mRNA_H-paniculata_contig67924.14707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 177 bits (449), Expect = 2.670e-51 Identity = 90/206 (43.69%), Postives = 130/206 (63.11%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSR 621
YR +VG+ MY++T TRPDIA AV + A E + + KRI +YL T DLG+ F G + G +G + DA+WA ++ R+STTGY+F LNG AISW S++Q V SSTE EY+A +E V+LR+L +G C G+TT F+DN I L+K H RTKHI +++H +RE + + V+ L++ T + + D T+ L+R
Sbjct: 94 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIG-YADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 174 bits (441), Expect = 6.880e-51 Identity = 86/212 (40.57%), Postives = 133/212 (62.74%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRL 639
Y+ VGS +Y+ST TRPDIA+AV AS DP ++ ++ KRI RYL+ LG+ + + +G + DADWA ++DRKS +GY+FK++G A+SW S+KQ V S+ E EY+A +E V++R+L + G+T ++EDN SAI +++ H R KHI ++ H IR+ + G + LK +T D + D+ T+GL++V F +L
Sbjct: 27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECIG-YSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKFIKL 237
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 172 bits (436), Expect = 3.180e-50 Identity = 86/213 (40.38%), Postives = 132/213 (61.97%), Query Frame = 1
Query: 7 RGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRLIN 645
R +VG+ MY++T TRP+IAYAV + A E + + KRI +YL T D+G+ F G G +G + DA+WA ++ R+STTGY+F LNG AISW S++Q V SSTE EY+A +E V+LR+L +G+ +G+TT+++DN I L+K H RTKHI +++H +RE + + L++ T + + D T+ L+R + +N
Sbjct: 23 RELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGELVG-YADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKALARDKHNKFVN 234
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: R7QDG7_CHOCR (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QDG7_CHOCR) HSP 1 Score: 172 bits (435), Expect = 7.570e-50 Identity = 88/217 (40.55%), Postives = 127/217 (58.53%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSI-GFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRLINLL 651
YR VGS MY+ GTRPD+AYA+ + + +PC ++ KR+ RY+ +LGI F KS L F DADWA + RKST+GY+FK G AISWSSRKQ +V S+ E EY+A E KE +LR++ + G + + DN I+ ++ + R KH+ V++H +R+ I+ V++L H +T DI T+ L RV FQ+ + LL
Sbjct: 31 YREAVGSLMYLMVGTRPDLAYAIGKLSQHSANPCESHWAGVKRVMRYVQGTRNLGIVFDNKSKSPELFGFSDADWAGCSDSRKSTSGYVFKFCGGAISWSSRKQTVVATSTCEAEYIALCEACKEATWLRQVVADVLGLDSDPTIVMGCDNAGTISYAQNESVNRRNKHVDVKYHYVRDAIKRNVISLSHCRTTSMPADILTKALGRVLFQKFVELL 247
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 175 bits (444), Expect = 1.590e-49 Identity = 89/206 (43.20%), Postives = 129/206 (62.62%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSR 621
YR +VG+ MY++T TRPDIA AV + A E + + KRI +YL T DLG+ F G + G +G + DA WA ++ R+STTGY+F LNG AISW S++Q V SSTE EY+A +E V+LR+L +G C +TT+F+DN I L+K H RTKHI +++H +RE + + V+ L++ T + + D T+ L+R
Sbjct: 190 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIG-YADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE) HSP 1 Score: 171 bits (433), Expect = 3.410e-49 Identity = 87/213 (40.85%), Postives = 123/213 (57.75%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIG-FGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRL 639
YR VG MY+ TRPD+A AV + DPC + KR+ RYL P+ G+ F + G + + DADWA +E R+ST+GY+F +NG ISW S+KQ V SSTE EY+A E KE V+L+ G +G + +FEDN +I L+K H RTKHI +R+H +RE + G + L++ T D L D+ T+ ++ V F+ L
Sbjct: 37 YRSAVGGIMYLMVATRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEFT-REEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADMMTKPIAAVQFESL 248
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 168 bits (426), Expect = 6.770e-49 Identity = 86/192 (44.79%), Postives = 122/192 (63.54%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQT 579
YR +VG+ MY++T TRPDIA AV + A E + KRI +YL T DLG+ F G + G +G + DA+WA ++ R+STTGY+F LNG AISW S++Q V SSTE EY+A +E V+LR+L +G C G+TT+F+DN I L+K H RTKHI +++H +RE + + V+ L++ T
Sbjct: 35 YRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGELIG-YADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPT 225
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203) HSP 1 Score: 169 bits (428), Expect = 9.050e-49 Identity = 91/216 (42.13%), Postives = 129/216 (59.72%), Query Frame = 1
Query: 1 EYRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRLINL 648
EYR +VGS + +ST TRPD+A+AV + A + P E + K I RYL +LG+ + KSN L F D+DWA +DRKST+GYIF N ISW S+KQ V S+ + EY+A +E +++R L +I C T +FEDN S I+L+K H R KHI +R+H RE + + L + Q+ D + D+ T+GLS+V F +L+NL
Sbjct: 36 EYRSIVGSLINLSTRTRPDLAFAVGELARYCDAPGSEHWVALKIILRYLKNTKNLGLCYR-KSNKGELVGFSDSDWAGDHDDRKSTSGYIFLYNEGPISWKSQKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 170 bits (431), Expect = 2.110e-48 Identity = 91/216 (42.13%), Postives = 138/216 (63.89%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRLINLL 651
Y+ ++GS MY+ T TRPDI YAV + ME P + KRI RY+ D G+ F + +G G + D+D+A ++DRKST+G+IF LN AISWSS+KQ +VT SSTE EYVAA + ++LR++ +G +G TT++ DNIS I LS+ H R+KHI VR+H +R+ + + L++ ++G+Q+ DI T+ L + F++L ++L
Sbjct: 100 YKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 174 bits (440), Expect = 3.370e-48 Identity = 93/213 (43.66%), Postives = 132/213 (61.97%), Query Frame = 1
Query: 4 YRGMVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNGH-GLGRFVDADWAEGVEDRKSTTGYIFKLNGDAISWSSRKQHLVTWSSTEVEYVAAGEVGKETVYLRELQGSIGFGCRGSTTLFEDNISAINLSKGSGAHCRTKHIGVRWHGIREWIREGVLALKHVQTGDQLTDISTRGLSRVTFQRL 639
Y+ +VGS MY+ T TRPD+ + V + M +P +T KRI RYL D GI + + G L + D+D+A ++D KST+GY+F L+G A++WSSRKQ +VT SSTE EYVAA + ++++ + G IGF TLF DN S I LSK + H ++KHI VR+H +RE +EG++ L H T +QL DI T+ L +FQR+
Sbjct: 270 YKQIVGSLMYL-TATRPDLMFVVCLISRFMANPTELHLATAKRIMRYLKGTLDFGIWYRRERKGSLSLLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRI 481 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig67924.14707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig67924.14707.1 >prot_H-paniculata_contig67924.14707.1 ID=prot_H-paniculata_contig67924.14707.1|Name=mRNA_H-paniculata_contig67924.14707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp MVGSPMYVSTGTRPDIAYAVHQAASRMEDPCREDFSTCKRIFRYLSTVPDback to top mRNA from alignment at H-paniculata_contig67924:52..708- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig67924.14707.1 ID=mRNA_H-paniculata_contig67924.14707.1|Name=mRNA_H-paniculata_contig67924.14707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=657bp|location=Sequence derived from alignment at H-paniculata_contig67924:52..708- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig67924:52..708- >mRNA_H-paniculata_contig67924.14707.1 ID=mRNA_H-paniculata_contig67924.14707.1|Name=mRNA_H-paniculata_contig67924.14707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig67924:52..708- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |