGGCGGACTGAC
ACTGAGAGGAGCGGGGGAGCCGTCAACACCGCAGGCTCGAACGATGGGGA
CGCGAGTAGAGAGGTGGTCGCAACAGAGAGCAGCATCGATAGGGGAGGGA
GCACGCGAAGGAAGCCGAGGAAAGCTTGGTCGCAGTACGTGCCTCCCACT
CGCAGGGGTGGAGGGAACAATGCAGGCGCTACAACAATCGTCGCAAATCT
CTCTTGTGCAACAACGATGAGGGCACCAGTGACATCCGTAATGAACTATC
AATCACCTACACGACTAGGAGATGTAGCAGGAACAGCAGAAAAACCCACA
AAACGATCACCAGAAGAAGTTTCTCAGCGGATATCCTCCTCAGAACTACA
CGCCGCCGCAAAAAAAATCATACAGGTGCCAAACCCTGAGTATGAGCGTG
AGCGTGAGACACATGGTGGTATAACTCCTGAGCCAAGATCAAACCATGGC
TCCACCGATGAAATAGCAGTCAAGCTGAAAGCTTTATCGGTCACGTCTGC
AAGTATCGGTCAGCACTCACATACAGAAGGCGAGACTACTGTTAATGCCA
TTGAAACAGGGGACATGGAGGCTATTGCTTATGCTGCGGTTGACGGAGAT
TTGACAGCAGCTGGCGTGCAGTGCGAAAGATCGGGTGGGCCGATCTCGGA
TAAAGCCGCTGCTGTATCACCTGCAGCAGCAGCTGAAGCAGCCGAAACCA
AGGCTGACGTTGGCATCGGGGGTGCCAGTGCTGAAGAAAAACGTGGAGAA
ATACCTGCGCAAGAGGAAAATACTAGAATCTCCGCGAAAATAGCAGCAGT
GAAGACTGTAAGCACTCCTTATGTTCCTCCAGGTGGACGAATGAAGGTAG
AATCAGCGCCTCAGAACGACGGGGAATCAATGGGGCCCCTTTGGCCATCT
GGCCTTAATCGAAAACCGGTTCGCGTGAGCCAAAAAGCGCGTGCGTCGGA
TGGAGGATCAAGTCCATCCCGCTCTTCCCCGTTCCGTGTTGCAACTGCGG
TAAGTGGGGGCAAGTCTGCTTACGGAGTCAGCATCGAGGAGTACTCTGGT
GAGCAGGACTTACGTCGTGTGACGGTTACACACAACTTGCTAGGAAGGTG
TTTACCTCCAGAGTGGAGTTATCTGTAGTGACCTAGCAAGTCCGACAGTC
AATTAATTGGCCGTTGTGTGTTTTGTTCTAATAGCTTGTCGTTCAGGCGA
CAGATGGCAGCCGGAACAAACCCTGTCCTCTGATGAATTCATAGATTGGT
GCATAACTCATAACCGACCGGGGGACTTCTACTCGTTTGGGATAATGTGA
GCCAGAAAATGAAGCATCCCTGATTTATACAGGATATATCATTAGTTTCC
AATACCCTTGCTGTTAGCATCGTCCTTTGACTGTTTTTCAACGTACCCAC
CCGCCCTGCCATCAACCTCACCCCGTCACCATCTCATATCGCTGCCAATT
TTGGACAGAAAAAATGTCTCGGGGTGACGTGGAGGCCTGTACGGCGCTTA
TCACTAATTTCCCTACGTCAGTCCCGCCCGGCCAACGCGAAGGATTGCTT
CGACCGTTCATCGATAAGGGCGCCCTTGTCGTGTGAGTCTTGGCTGCGTT
TTGTCCTGCGATGGGGGATAGATGCTCTCTTTTTTTCATGAGGAACCCTC
TCGTTGAGGTTGAAAAGCGTTGTTTATCACCTGAAGGCAAGCTAACGGCT
TCTCCACGTACATTGCGGAACAAGAAATTAGGAAACCACAAAATTGACGC
TGTCGAGATGTACTGATAGCCATCCTCAAGAGATGGCTCCAAATTTGACT
CTTGTGGTGGGACGAGTCCTGCTGTCGCCTTTGGTGCTGCTCCGGTCATT
GTATATGCAGGAGCAATCGTCACGCCTGGTCAGTTATTATCTACTGTCCA
TATCAGGATATTCATATTGCTGACCGTATGGTAGGTCAACCGTAAATCAC
TCAAATGTGCAACATGACTGGAAGAGGTGGGGATTGCGCTTATTGGAATC
TGTTCACTGCAGTGGAAGTATAAAATCCAATGCAGTATAGCTCGTCAGAA
TCCAGTCGCGCGTCTCGTACTGTGCACCGTCGGATTCATTCAACATACCC
CAGTCCACGATTTCATCCATGACTCGCCTCCGTGAACTTGACGGCAAGAA
ATTGAAAGTTCTACTTGTACACACAAAATTTTCGATGGGTCATTTTTGAA
AATTCCAGTTGGCCGCGCCCGGACGAGGCGCTTGCGACATTCGCGACATC
ATCGTTGGCGCGTCAGGCGATCTCCTCCAAGAGTATCCCTTCAACGGCCC
TGACGGTGGAGCTGTTGTCGAACGCGAAGCAAGAGAAGCGACGGGCGTTG
CTAAGAGGTACATGCACCGACGCTTGACACTAGCGTAAAAATTGGTTGAA
ATATGCGTGGTACGTGATCGCTGCCCGTCCTATAAAGCAATTCTTACCGT
GCAGCCGAGACTGTGTGGCGTTTTCTTAATGGTCATATTTGCAGTACCCC
AGCAAGTTACTGATAGATTCCCCACGGGTTAGCAACGCGATTACGAATAC
CTATACGCTGATCCACCAGCCAGGGCGGCGCAATTCAAATATTGCAGCTC
AAGAATATTCCTTGCCCTCGGCTTCTCCCTTTCCTGACCGGAATTATTCG
TATTCCACAACCAGAGTGTTGGTGTCCGGTGCTAACATCCCCCCTTGCGT
CTACTGCGGAATCCCCGTTTCTTGTTTTGTCCCTCGAACGCCCCCCCACA
CAACAGTTGAGTTGGCCCGTCCAGGTCGCCCTCCGTCGGACGCCTCTAGT
GCTTCAAGGCTTGCCTTGGGTGCTCTCGGGATCCGAAAGTCAAAGGAGAC
GCGGGCGGGTACACCAGCGTCCGCCCGGAAGGGGTTGGGAGCTACTGCCT
CTGGGAAGAGCGGTGGTATGAGGAGACGCGGCTCTGAACCGCAGGAGACG
GTTGAGAGTACAGACTCGTGGGACATGTAAATATTCCAGAGTCTTCCACT
GTAATGGCGAGGGAATTTTAGGCTGCCAAGTAGTCGTGTTTTCACAGTGT
GGAATTTGTGCGCATTACCTTTTGACGTACAGGCGTATATAGTTGTGTGG
TAAGTCTCCCGCAGTAGTAGAAGATTCGTCTTTGACATTTTACCCAACGT
GATGAGCATATGACTTTTGCACCAACTATTTTTCGCTGAATTGAACATTT
TATAGAAGCAGGTAAAGTGCGGAACACGATCACGAACCTGAAAACGATGT
ATCAAATGTGCTCTTCTGGTGCTTCCCTTTTCGACATGATCAATTTTTTT
TTCAACTCCCCGAATGCTGAGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig680:27291..31213+ >mRNA_H-paniculata_contig680.14719.1 ID=mRNA_H-paniculata_contig680.14719.1|Name=mRNA_H-paniculata_contig680.14719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4062bp|location=Sequence derived from alignment at H-paniculata_contig680:27291..31213+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCGAGTCAAAAAGCGACTAGACTCGGCCGTGACGTATATGTACCGCC CAACGCGAGAGGCGGGAGGGGGAAACCAACCTGCCAGCAGGATATGCCGC AAGTTGCAGCTCGGACGAGCGACACCAACACTAGCAGTACTGTCCCCATC GCAAACATACGAGTGAGAGACAAAGGAAATGTGAAGGGTACAGTTGAATC TCGGCAGTGTGTGCAGGCGAAGAGAGGCGCCGTAGACATGGGGCGTGATA TCGGCGAGGGACTTCATTTGGGCACATCCAGCGACGGCAACGCGAATGAT GCCATTAATACGGAGCTCGTAGCTGGGCAATCTGCATTGGCGGTAGAGAC AGCAGCAGCACCAACTGATCTAGACTGTACCAGAAGCCCAAACGTCGTGT ATATAGATGGGCGAAATAAGAGCGGGAAGGACCCTCCCCCAGCACCAATT TGTGACATTAACACCAACTGCTCTAGGCGGACTGACACTGAGAGGAGCGG GGGAGCCGTCAACACCGCAGGCTCGAACGATGGGGACGCGAGTAGAGAGG TGGTCGCAACAGAGAGCAGCATCGATAGGGGAGGGAGCACGCGAAGGAAG CCGAGGAAAGCTTGGTCGCAGTACGTGCCTCCCACTCGCAGGGGTGGAGG GAACAATGCAGGCGCTACAACAATCGTCGCAAATCTCTCTTGTGCAACAA CGATGAGGGCACCAGTGACATCCGTAATGAACTATCAATCACCTACACGA CTAGGAGATGTAGCAGGAACAGCAGAAAAACCCACAAAACGATCACCAGA AGAAGTTTCTCAGCGGATATCCTCCTCAGAACTACACGCCGCCGCAAAAA AAATCATACAGGTGCCAAACCCTGAGTATGAGCGTGAGCGTGAGACACAT GGTGGTATAACTCCTGAGCCAAGATCAAACCATGGCTCCACCGATGAAAT AGCAGTCAAGCTGAAAGCTTTATCGGTCACGTCTGCAAGTATCGGTCAGC ACTCACATACAGAAGGCGAGACTACTGTTAATGCCATTGAAACAGGGGAC ATGGAGGCTATTGCTTATGCTGCGGTTGACGGAGATTTGACAGCAGCTGG CGTGCAGTGCGAAAGATCGGGTGGGCCGATCTCGGATAAAGCCGCTGCTG TATCACCTGCAGCAGCAGCTGAAGCAGCCGAAACCAAGGCTGACGTTGGC ATCGGGGGTGCCAGTGCTGAAGAAAAACGTGGAGAAATACCTGCGCAAGA GGAAAATACTAGAATCTCCGCGAAAATAGCAGCAGTGAAGACTGTAAGCA CTCCTTATGTTCCTCCAGGTGGACGAATGAAGGTAGAATCAGCGCCTCAG AACGACGGGGAATCAATGGGGCCCCTTTGGCCATCTGGCCTTAATCGAAA ACCGGTTCGCGTGAGCCAAAAAGCGCGTGCGTCGGATGGAGGATCAAGTC CATCCCGCTCTTCCCCGTTCCGTGTTGCAACTGCGGTAAGTGGGGGCAAG TCTGCTTACGGAGTCAGCATCGAGGAGTACTCTGATGTCGAGTCAAAAAG CGACTAGACTCGGCCGTGACGTATATGTACCGCCCAACGCGAGAGGCGGG AGGGGGAAACCAACCTGCCAGCAGGATATGCCGCAAGTTGCAGCTCGGAC GAGCGACACCAACACTAGCAGTACTGTCCCCATCGCAAACATACGAGTGA GAGACAAAGGAAATGTGAAGGGTACAGTTGAATCTCGGCAGTGTGTGCAG GCGAAGAGAGGCGCCGTAGACATGGGGCGTGATATCGGCGAGGGACTTCA TTTGGGCACATCCAGCGACGGCAACGCGAATGATGCCATTAATACGGAGC TCGTAGCTGGGCAATCTGCATTGGCGGTAGAGACAGCAGCAGCACCAACT GATCTAGACTGTACCAGAAGCCCAAACGTCGTGTATATAGATGGGCGAAA TAAGAGCGGGAAGGACCCTCCCCCAGCACCAATTTGTGACATTAACACCA ACTGCTCTAGGCGGACTGACACTGAGAGGAGCGGGGGAGCCGTCAACACC GCAGGCTCGAACGATGGGGACGCGAGTAGAGAGGTGGTCGCAACAGAGAG CAGCATCGATAGGGGAGGGAGCACGCGAAGGAAGCCGAGGAAAGCTTGGT CGCAGTACGTGCCTCCCACTCGCAGGGGTGGAGGGAACAATGCAGGCGCT ACAACAATCGTCGCAAATCTCTCTTGTGCAACAACGATGAGGGCACCAGT GACATCCGTAATGAACTATCAATCACCTACACGACTAGGAGATGTAGCAG GAACAGCAGAAAAACCCACAAAACGATCACCAGAAGAAGTTTCTCAGCGG ATATCCTCCTCAGAACTACACGCCGCCGCAAAAAAAATCATACAGGTGCC AAACCCTGAGTATGAGCGTGAGCGTGAGACACATGGTGGTATAACTCCTG AGCCAAGATCAAACCATGGCTCCACCGATGAAATAGCAGTCAAGCTGAAA GCTTTATCGGTCACGTCTGCAAGTATCGGTCAGCACTCACATACAGAAGG CGAGACTACTGTTAATGCCATTGAAACAGGGGACATGGAGGCTATTGCTT ATGCTGCGGTTGACGGAGATTTGACAGCAGCTGGCGTGCAGTGCGAAAGA TCGGGTGGGCCGATCTCGGATAAAGCCGCTGCTGTATCACCTGCAGCAGC AGCTGAAGCAGCCGAAACCAAGGCTGACGTTGGCATCGGGGGTGCCAGTG CTGAAGAAAAACGTGGAGAAATACCTGCGCAAGAGGAAAATACTAGAATC TCCGCGAAAATAGCAGCAGTGAAGACTGTAAGCACTCCTTATGTTCCTCC AGGTGGACGAATGAAGGTAGAATCAGCGCCTCAGAACGACGGGGAATCAA TGGGGCCCCTTTGGCCATCTGGCCTTAATCGAAAACCGGTTCGCGTGAGC CAAAAAGCGCGTGCGTCGGATGGAGGATCAAGTCCATCCCGCTCTTCCCC GTTCCGTGTTGCAACTGCGGTAAGTGGGGGCAAGTCTGCTTACGGAGTCA GCATCGAGGAGTACTCTGAAAAAATGTCTCGGGGTGACGTGGAGGCCTGT ACGGCGCTTATCACTAATTTCCCTACGTCAGTCCCGCCCGGCCAACGCGA AGGATTGCTTCGACCGTTCATCGATAAGGGCGCCCTTGTCGTAAAAAATG TCTCGGGGTGACGTGGAGGCCTGTACGGCGCTTATCACTAATTTCCCTAC GTCAGTCCCGCCCGGCCAACGCGAAGGATTGCTTCGACCGTTCATCGATA AGGGCGCCCTTGTCGTTTGGCCGCGCCCGGACGAGGCGCTTGCGACATTC GCGACATCATCGTTGGCGCGTCAGGCGATCTCCTCCAAGAGTATCCCTTC AACGGCCCTGACGGTGGAGCTGTTGTCGAACGCGAAGCAAGAGAAGCGAC GGGCGTTGCTAAGAGTTGGCCGCGCCCGGACGAGGCGCTTGCGACATTCG CGACATCATCGTTGGCGCGTCAGGCGATCTCCTCCAAGAGTATCCCTTCA ACGGCCCTGACGGTGGAGCTGTTGTCGAACGCGAAGCAAGAGAAGCGACG GGCGTTGCTAAGAGTTGAGTTGGCCCGTCCAGGTCGCCCTCCGTCGGACG CCTCTAGTGCTTCAAGGCTTGCCTTGGGTGCTCTCGGGATCCGAAAGTCA AAGGAGACGCGGGCGGGTACACCAGCGTCCGCCCGGAAGGGGTTGGGAGC TACTGCCTCTGGGAAGAGCGGTGGTATGAGGAGACGCGGCTCTGAACCGC AGGAGACGGTTGAGAGTACAGACTCGTGGGACATGTAATTGAGTTGGCCC GTCCAGGTCGCCCTCCGTCGGACGCCTCTAGTGCTTCAAGGCTTGCCTTG GGTGCTCTCGGGATCCGAAAGTCAAAGGAGACGCGGGCGGGTACACCAGC GTCCGCCCGGAAGGGGTTGGGAGCTACTGCCTCTGGGAAGAGCGGTGGTA TGAGGAGACGCGGCTCTGAACCGCAGGAGACGGTTGAGAGTACAGACTCG TGGGACATGTAA back to top
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