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Homology
BLAST of mRNA_H-paniculata_contig6445.14261.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.120e-48 Identity = 118/236 (50.00%), Postives = 142/236 (60.17%), Query Frame = 3
Query: 54 MEQVFFRLHLRFVTTVTRLLPPKTRRILEYVTLANAFCLLLSLGWLHSHFVNPKG-QGSAVSCLPAALARAGVDPAHLHVLQIHIRTPLDEGPRGSTVS--SSALTPSPASSSLENHERHIVDASTGISSAASNGRGATIPPDPGPDLLAMQAQSIECATGDQGAEDSCSSSSSGSSTDFGTGRGETVSGDTGVATVAAGNLPSESLPPAVFYSMKMVTGKDAVGTLSGPGTLGIE 752
MEQVFFRLH+RFVTTVTRLL PKTRR+LEYVTLANAF L+ SL WLH+ FVNPKG QGSAVSCLPAAL +AGVDPA LHVLQIHIR P D+ + ++ SS +++ R +A +S + + GA G L ATG + + S G++ G+ + L S L P +FYSMK+VTGKDAVGTLSGPGTLGIE
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGSQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXKNLMSFPDGSSRIDDSSRSGTNAEQQVSDSRRHSGGAAGDAGLGISGLGGGESGYASATGTAASACTGSGEEEGAAGTMGSXXXXXXXXXXXXXWLLPPRLDSPPLSPEIFYSMKLVTGKDAVGTLSGPGTLGIE 236
BLAST of mRNA_H-paniculata_contig6445.14261.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI) HSP 1 Score: 156 bits (395), Expect = 9.290e-39 Identity = 122/272 (44.85%), Postives = 134/272 (49.26%), Query Frame = 3
Query: 54 MEQVFFRLHLRFVTTVTRLLPPKTRRILEYVTLANAFCLLLSLGWLHSHFVNPKG-QGSAVSCLPAALARAGVDPAHLHVLQIHIRTPLDEGPRGSTVSSSALTPSPASSSLENHERHIVDASTGIS----------------SAASNGRGATIPPDPGPDLLAMQAQSIECATGDQGAEDSCSSSSSGSSTDFGTGRGETVSGDTGVATVAAGNLPSES-------------LPPA---------VFYSMKMVTGKDAVGTLSGPGTLGIE 752
MEQVFFRLH+RFVTTVTRLL PKTRR+LEYVTLANAF L+ SL WLH+ FVNPKG QGSAVSCLPAAL +AGVDPA LHVLQIHIR P D+ +AA G G + L TG A +C TG GE V AAG + SES LPP +FYSMK+VTGKDAVGTLSGPGTLGIE
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADAGLGMS--------GLGXXXXXXXSVTGTTAAT-AC------------TGSGEEVG--------AAGAIGSESXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIE 243
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 162.2 |
| Seed ortholog evalue | 4.1e-37 |
| Seed eggNOG ortholog | 2880.D8LLK2 |
| Preferred name | TMEM259 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898 |
| EggNOG free text desc. | positive regulation of ERAD pathway |
| EggNOG OGs | KOG2092@1,KOG2092@2759 |
| Ec32 ortholog description | Membralin |
| Ec32 ortholog | Ec-04_005490.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1007 |
| Cds size | 954 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6445.14261.1 >prot_H-paniculata_contig6445.14261.1 ID=prot_H-paniculata_contig6445.14261.1|Name=mRNA_H-paniculata_contig6445.14261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MEQVFFRLHLRFVTTVTRLLPPKTRRILEYVTLANAFCLLLSLGWLHSHF VNPKGQGSAVSCLPAALARAGVDPAHLHVLQIHIRTPLDEGPRGSTVSSS ALTPSPASSSLENHERHIVDASTGISSAASNGRGATIPPDPGPDLLAMQA QSIECATGDQGAEDSCSSSSSGSSTDFGTGRGETVSGDTGVATVAAGNLP SESLPPAVFYSMKMVTGKDAVGTLSGPGTLGIELRGGRGGGGAPAAAGKA GKDGSADVCGTAEGGWIGSSGSGSDVCGAGGGRGIIGGSGEDRLSAVQTL VNALSWGKGVTEVEREAV back to topmRNA from alignment at H-paniculata_contig6445:3693..9119+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6445.14261.1 ID=mRNA_H-paniculata_contig6445.14261.1|Name=mRNA_H-paniculata_contig6445.14261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5427bp|location=Sequence derived from alignment at H-paniculata_contig6445:3693..9119+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCTGATCTCTCGGTTAACGGGGATACTACAGAACGACGGACGGAGGAATC
ACAATGGAACAGGTGGGAAGATCATTCGAGATATGATTCCCGTGAAAATC
CAACGTTGGGACAAGTCATTGTATAAAATCCTTCTGACAGCATAGACAGG
ACAAATACCGATAGTTGTAGAGTGGGTGACAGGGGGTTACGGGAGTACAG
TATAGGGGTGTACTCAATCCCGGTGTATTTGCGTACCAGGCACAAATCAA
CAAGAAAATGTGTAGTACATACAGGTAATACATATACAAGTGGCAAGTTG
GCCCAGTTTGGGATGGGACAGCAACGACAACCCCAACGGCTGGGGTGACT
AGACTGTGTCCACCGGAACACGCGTTTTGGAACGCAACGAGTGATGATGC
TCGGCATTTCCCGACATCGCCCACTACAGACAAACCGAACTCATTCCAGC
CAGTTCGTATTTACGACAGACAGAGTAGAGTGCGGTGGGTTAGAACAGAC
AGTGTGAAGTAAAGCTTAGAAATAGATCCAGAGATGCCAGTTAGGAGACA
CTATCCGAAACTACAATAGGACGTTATGATGGCGGGTGAGCCACTACCAA
TAAACACATCATTGGGAACGATGTACTGAGTTTCTATTTTCCACATGTCA
TGCTTGTGTAATCCAGACAACCCTGCCAAGCGTGGTTCACAAGTTCGTGC
TTACTTTTGAACTAACTTCGGCAGCCTTCACTTGATGAGAGCACTAGCAC
TCTACCGCAGTGTTTTGTGTTGTTATTGATGCATCAACACCGCGTTCACG
GAAGCCCGGGAGCATATATCGTAGGTCTCTCTTTGAGCACTCAAGCGCCG
GTTGTTTGTAGAACCCACCTCAATTTAAAAAAAATGGAGAGGGCGCTGCC
CCAGGAAACATAAAAGTATACAAACAGCAGTAGAGGAGATCTTCAACATG
AGGAAGAAGAAAGGGGAGGGCGGAGTTTGTAACGGCGATAATTTTGACAT
ATCATAAGTTTCTTTCCATTATGTTTAGGCGAAACTATCAAATTCTTAGG
ATGGTCTTCTGGGCGGAGGCGTGTTGAGTCCATAAAAATCTAAGATAGAC
CATTATTGGTTGGCGCTAAAATGCCCCCGGTTCTGGTCAGATTCGCTTCT
GCTGTGACCATTTGATGGTTTGAGTACACCGTCAAGGCATTACACAAGCC
GAAAGGCAGCGCTGAATAGACATGACATCACCGTGTGGTCGCCGTACTGT
GCAGACAGCCCGCATATCAATACTCTCGGTACTGCCGAAGAATTCGTCAG
GCCGATCACAAGCCCCCATAGCTTCCCACCCCCAATGTGCTGTTCTAGAC
AATCAAGATGCAACATAGCCACGTTTCCATCCCACAAATTATCCACCTTG
CACAAAGTTACCTCATGCGCTGCCACAGTTGCTTGTGATGACGTCTGGGC
AGCGGCGAGGGTGTGTATGTGTATGTGTGATATGGCCCAAGACAAACTTG
GTAAGAGTAGAGTGGATACATGTGAAATTGGGGGCGGGAAGCTGTGCGTG
CGTATGCTCCGCCTGGTGAGTTTTTCGGCAGCACCAGGCATTTGGACATG
CGGGCTGTCTTGACAGTGAGGCAGACACACGGTGATGACGTGTGACTACC
CAACGCTGCCTTTAGGCTTGTGTGGGGTCTTGACAGCATGCTGCAACCAC
CGAACGGTAATCGCAGAAGCGAACCTGACCAGAACCCTAGAGTCGTTACT
GCCAAGCGACGGTCAATGTCGGATCTTATGGACTAAACATGCCTCCGTCC
AAAGAAGGTCTTTCTGAGAATTTCGCTTAATCGAAATCAACCTTTTCACC
CCGTTGACGACCGACATACCCAGACTGATCTCGCCGCTTCGAACGGAACA
GCGTGGACTGCGGCATTAAACAGGAGACATAACTGCATCATTCATGTGTA
CAGCGTACAAGATTGCTGTATCTGACGCGCCAACATCAAGTTGGCTCCCA
CAGCCAAGGAGAACGAACAAAAAACAATTCAATGTGGTGGGATGGGAAAC
ACTGTCTTTTTGCCGAGTAATTGCTGTTTGTACATATGTACCGTGGCGAT
GTTATCGCAGAGGCCGACAACGAATGGGTGCGCCTCGAATATGAACAGCG
AAGACCCTATTCTGATGGGCCACTGAACAAGGAATTACCTACTTCTCTTG
TCACAACAGTAGTCGGGCCAGGAAACCCTTGCATATAGCAAAACACTGGC
ATGGCTTCTGCTGATGATGCGACAACTCAATGTTTAACCTCAGGAAGTTG
CTGTATCTTGACACACGTAGTGTACGTTTACATACTAACTACACGGTAGA
CACGAGCACACGAGCTGCCAGGGTACGCTGGAGATATTGAGTCGTGTCGG
AGGCGGCACTTAGGCACGAAAGGCTTGGCTTGCCGAAGGCGAAACATTTG
ATGGGCATAATCATGTCATAGATCGCTTAGTCCTGCGTTTAGTCACCACT
TCATACCCGAAGCATATATCCAATACATAACCTTTTGTTGTGGAGAGGTA
GACCTCGATATAGAGCTAATGATGACAACAACGCAGAGAGTCAAACAATG
AGGACCACAGCACAGTTCGTCCCTACTGTAGGCCCCAAGCGAGGGCGATC
AAAAACCGAGAAATGCCGCTCGGCCAGCGGCCAGTGGCCCCGAAGAAACA
ACACTCTCCGCAAAACGGTAGGCACGGCAAGCGTGCATAGATACGCGGAC
ACAAATAGTATATAGTGATACGAACGGGAAGAGCGTGTTCTCCGCCCCGA
GGGTCCCCGTCACAGGGAACAGAGCGCGGATATAGCCGGGCGACGACTGA
GACGACCGAAACGGAACGCTTTCAGAGAAAAGATAACAGTAGAAATATCT
ATCGCCAATATATTTATCAACGAATGTAACCCTTTGTAACCCTCCCGGAT
GCAGTTTGAAAACAAAGAGGGCAACTGAAAGTGAATGTTGAACGCTGCAG
TCGTTGGGCTATGTACTCAAGTTGCGTCAGCTGAATAGTGGCGGGTTCCT
ATCGCCGTAGTCATGTCCTATGCGTCGTTAATCCATCCCCTGCCTTCGAG
GCAATGGAGATTGGACGGGGACTGGTCGTAGATTGGGTACACGGTTCAAA
CAGCGTAAGGAGTACTGCGAACCCTCACCAAATGGCCAAGCACTTTGCCA
ATTTGCCACAATGTACGGTAATTTGAGTATACATACATCTAATTCCTGAG
GTTCTGTAGCCCGCAATCGTGGCTATGTACTACTCATCAGCAACACACAG
CCAGTCCAAGGGGACTTGGAGAGTCTGCCCGCATTGACTCAAGTACACTC
GCTGAGAGAGGGTTTGCCACTCGGAAGTGTGGTGCTAGTTGCAAGTGCAT
TTCCATGTGCCACATTGGTACATGCATACTAGTGCACGCCCAAGATGACT
CCATTCGCGGGGACGCCCGACCGCGTATGGTCTCTGACCCGTTGTTTCCT
TGTGCCTTTTACCCTTTGTGTTGCTGTTGTATGCTGTTGGGAAACGTCGA
ACGCCAAAATGGACGCGTCGTGCGCACTAAATGGTCGTGCTCCTTTTGTT
TTTGGTACATCGGGCAGGTGTTCTTCAGACTCCACCTCCGGTTTGTTACA
ACGGTGACCAGGTTGCTTCCACCGAAGGTACAATGAGCTTTTTTTCGTCT
CGTCCTCTCCTCCCAATTTTTTGCCGATCTCTGTTGCGTTTACCGTTCCC
GCAGTCTTTGCTCTTATGGTCCGATCGGTCTGTGAATAGAAGACGTTCCC
ATCGCTTACCTTACGTTTCGTAAATTTCCCAAGTTGTACCGAAAGCCGCC
TTAACCTGATAAAGCAGCTAAATGCGACAGTTGAGTATACAAGAGAATTA
TAGACTCCATGTATGCGCGTTTCCTCTTTGTTGAATTTCTTGGCGTGACA
ATCGATAGGACCACTCGTATCTCTTCTCCACACCACTCTATGCCGATATA
TATCCCGATAAACCCCTTTCTCCGCGCCGCCGCTGCCGCCGCGTCCAATG
TTCACCCTCCGGCCAAATAGACGAGGCGAATCTTGGAGTACGTTACTCTC
GCAAACGCGTTCTGTTTGTTGCTCTCGCTGGGGTGGCTTCACTCTCACTT
CGTGAATCCCAAAGGGCAGGGTTCAGCGGTTTCATGCTTGCCAGCGGCGC
TTGCGCGAGCCGGGGTGGACCCTGCACATCTACACGTGCTGCAGGTGCGG
GTGCGAGCAGTGTGTAGAATTATTTCTCCTGATCTCCCTCCCCCCTCCCC
GAGTGAGATATCTGAAGGCTCTGGTTTGCGCTGTGGTTTATAGCTTGATG
TAGAGACATGCCCAAAGCATTTTGTGATAAAGATTGGCAACGAAAAGACA
CATTTTGGCTCAGATTTGGTCGATTCAAGGGCTGATTCCGGGCTACTGTC
TCGGGTAGGTACGGCATCTTTGAGGGAGGGGCAAGGGCGGCGGCGGCTGG
GGGCGGGGGGGTACTCATATTTTGAATGCTATAGCTGTCAGACTATTGAC
CACGCATCCTCGAAAGGAAGGAGCTTCAACGGGGAGGGGGGGCGGGAAAT
GTATGAAGGTGTCTCGCTGTAGTGTGTTGTGTTGCACAAACAGTAGAGCG
CGCTTTTTATTATTCTAAACAAATAGATGCCGACGCTGCCTGCGCCAAAA
CCTAATTCTGCTGCAGATTCATATACGGACACCTTTGGACGAAGGACCAA
GGGGCTCGACGGTAAGCAGTAGCGCTTTGACGCCTTCACCGGCCTCCTCC
TCTCTGGAAAATCATGAACGACATATCGTCGACGCTAGTACCGGGATATC
CTCTGCTGCCAGCAACGGCCGCGGTGCAACGATACCTCCAGATCCAGGCC
CAGACCTGCTAGCAATGCAGGCGCAAAGCATAGAATGCGCCACGGGTGAC
CAGGGCGCTGAGGATAGCTGCAGCAGCAGTAGCAGCGGCAGCAGCACCGA
TTTCGGTACCGGGCGAGGAGAGACCGTTAGCGGAGATACAGGCGTGGCGA
CGGTGGCGGCTGGGAATCTACCATCGGAGTCACTGCCTCCTGCGGTATTC
TACAGTATGAAGATGGTGACGGGAAAAGATGCGGTGGGAACGCTATCCGG
GCCAGGCACGCTAGGGATCGAGCTCCGTGGGGGTAGGGGGGGGGGAGGAG
CACCCGCAGCGGCAGGGAAAGCTGGCAAGGACGGCAGCGCTGACGTTTGT
GGAACGGCAGAGGGTGGTTGGATAGGCAGCAGCGGCAGCGGCAGCGACGT
GTGTGGCGCGGGCGGCGGTCGAGGAATAATAGGCGGAAGCGGAGAAGATC
GGCTCTCGGCGGTTCAAACGCTTGTCAACGCGCTCTCGTGGGGGAAGGGG
GTAACGGAGGTTGAGCGCGAGGCGGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig6445:3693..9119+ >mRNA_H-paniculata_contig6445.14261.1 ID=mRNA_H-paniculata_contig6445.14261.1|Name=mRNA_H-paniculata_contig6445.14261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig6445:3693..9119+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAACAGATGGAACAGGTGTTCTTCAGACTCCACCTCCGGTTTGTTAC AACGGTGACCAGGTTGCTTCCACCGAAGGTGTTCTTCAGACTCCACCTCC GGTTTGTTACAACGGTGACCAGGTTGCTTCCACCGAAGACGAGGCGAATC TTGGAGTACGTTACTCTCGCAAACGCGTTCTGTTTGTTGCTCTCGCTGGG GTGGCTTCACTCTCACTTCGTGAATCCCAAAGGGCAGGGTTCAGCGGTTT CATGCTTGCCAGCGGCGCTTGCGCGAGCCGGGGTGGACCCTGCACATCTA CACGTGCTGCAGACGAGGCGAATCTTGGAGTACGTTACTCTCGCAAACGC GTTCTGTTTGTTGCTCTCGCTGGGGTGGCTTCACTCTCACTTCGTGAATC CCAAAGGGCAGGGTTCAGCGGTTTCATGCTTGCCAGCGGCGCTTGCGCGA GCCGGGGTGGACCCTGCACATCTACACGTGCTGCAGATTCATATACGGAC ACCTTTGGACGAAGGACCAAGGGGCTCGACGGTAAGCAGTAGCGCTTTGA CGCCTTCACCGGCCTCCTCCTCTCTGGAAAATCATGAACGACATATCGTC GACGCTAGTACCGGGATATCCTCTGCTGCCAGCAACGGCCGCGGTGCAAC GATACCTCCAGATCCAGGCCCAGACCTGCTAGCAATGCAGGCGCAAAGCA TAGAATGCGCCACGGGTGACCAGGGCGCTGAGGATAGCTGCAGCAGCAGT AGCAGCGGCAGCAGCACCGATTTCGGTACCGGGCGAGGAGAGACCGTTAG CGGAGATACAGGCGTGGCGACGGTGGCGGCTGGGAATCTACCATCGGAGT CACTGCCTCCTGCGGTATTCTACAGTATGAAGATGGTGACGGGAAAAGAT GCGGTGGGAACGCTATCCGGGCCAGGCACGCTAGGGATCGAGCTCCGTGG GGGTAGGGGGGGGGGAGGAGCACCCGCAGCGGCAGGGAAAGCTGGCAAGG ACGGCAGCGCTGACGTTTGTGGAACGGCAGAGGGTGGTTGGATAGGCAGC AGCGGCAGCGGCAGCGACGTGTGTGGCGCGGGCGGCGGTCGAGGAATAAT AGGCGGAAGCGGAGAAGATCGGCTCTCGGCGGTTCAAACGCTTGTCAACG CGCTCTCGTGGGGGAAGGGGGTAACGGAGGTTGAGCGCGAGGCGGTGATT CATATACGGACACCTTTGGACGAAGGACCAAGGGGCTCGACGGTAAGCAG TAGCGCTTTGACGCCTTCACCGGCCTCCTCCTCTCTGGAAAATCATGAAC GACATATCGTCGACGCTAGTACCGGGATATCCTCTGCTGCCAGCAACGGC CGCGGTGCAACGATACCTCCAGATCCAGGCCCAGACCTGCTAGCAATGCA GGCGCAAAGCATAGAATGCGCCACGGGTGACCAGGGCGCTGAGGATAGCT GCAGCAGCAGTAGCAGCGGCAGCAGCACCGATTTCGGTACCGGGCGAGGA GAGACCGTTAGCGGAGATACAGGCGTGGCGACGGTGGCGGCTGGGAATCT ACCATCGGAGTCACTGCCTCCTGCGGTATTCTACAGTATGAAGATGGTGA CGGGAAAAGATGCGGTGGGAACGCTATCCGGGCCAGGCACGCTAGGGATC GAGCTCCGTGGGGGTAGGGGGGGGGGAGGAGCACCCGCAGCGGCAGGGAA AGCTGGCAAGGACGGCAGCGCTGACGTTTGTGGAACGGCAGAGGGTGGTT GGATAGGCAGCAGCGGCAGCGGCAGCGACGTGTGTGGCGCGGGCGGCGGT CGAGGAATAATAGGCGGAAGCGGAGAAGATCGGCTCTCGGCGGTTCAAAC GCTTGTCAACGCGCTCTCGTGGGGGAAGGGGGTAACGGAGGTTGAGCGCG AGGCGGTG back to top
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