mRNA_H-paniculata_contig6398.14202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6398.14202.1
Unique NamemRNA_H-paniculata_contig6398.14202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.030e-33
Identity = 62/150 (41.33%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHNPTERE 450
            +I  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  +++MD+G+RR     +G+ QGDG+ P LF + + PI+   ++ ++ LGV   AY+DD+ L + + TEE+V+A+  LV ELA +G+ +N AK+ A+PP  H  T+++
Sbjct:  677 IIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQ 826
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.200e-33
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G RR      G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 381
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BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.310e-33
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 298
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BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.280e-33
Identity = 64/154 (41.56%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLV-LAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV+L AY+DD++ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 291
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.670e-33
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 659
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.810e-32
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L     T EN++ I  +V EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 206
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.680e-32
Identity = 61/153 (39.87%), Postives = 94/153 (61.44%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC++AFN+ KR  I+ + A   P +  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R +++ LGV L AY+DD+ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 283
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.740e-32
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTER 447
            ++  DC+NAFN+ KR AI+ + +   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L   + T EN++    LV EL  +G+ +N  K+ A+PP  H+  PTER
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTER 656
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.160e-32
Identity = 63/153 (41.18%), Postives = 93/153 (60.78%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E PA  I+ MD+G+RR     +G+ QGDG+ P LFC  + PI+   R  ++ LGV L AY+DD+ L     T E ++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRL 685
[Close]
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.440e-31
Identity = 62/153 (40.52%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:    1 LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDTGKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLDDLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHN--PTEREI 453
            ++  DC+NAFN+ KR AI+ + A   P L  ++A+CY E  A  I+ MD+G+RR     +G+ QGDG+ P LF   + PI+   R  ++ LGV L AY+DD+ L     T EN++ I  LV EL  +G+ +N  K+ A+PP  H+  P ER +
Sbjct:   95 VVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRL 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6398.14202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.030e-3341.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE3.200e-3341.83Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLG6_9PHAE3.310e-3341.83Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE6.280e-3341.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMQ2_9PHAE8.670e-3341.83Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.810e-3241.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE2.680e-3239.87Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE2.740e-3241.72Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE5.160e-3241.18Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDD0_9PHAE3.440e-3140.52Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6398contigH-paniculata_contig6398:12085..12558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score64.3
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930740.2272704-CDS-H-paniculata_contig6398:12084..125581622930740.2272704-CDS-H-paniculata_contig6398:12084..12558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6398 12085..12558 +
1691481431.085958-CDS-H-paniculata_contig6398:12084..125581691481431.085958-CDS-H-paniculata_contig6398:12084..12558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6398 12085..12558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6398.14202.1prot_H-paniculata_contig6398.14202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6398 12085..12558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6398.14202.1

>prot_H-paniculata_contig6398.14202.1 ID=prot_H-paniculata_contig6398.14202.1|Name=mRNA_H-paniculata_contig6398.14202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
LITLDCTNAFNSVKRAAILEEIAIRTPGLTPFVAKCYGEKPADIIFQMDT
GKRRKKSSNTGIHQGDGLVPALFCMPVGPILRNCRELFEALGVKLLAYLD
DLVLAMGERTEENVRAIHFLVQELAGIGVHINNAKTKAVPPMNHNPTERE
ISVPASMG
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mRNA from alignment at H-paniculata_contig6398:12085..12558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6398.14202.1 ID=mRNA_H-paniculata_contig6398.14202.1|Name=mRNA_H-paniculata_contig6398.14202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig6398:12085..12558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCACCCTCGACTGTACCAACGCATTCAACTCCGTCAAGCGGGCGGC
GATTTTGGAAGAAATCGCAATCCGCACCCCAGGACTGACACCTTTCGTAG
CCAAATGCTATGGGGAGAAGCCGGCAGACATAATTTTTCAGATGGACACT
GGTAAACGCAGGAAAAAGTCTTCGAATACGGGAATCCACCAGGGCGACGG
ACTGGTACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTGCGCAATT
GCCGAGAACTATTCGAGGCTCTGGGGGTGAAGCTATTGGCCTACCTGGAC
GATCTGGTGCTGGCAATGGGGGAGCGTACGGAAGAAAACGTACGGGCGAT
CCATTTCCTCGTGCAAGAGCTAGCGGGCATAGGAGTGCACATTAACAACG
CCAAGACGAAGGCGGTGCCCCCAATGAACCACAACCCCACCGAAAGGGAG
ATCTCTGTGCCGGCGTCGATGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6398:12085..12558+

>mRNA_H-paniculata_contig6398.14202.1 ID=mRNA_H-paniculata_contig6398.14202.1|Name=mRNA_H-paniculata_contig6398.14202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig6398:12085..12558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATCACCCTCGACTGTACCAACGCATTCAACTCCGTCAAGCGGGCGGC
GATTTTGGAAGAAATCGCAATCCGCACCCCAGGACTGACACCTTTCGTAG
CCAAATGCTATGGGGAGAAGCCGGCAGACATAATTTTTCAGATGGACACT
GGTAAACGCAGGAAAAAGTCTTCGAATACGGGAATCCACCAGGGCGACGG
ACTGGTACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTGCGCAATT
GCCGAGAACTATTCGAGGCTCTGGGGGTGAAGCTATTGGCCTACCTGGAC
GATCTGGTGCTGGCAATGGGGGAGCGTACGGAAGAAAACGTACGGGCGAT
CCATTTCCTCGTGCAAGAGCTAGCGGGCATAGGAGTGCACATTAACAACG
CCAAGACGAAGGCGGTGCCCCCAATGAACCACAACCCCACCGAAAGGGAG
ATCTCTGTGCCGGCGTCGATGGGTCTTATCACCCTCGACTGTACCAACGC
ATTCAACTCCGTCAAGCGGGCGGCGATTTTGGAAGAAATCGCAATCCGCA
CCCCAGGACTGACACCTTTCGTAGCCAAATGCTATGGGGAGAAGCCGGCA
GACATAATTTTTCAGATGGACACTGGTAAACGCAGGAAAAAGTCTTCGAA
TACGGGAATCCACCAGGGCGACGGACTGGTACCCGCCCTCTTCTGCATGC
CCGTGGGACCGATCTTGCGCAATTGCCGAGAACTATTCGAGGCTCTGGGG
GTGAAGCTATTGGCCTACCTGGACGATCTGGTGCTGGCAATGGGGGAGCG
TACGGAAGAAAACGTACGGGCGATCCATTTCCTCGTGCAAGAGCTAGCGG
GCATAGGAGTGCACATTAACAACGCCAAGACGAAGGCGGTGCCCCCAATG
AACCACAACCCCACCGAAAGGGAGATCTCTGTGCCGGCGTCGATGGGT
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