mRNA_H-paniculata_contig6639.14515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI) HSP 1 Score: 268 bits (685), Expect = 2.660e-81 Identity = 171/389 (43.96%), Postives = 227/389 (58.35%), Query Frame = 3
Query: 129 LFVATANGVAYEVSSCADMLLVDDSTVTAITVTSSEITCVEYTRFRVRNAMMISATVPQVTFSNIALKVLGELTVEPDVLFTGVNEQEKRGAVLHISDGATATFMGKAEFNENSNAQRELPDLPCEDVPEWPLSSTSFYNTRSYVSNDCTIRGWVPLNGGCIYNRGTLVFEDEARFDENYATTERDSGSNG--GAIANTATGTILFKGKLTMLNSYAESSFAGGKGYGGAIYNRGDVVVEGEAFFAENSGSEGGAIHNRRTGSLVFNSLATFFDNGASDYRGGAVFNMGGQVSFNAGSMFKSNSASSNGEGGSXXXXXXXXXXXXXXXXXXXXXXRSGGSCGAMCTS-----SRTGATTYIFPSDPADISFEGNSSEDGGECDDI-NGE 1271
L A A V Y V++CAD+ VDD+ VT++T+ +S C EYTRFRVRNAM + ATVP V F N +LKVLGELTVEPDV+F GV +Q K G VL +++GATATFMG +EF++NS A +++ + C D T SY+ GG I+N+GTL FE +A F+ N TE DS G GAI+NT +GTILFK KLTM ++ A+ F +G GGAIYNRG++VVEGE+ F+ N+ S+GG I+ G++ FN ATF +N A D GG + N GG V+ NAGS+F+ N AS +G+GG + GA+ TS + A+ FP D FE NS+E C D+ NG+
Sbjct: 12 LLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGD------GCTRIGRGLSYIVK----------KGGAIHNKGTLTFEGDATFERNEVHTE-DSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFF---EGIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFMGGAIYTSDGDEENGEPASVTTFPDDTV---FEDNSAE---HCPDVHNGD 374
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI) HSP 1 Score: 262 bits (669), Expect = 6.320e-79 Identity = 153/323 (47.37%), Postives = 203/323 (62.85%), Query Frame = 3
Query: 96 MWPFQLLATCALFVATANGVAYEVSSCADMLLVDDSTVTAITVTSSEITCVEYTRFRVRNAMMISATVPQVTFSNIALKVLGELTVEPDVLFTGVNEQEKRGAVLHISDGATATFMGKAEFNENSNAQRELPDLPCEDVPEWPLSSTSFYNTRSYVSNDCTIRGWVPLNGGCIYNRGTLVFEDEARFDENYATTERDSGSNG--GAIANTATGTILFKGKLTMLNSYAESSFAGGKGYGGAIYNRGDVVVEGEAFFAENSGSEGGAIHNRRTGSLVFNSLATFFDNGASDYRGGAVFNMGGQVSFNAGSMFKSNSASSNGEGG 1058
M P L L A A V Y V++CAD+ VDD+ VT +T+ +S C EYTRF VRN+M + ATV V F N +LKVLGELTVEPDV F GV +Q K G VL +++GAT+TFMG +EF++NS A ++L + C D E S+ V GG I+N+GTL FE +A F+ N TE DS G GAI+NT +GTI FK KLTM ++ AE F +G GGAIYNRG+++V+GE+ F+ N+ S+GG I+ G + FNS+ATF +N A + RGG + N GG V+ NAGS+F+ N AS +G+GG
Sbjct: 1 MKPCSLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSY----------------VVKKGGAIHNKGTLTFEGDATFERNAVHTE-DSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFF---EGLGGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGG 303
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE) HSP 1 Score: 199 bits (507), Expect = 3.780e-55 Identity = 120/301 (39.87%), Postives = 164/301 (54.49%), Query Frame = 3
Query: 156 AYEVSSCADMLLVDDSTVTAITVTSSEITCVEYTRFRVRNAMMISATVPQVTFSNIALKVLGELTVEPDVLFTGVNEQEKRGAVLHISDGATATFMGKAEFNENSNAQRELPDLPCEDVPEWPLSSTSFYNTRSYVSNDCTIRGWVPLNGGCIYNRGTLVFEDEARFDENYATTERDSGSNGGAIANTATGTILFKGKLTMLNSYAESSFAGGKGYGGAIYNRGDVVVEGEAFFAENSGSEGGAIHNRRTGSLVFNSLATFFDNGASDYRGGAVFNMGGQVSFNAGSMFKSNSASSNGEGG 1058
A V SC + +D T +T+T ++ C EYTR +R+ M++ ++V +VTFSN ALKV G LTVEPDV+FTGV+ EK G VL + GA F G AEF++NS + + E++ GG I+ +G+L FE +A F N GGAI+ G+I F GKLTM ++ A+ F G +G GAI+NRGD+VV+GEA F N G GGAI + +LVFN TF N D GG + N+GG V+ NAGS+F A ++G+GG
Sbjct: 23 AVNVGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGVSLVEKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILR---------------------------KGGAIHTKGSLTFEKDATFSGNLNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQG--GAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGG 294
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI) HSP 1 Score: 152 bits (383), Expect = 1.240e-38 Identity = 91/209 (43.54%), Postives = 129/209 (61.72%), Query Frame = 3
Query: 441 MGKAEFNENSNAQRELPDLPCEDVPEWPLSSTSFYNTRSYVSNDCTIRG--WVPLNGGCIYNRGTLVFEDEARFDENYATTERDSG-SNGGAIANTATGTILFKGKLTMLNSYAESSFAGGKGYGGAIYNRGDVVVEGEAFFAENSGSEGGAIHNRRTGSLVFNSLATFFDNGASDYRGGAVFNMGGQVSFNAGSMFKSNSASSNGEGG 1058
MG +EF+ NS A ++ + C D TRS RG ++ GG I+N+GTL F+ +A F+ N A TE + NGGAI+NT +GTILFK KLTM ++ A+++FAG GGAIYNRG+++VEG + F+ N + GG IH G++ FN +ATF +N A + GG + N GG V+ NAGS+F+ N AS++G+GG
Sbjct: 1 MGTSEFSNNSVAVKQFGRISCGDGC-----------TRSE-------RGLTYIVKKGGAIHNKGTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAG---LGGAIYNRGEIIVEGASLFSLNHAAAGGGIHQTSIGTMTFNGMATFSENFAGEPTGGGLTNNGGVVNINAGSLFEHNWASASGDGG 188
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.240e-20 Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 3
Query: 798 GYGGAIYNRGDVVVEGEAFFAENSGSEGGAIHNRRTGSLVFNSLATFFDNGASDYRGGAVFNMGGQVSFNAGSMFKSNSASSNGEGGSXXXXXXXXXXXXXXXXXXXXXXRSGGSCGAMCTSSRTGATTYIFPSDPADISFEGNSSEDGGECDDI-NGE 1271
G GGAIYNRG++ VEGE+ F+EN S+GG I+ G + FNS+ATFF N A + RGG + N GG V+ NAGS+F+ N A++N +GG GA+ T A+ FP D FE NS++ C D+ NG+
Sbjct: 12 GLGGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVTLMGPTTFRENGAWWGGAIYTDDGYPASVTTFPDDTV---FEDNSAD--AYCPDVHNGD 165
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 7.480e-20 Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 3
Query: 96 MWPFQLLATCALFVATANGVAYEVSSCADMLLVDDSTVTAITVTSSEITCVEYTRFRVRNAMMISATVPQVTFSNIALKVLGELTVEPDVLFTGVNEQEKRGAVLHI 416
M P L +L A V Y V++CAD+ VDD+ VT +T+ ++ C EYTRFRVRN+M + ATV V F N +LKVLGELTVEPDV F GV +Q G +
Sbjct: 1 MKPVSLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEGTTPSV 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6639.14515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6639.14515.1 >prot_H-paniculata_contig6639.14515.1 ID=prot_H-paniculata_contig6639.14515.1|Name=mRNA_H-paniculata_contig6639.14515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=405bp MKAVGSAMMWPFQLLATCALFVATANGVAYEVSSCADMLLVDDSTVTAITback to top mRNA from alignment at H-paniculata_contig6639:1770..10709- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6639.14515.1 ID=mRNA_H-paniculata_contig6639.14515.1|Name=mRNA_H-paniculata_contig6639.14515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8940bp|location=Sequence derived from alignment at H-paniculata_contig6639:1770..10709- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6639:1770..10709- >mRNA_H-paniculata_contig6639.14515.1 ID=mRNA_H-paniculata_contig6639.14515.1|Name=mRNA_H-paniculata_contig6639.14515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at H-paniculata_contig6639:1770..10709- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |