mRNA_H-paniculata_contig65763.14440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65763.14440.1
Unique NamemRNA_H-paniculata_contig65763.14440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
            WN  L+DFL+  GL RS+   C YF      E N+++ +YVDDL+I G   +++EFK +I +RF ++DLG
Sbjct:  839 WNTCLNDFLIQYGLKRSSAKPCIYFCH----EKNIIIGIYVDDLLIVGNMAEINEFKGSIKKRFSVKDLG 904          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A1J3GXZ4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GXZ4_NOCCA)

HSP 1 Score: 62.8 bits (151), Expect = 8.780e-11
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKV-DEFKHNISQRFRMEDLG 210
            WN  LD  L G+   +   +S  Y  R +EG + L++A+YVDDL +TG   KV DEFK  +S +F M DLG
Sbjct:   34 WNTKLDQILKGMRFKKCAKESAVY--RKEEGGSLLIIAIYVDDLFVTGNNLKVIDEFKAGMSSKFEMSDLG 102          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A6D2I799_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I799_9BRAS)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-10
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREK-VDEFKHNISQRFRMEDLG 210
            WN  LD  L G+G  +   +S  Y  R  EG + L++A+YVDDL +TG   K +DEFK  +S +F M DLG
Sbjct:  133 WNTKLDQILKGLGFKKCAKESAVY--RKQEGGSLLIIAIYVDDLFVTGNTLKAIDEFKAGMSSKFEMSDLG 201          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 63.5 bits (153), Expect = 4.220e-10
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVD-EFKHNISQRFRMEDLG 210
            WN    D L  +G  RS  DSC YF RD++  + +++AVYVDDL+I    EKV    K  +SQ F M+DLG
Sbjct:  787 WNKKFHDTLTDMGFKRSQADSCVYFKRDNK--SLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLG 855          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A1B6EXU5_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EXU5_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 6.850e-10
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
            WN+T    L+ +GL+RS  D C YF++D      L + ++VDD ++TG   KV+E   N+ + F ++DLG
Sbjct:   27 WNDTFSKALIKLGLDRSQYDYCLYFAKD------LYLLLFVDDALVTGNLNKVNELISNLHEEFNVKDLG 90          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A8J5Y8L8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y8L8_9ROSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.410e-9
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGR-REKVDEFKHNISQRFRMEDLG 210
            W   +D +LV +G NRS ++   Y  ++ E E  L+V++YVDDL++TG  ++K+ EFK  +   F M DLG
Sbjct:  141 WYARIDSYLVSLGFNRSVSEPTLYVKKN-EAEIQLIVSLYVDDLLVTGGDQDKLAEFKAKMKDMFEMSDLG 210          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A8J5YH47_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YH47_9ROSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.480e-9
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKV-DEFKHNISQRFRMEDLG 210
            W + +D +L+G+G  RS ++   Y  +++ G+T L+V+VYVDDL++TG  + +  +FK  + Q F M DLG
Sbjct:  101 WYSRIDSYLIGLGFERSLSEPTLYV-KEENGKTQLIVSVYVDDLLVTGGDQAMLVDFKTKMHQMFEMSDLG 170          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7RGU0_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGU0_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 4.940e-9
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
            WN+T+    V  GL + T D C +F+        ++VA+YVDD++I G R+ V++ K  +SQR  ++DLG
Sbjct:  139 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 202          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7PFT8_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PFT8_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 5.160e-9
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
            WN+T+    V  GL + T D C +F+        ++VA+YVDD++I G R+ V++ K  +SQR  ++DLG
Sbjct:  899 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 962          
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Match: A0A2J7Q727_9NEOP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7Q727_9NEOP)

HSP 1 Score: 60.5 bits (145), Expect = 5.180e-9
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRREKVDEFKHNISQRFRMEDLG 210
            WN+T+    V  GL + T D C +F+        ++VA+YVDD++I G R+ V++ K  +SQR  ++DLG
Sbjct: 1002 WNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLG 1065          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65763.14440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A087T1Z9_STEMI1.120e-1244.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3GXZ4_NOCCA8.780e-1145.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2I799_9BRAS1.620e-1045.07Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A0J7KG03_LASNI4.220e-1046.48Retrovirus-related pol polyprotein from transposon... [more]
A0A1B6EXU5_9HEMI6.850e-1038.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5Y8L8_9ROSI3.410e-940.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5YH47_9ROSI3.480e-939.44Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A2J7RGU0_9NEOP4.940e-938.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2J7PFT8_9NEOP5.160e-938.57Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
A0A2J7Q727_9NEOP5.180e-938.57Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65763contigH-paniculata_contig65763:589..798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue3e-09
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930773.7182932-CDS-H-paniculata_contig65763:588..7981622930773.7182932-CDS-H-paniculata_contig65763:588..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65763 589..798 +
1691481445.9762812-CDS-H-paniculata_contig65763:588..7981691481445.9762812-CDS-H-paniculata_contig65763:588..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65763 589..798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65763.14440.1prot_H-paniculata_contig65763.14440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65763 589..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65763.14440.1

>prot_H-paniculata_contig65763.14440.1 ID=prot_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
WNNTLDDFLVGIGLNRSTTDSCFYFSRDDEGETNLLVAVYVDDLVITGRR
EKVDEFKHNISQRFRMEDLG
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mRNA from alignment at H-paniculata_contig65763:589..798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65763.14440.1 ID=mRNA_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig65763:589..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTC CACTACCGACTCATGCTTCTACTTTTCTCGCGACGATGAGGGAGAGACAA ATCTTCTGGTGGCCGTGTATGTCGACGACCTGGTCATTACTGGCCGTCGT GAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGATGGA AGACTTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig65763:589..798+

>mRNA_H-paniculata_contig65763.14440.1 ID=mRNA_H-paniculata_contig65763.14440.1|Name=mRNA_H-paniculata_contig65763.14440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig65763:589..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTC
CACTACCGACTCATGCTTCTACTTTTCTCGCGACGATGAGGGAGAGACAA
ATCTTCTGGTGGCCGTGTATGTCGACGACCTGGTCATTACTGGCCGTCGT
GAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGATGGA
AGACTTGGGCTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGAC
TCAACCGTTCCACTACCGACTCATGCTTCTACTTTTCTCGCGACGATGAG
GGAGAGACAAATCTTCTGGTGGCCGTGTATGTCGACGACCTGGTCATTAC
TGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTT
TTAGGATGGAAGACTTGGGC
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