mRNA_H-paniculata_contig65763.14440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI) HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12 Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
WN L+DFL+ GL RS+ C YF E N+++ +YVDDL+I G +++EFK +I +RF ++DLG
Sbjct: 839 WNTCLNDFLIQYGLKRSSAKPCIYFCH----EKNIIIGIYVDDLLIVGNMAEINEFKGSIKKRFSVKDLG 904
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A1J3GXZ4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GXZ4_NOCCA) HSP 1 Score: 62.8 bits (151), Expect = 8.780e-11 Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKV-DEFKHNISQRFRMEDLG 210
WN LD L G+ + +S Y R +EG + L++A+YVDDL +TG KV DEFK +S +F M DLG
Sbjct: 34 WNTKLDQILKGMRFKKCAKESAVY--RKEEGGSLLIIAIYVDDLFVTGNNLKVIDEFKAGMSSKFEMSDLG 102
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A6D2I799_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I799_9BRAS) HSP 1 Score: 64.7 bits (156), Expect = 1.620e-10 Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREK-VDEFKHNISQRFRMEDLG 210
WN LD L G+G + +S Y R EG + L++A+YVDDL +TG K +DEFK +S +F M DLG
Sbjct: 133 WNTKLDQILKGLGFKKCAKESAVY--RKQEGGSLLIIAIYVDDLFVTGNTLKAIDEFKAGMSSKFEMSDLG 201
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI) HSP 1 Score: 63.5 bits (153), Expect = 4.220e-10 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVD-EFKHNISQRFRMEDLG 210
WN D L +G RS DSC YF RD++ + +++AVYVDDL+I EKV K +SQ F M+DLG
Sbjct: 787 WNKKFHDTLTDMGFKRSQADSCVYFKRDNK--SLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLG 855
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A1B6EXU5_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EXU5_9HEMI) HSP 1 Score: 59.7 bits (143), Expect = 6.850e-10 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
WN+T L+ +GL+RS D C YF++D L + ++VDD ++TG KV+E N+ + F ++DLG
Sbjct: 27 WNDTFSKALIKLGLDRSQYDYCLYFAKD------LYLLLFVDDALVTGNLNKVNELISNLHEEFNVKDLG 90
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A8J5Y8L8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y8L8_9ROSI) HSP 1 Score: 60.5 bits (145), Expect = 3.410e-9 Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGR-REKVDEFKHNISQRFRMEDLG 210
W +D +LV +G NRS ++ Y ++ E E L+V++YVDDL++TG ++K+ EFK + F M DLG
Sbjct: 141 WYARIDSYLVSLGFNRSVSEPTLYVKKN-EAEIQLIVSLYVDDLLVTGGDQDKLAEFKAKMKDMFEMSDLG 210
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A8J5YH47_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YH47_9ROSI) HSP 1 Score: 60.8 bits (146), Expect = 3.480e-9 Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKV-DEFKHNISQRFRMEDLG 210
W + +D +L+G+G RS ++ Y +++ G+T L+V+VYVDDL++TG + + +FK + Q F M DLG
Sbjct: 101 WYSRIDSYLIGLGFERSLSEPTLYV-KEENGKTQLIVSVYVDDLLVTGGDQAMLVDFKTKMHQMFEMSDLG 170
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7RGU0_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGU0_9NEOP) HSP 1 Score: 60.5 bits (145), Expect = 4.940e-9 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
WN+T+ V GL + T D C +F+ ++VA+YVDD++I G R+ V++ K +SQR ++DLG
Sbjct: 139 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 202
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7PFT8_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PFT8_9NEOP) HSP 1 Score: 60.5 bits (145), Expect = 5.160e-9 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
WN+T+ V GL + T D C +F+ ++VA+YVDD++I G R+ V++ K +SQR ++DLG
Sbjct: 899 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 962
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7Q727_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q727_9NEOP) HSP 1 Score: 60.5 bits (145), Expect = 5.180e-9 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
WN+T+ V GL + T D C +F+ ++VA+YVDD++I G R+ V++ K +SQR ++DLG
Sbjct: 1002 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 1065 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig65763.14440.1 >prot_H-paniculata_contig65763.14440.1 ID=prot_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRRback to top mRNA from alignment at H-paniculata_contig65763:589..798+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig65763.14440.1 ID=mRNA_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig65763:589..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig65763:589..798+ >mRNA_H-paniculata_contig65763.14440.1 ID=mRNA_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig65763:589..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |