mRNA_H-paniculata_contig66985.14592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig66985.14592.1
Unique NamemRNA_H-paniculata_contig66985.14592.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig66985.14592.1 vs. uniprot
Match: A0A7S3JUR3_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUR3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.300e-6
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    7 CPKCEVAWVDGKDDDAMALGC--SMCELWVHAACEGVEAE 120
            CP C  AW    D+DAM L C  S C LWVHAACEG++AE
Sbjct:  259 CPICHHAW--NNDEDAMMLKCDGSSCRLWVHAACEGLDAE 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66985.14592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3JUR3_9STRA9.300e-660.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66985contigH-paniculata_contig66985:91..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.763018-CDS-H-paniculata_contig66985:90..2131622930792.763018-CDS-H-paniculata_contig66985:90..213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66985 91..213 +
1691481454.4970493-CDS-H-paniculata_contig66985:90..2131691481454.4970493-CDS-H-paniculata_contig66985:90..213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66985 91..213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66985.14592.1prot_H-paniculata_contig66985.14592.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig66985 91..213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig66985.14592.1

>prot_H-paniculata_contig66985.14592.1 ID=prot_H-paniculata_contig66985.14592.1|Name=mRNA_H-paniculata_contig66985.14592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
SYCPKCEVAWVDGKDDDAMALGCSMCELWVHAACEGVEAEV
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mRNA from alignment at H-paniculata_contig66985:91..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig66985.14592.1 ID=mRNA_H-paniculata_contig66985.14592.1|Name=mRNA_H-paniculata_contig66985.14592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig66985:91..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTATTGCCCCAAATGCGAAGTGGCGTGGGTGGACGGGAAGGACGATGA
CGCCATGGCCTTGGGGTGCTCCATGTGCGAACTTTGGGTGCATGCGGCCT
GCGAAGGGGTGGAGGCTGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig66985:91..213+

>mRNA_H-paniculata_contig66985.14592.1 ID=mRNA_H-paniculata_contig66985.14592.1|Name=mRNA_H-paniculata_contig66985.14592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig66985:91..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTATTGCCCCAAATGCGAAGTGGCGTGGGTGGACGGGAAGGACGATGA
CGCCATGGCCTTGGGGTGCTCCATGTGCGAACTTTGGGTGCATGCGGCCT
GCGAAGGGGTGGAGGCTGAGGTGAGCTATTGCCCCAAATGCGAAGTGGCG
TGGGTGGACGGGAAGGACGATGACGCCATGGCCTTGGGGTGCTCCATGTG
CGAACTTTGGGTGCATGCGGCCTGCGAAGGGGTGGAGGCTGAGGTG
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