mRNA_H-paniculata_contig6570.14432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6570.14432.1
Unique NamemRNA_H-paniculata_contig6570.14432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6570.14432.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.630e-20
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:  139 RDTLRKSRRVSRPLLKAMAVSLALLGLARLVLGDLLAETINPMDELLFGDDLTKLYSDKAAKPPREALPFPLDSDMMPGRTRIKGKGVQRSPRPMGEEDGQGE 447
            R +LRK+RR+SRP LKAMA  LALL +ARL LG +LA  I+P  ELLFGDD+  LYS       +  +PF  D+  +PGR ++KGKGVQR PRP GEE   GE
Sbjct:  285 RVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTNKKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEEGRGGE 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6570.14432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE5.630e-2056.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6570contigH-paniculata_contig6570:1057..4440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size918
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6570.14432.1prot_H-paniculata_contig6570.14432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6570 1438..4431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930772.4538424-UTR-H-paniculata_contig6570:1056..14371622930772.4538424-UTR-H-paniculata_contig6570:1056..1437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6570 1057..1437 -
1691481445.6213963-UTR-H-paniculata_contig6570:1056..14371691481445.6213963-UTR-H-paniculata_contig6570:1056..1437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6570 1057..1437 -
1622930772.5238657-UTR-H-paniculata_contig6570:4431..44401622930772.5238657-UTR-H-paniculata_contig6570:4431..4440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6570 4432..4440 -
1691481445.6528893-UTR-H-paniculata_contig6570:4431..44401691481445.6528893-UTR-H-paniculata_contig6570:4431..4440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6570 4432..4440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930772.4709005-CDS-H-paniculata_contig6570:1437..16721622930772.4709005-CDS-H-paniculata_contig6570:1437..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 1438..1672 -
1691481445.629671-CDS-H-paniculata_contig6570:1437..16721691481445.629671-CDS-H-paniculata_contig6570:1437..1672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 1438..1672 -
1622930772.4842043-CDS-H-paniculata_contig6570:2563..28021622930772.4842043-CDS-H-paniculata_contig6570:2563..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 2564..2802 -
1691481445.6374779-CDS-H-paniculata_contig6570:2563..28021691481445.6374779-CDS-H-paniculata_contig6570:2563..2802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 2564..2802 -
1622930772.5013478-CDS-H-paniculata_contig6570:4377..44311622930772.5013478-CDS-H-paniculata_contig6570:4377..4431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 4378..4431 -
1691481445.645046-CDS-H-paniculata_contig6570:4377..44311691481445.645046-CDS-H-paniculata_contig6570:4377..4431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6570 4378..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6570.14432.1

>prot_H-paniculata_contig6570.14432.1 ID=prot_H-paniculata_contig6570.14432.1|Name=mRNA_H-paniculata_contig6570.14432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MVEVGEGSAGEVVAFSKWGTHSTIQLLLYFMFVLLISGARFSKRDTLRKS
RRVSRPLLKAMAVSLALLGLARLVLGDLLAETINPMDELLFGDDLTKLYS
DKAAKPPREALPFPLDSDMMPGRTRIKGKGVQRSPRPMGEEDGQGERGGV
HKGAGLLDIELDDGDEVELDYEELL*
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mRNA from alignment at H-paniculata_contig6570:1057..4440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6570.14432.1 ID=mRNA_H-paniculata_contig6570.14432.1|Name=mRNA_H-paniculata_contig6570.14432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig6570:1057..4440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGGGCAATGGTCGAGGTGGGGGAAGGCTCGGCGGGCGAAGTTGTCGC
GTTTTCAAAGTGGGTGAGAGCAAAAATAATAATCTAAAGGAAAATAACTT
TAGAAGTGGTCACAGTTCGCTTCTTGAAGTTTTAGTGGAGAGTACCCCCC
TCCCCAGAATCGCAACCTGCTGAGTGCTGTCACAATACTGTTGGGTATCA
GATATGCTTATCTTTGTGGCTTTTTAAATGATATTTTGGGTGAAAAAGGT
TGAACGTTCAAGGTGTACCCTCTTTTTCCATCCCATGTGCCAATGTTGGT
ATACCGGAAGTGAAAAATAACGGTGTCCCGTATGTGCGTTTTTATTGATG
TTAACGACGTGGCCCTCTTTATTCTTCGTGAAGGACGCACCTCACGATGG
AATCCCTTCAGAGTAAGCAACAAGCAGAGTATTTGGTCTTGCTGCGGAGA
GGACCGGGGGCGGCTGTATCTATTGGTATTGAAGCATGGGCCTGAAATCT
TCTTTAGCCACTGGAGGGGAAGGGAGGGGAGGCAGTACCCCCGCTGTTGT
TCGGCCGGCATGCTGAATACGAACCTCACGCAGCTTACGTAATATGCCAT
ATTCCATGTACTGTACAGAACGTCAGCGCTACGCTCTATTAATTTTCCAC
GGCCAATGGGCCATGTGATCGTGCCTCCGAGCTATTGGACGTACATGTTG
GAGAATAACGAAGAACTGGTTAGCGCGACACCAGGAATACTCCGCATGCA
TACAGCATGTCTGTGGAAGCCTCCGAAAGTCAGATTCTGGCTACAGAGTT
CTACCTGCTAGGCTACTCGGACCGTGTGACCGATGCAGCTTGATCGTAAC
GGGGCTGCGCGGGTATTAAGTGCATACTGTCAACCTAAAGGACAATTGTT
TTTACCTTCCCCAATCAATCGTGCGGCCACTGCAGCGGGGATCCCTGCCC
CCCACCCCCCTCTTCATGACGCTTGATTCAGAGAGTGATAGTGCTTTGAT
TTCTTCTCGTCAAAATGCATTTGAGTACACCTTTCAACTGTGACTGGTTC
TTGAGGTCAAGTCTGAAAAATGACGTCGGTTGTGAGTCTTGTTCGTTTTG
GTGTCCTTGTGTCGACAGCTACATTATTAACCTTTTTTTATTATTATTAA
CAAGCTACTACTACCCTGCGTACTCTCGGCGTTAGACGAACATGCGCGTA
GAAACTCGCAAAAATGAGTCACATGTGTAGCCGTAAAACAACATTTTCAC
CTTTTTACTGTTTGTTGTCGGTTACAAGTAAATATTCGGAGTCATGATTG
TGACCTACCTGGTACACGAAATTCGACATAATTATATATATATAGCTCGA
ATTACCGCAATTTGCCGAAACGCAAAATGGGCTTATCGTTTGGTGAGGAT
TCGCAACTTCGGTGCTTTGTCATTTGTAACAGTGTTGATTTTACTACTAA
AATTCTAGGTGGTGGTATATATATGATTTCGCATCTCACACACTGGAGTT
CTACGGGAGTAGATCTAGTCCACATTCTTCCGCATGCTGTTTCCGGCCCA
AGCAGTACTATAAGTGCCGTCCCTCCCCCCTCCACGTGCGCGCCCCACAC
CATCCTTTCCGTTTGCCTATTCTATGCGGGCTCCACAGGGCACTCACTCC
ACCATTCAGCTCTTACTATATTTTATGTTTGTTTTGCTAATTTCCGGTGC
TCGGTTCTCCAAGAGGGATACTCTCAGGAAGTCTAGGCGAGTGTCAAGGC
CGCTGCTCAAGGCCATGGCGGTTTCGTTAGCCCTGCTCGGACTTGCGCGG
CTTGTGCTGGGAGATCTCCTAGCCGAAACGATTAACCCGATGGACGAGCT
CCTCTTCGGCGACGACCTCACCAAGTTGTGAGTACATGCTATTTATATAC
TGTAGACTCCTGCCGCCTTTTTTTTTTTTTTTTTGCGTTGCGTGTTTTCT
GATTTTTTTGCTGTGCGAAAGTAGTGTACAGCACTACGGAAAATATATCG
GCCGACCCATTCGACAGAAGGCATCATTGCAAGCTTAAAGCTTACCTTCG
TAATATTGTCATGTATGATCTGTCATTCGAATATTCCAAGCGTCGCGGTT
TTTACCTCTTGTCGTCTCTCCTAGTGTTTCTGTTACGCCTACCGTGTTAG
AGGGTATTCACCTTTGGTTTTCATGTTTACAACTGCAAGTAGCCGAAGGA
CGGAAGGGTGCACTTTCGCCGTAGTAGCCGTATTCAACAAAACGGCGATA
CAGCAACTATTATGAACCCATGGGTATCGTACACCGGAGTGCGAACGATT
TTTGAAGGCGGTTGTCCCAGAGGATGTCATTACCTAGCTACTGATGACGA
ACAGTAGTGTACAGTCGGAAACGCCTTGCGGAGATCTATCTGTCGATTAA
CGGTCTTTTTCGACCTCTTAATATCTTCGTTCTCGAGAGAGCTGCATTTA
AAGAACGTTCGCACCCCGGTGCAATACTCCGCCGATTTCACGATAGTTTT
TTCCCACCCTCGGCGCTTGGGTAAGGGCTCGACGAATGGTTTGGAGGGGG
AGAGACTTGAGGAGGGAACTGAGTTGTCCATCAGTCACTTTAGATATATC
CGCTCCCCTTTTTTTGCCTCTGTGTCCCTCCTACTCTGCTACAAGTACAA
ACCAACCCCTCCCCTCTCCACCTCCTACTCTCTGAATATCGGTATAGCTC
TGCCTCTCGTTCCCCCCCTTGAGCTGTTGTTCTACCTAATAAATTAACTA
ACTGACTTCATGCATCAGGTATTCTGACAAAGCGGCGAAGCCGCCTAGGG
AAGCGCTCCCGTTCCCCCTAGACTCGGACATGATGCCTGGTCGAACTAGA
ATCAAGGGGAAAGGCGTGCAGCGTTCGCCTCGGCCAATGGGAGAGGAGGA
CGGACAGGGGGAGCGGGGAGGGGTCCACAAGGGGGCTGGGTTGTTGGATA
TAGAATTGGATGATGGCGATGAAGTAGAATTGGACTACGAAGAGTTGTTG
TAAAAGGTGTGGGTTTTGTGCTACTAATTTAGTGTGACATTGCCACAGTT
GAACTGTAACTGTAACTGTAACTGTTGCAGCTACAACCGTAACTGTCTTT
TTTGCATTTTCAACCGTGTTGAATTGTTACCTCTGGTGCAGTCTAGCTGT
TACGGTTGCAATTTTACCAGAACTGAAAGTTTGTCAAAGTAGCTGCAACT
GAGTGGGAAAAGAGAGACCGGCGGGCGATGATGGACTGATGTGGATTTTT
CAAAAACAGGACTGTTGTTTGGCCGGTGGGAGCTGAGTCGTATGCTGGTG
TCTCGGGCCGTGCTCAATTTTTCTGCGAGTGAGGCCGCAGCACCATAGGT
TTTCCTTACTTATAACAGCGAACACTCTAACGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig6570:1057..4440-

>mRNA_H-paniculata_contig6570.14432.1 ID=mRNA_H-paniculata_contig6570.14432.1|Name=mRNA_H-paniculata_contig6570.14432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig6570:1057..4440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGAGGTGGGGGAAGGCTCGGCGGGCGAAGTTGTCGCGTTTTCAAA
GTGGATGGTCGAGGTGGGGGAAGGCTCGGCGGGCGAAGTTGTCGCGTTTT
CAAAGTGGGGCACTCACTCCACCATTCAGCTCTTACTATATTTTATGTTT
GTTTTGCTAATTTCCGGTGCTCGGTTCTCCAAGAGGGATACTCTCAGGAA
GTCTAGGCGAGTGTCAAGGCCGCTGCTCAAGGCCATGGCGGTTTCGTTAG
CCCTGCTCGGACTTGCGCGGCTTGTGCTGGGAGATCTCCTAGCCGAAACG
ATTAACCCGATGGACGAGCTCCTCTTCGGCGACGACCTCACCAAGTTGGC
ACTCACTCCACCATTCAGCTCTTACTATATTTTATGTTTGTTTTGCTAAT
TTCCGGTGCTCGGTTCTCCAAGAGGGATACTCTCAGGAAGTCTAGGCGAG
TGTCAAGGCCGCTGCTCAAGGCCATGGCGGTTTCGTTAGCCCTGCTCGGA
CTTGCGCGGCTTGTGCTGGGAGATCTCCTAGCCGAAACGATTAACCCGAT
GGACGAGCTCCTCTTCGGCGACGACCTCACCAAGTTGTATTCTGACAAAG
CGGCGAAGCCGCCTAGGGAAGCGCTCCCGTTCCCCCTAGACTCGGACATG
ATGCCTGGTCGAACTAGAATCAAGGGGAAAGGCGTGCAGCGTTCGCCTCG
GCCAATGGGAGAGGAGGACGGACAGGGGGAGCGGGGAGGGGTCCACAAGG
GGGCTGGGTTGTTGGATATAGAATTGGATGATGGCGATGAAGTAGAATTG
GACTACGAAGAGTTGTTGTAAGTATTCTGACAAAGCGGCGAAGCCGCCTA
GGGAAGCGCTCCCGTTCCCCCTAGACTCGGACATGATGCCTGGTCGAACT
AGAATCAAGGGGAAAGGCGTGCAGCGTTCGCCTCGGCCAATGGGAGAGGA
GGACGGACAGGGGGAGCGGGGAGGGGTCCACAAGGGGGCTGGGTTGTTGG
ATATAGAATTGGATGATGGCGATGAAGTAGAATTGGACTACGAAGAGTTG
TTGTAA
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