mRNA_H-paniculata_contig63240.14118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63240.14118.1
Unique NamemRNA_H-paniculata_contig63240.14118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 124 bits (311), Expect = 9.500e-33
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            +A DV+ RKSTTGYVF +  GAI+WCSR+QQ  + S+TEAEYVAA E  KE + LR LL  I      +  L+ D +SAI L K    + RTKHI VR+H I+E  + G + ++YV++ DQLADI
Sbjct:  109 YASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADI 233          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: UPI001EE6E994 (secreted RxLR effector protein 161-like n=1 Tax=Neodiprion lecontei TaxID=441921 RepID=UPI001EE6E994)

HSP 1 Score: 124 bits (310), Expect = 1.370e-32
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            +AED E R+STTGYVF+L GG I+W S++Q+LVT S+TEAEYV A    +E + LR LL  I + C  +T +F D +SAI L +    + RTKHI +R+H IRE + E  L ++YVQT  Q  DI
Sbjct:  104 YAEDAETRRSTTGYVFQLAGGPITWASQRQKLVTLSTTEAEYVVASVTSREAIWLRKLLLDIEYPCADATVIFVDNQSAIRLVRNPEFHKRTKHIDIRYHYIREKVVEKILKIEYVQTKQQKGDI 228          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 125 bits (315), Expect = 3.500e-32
Identity = 61/125 (48.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            WA +V DR+S +G+VFK+  GAISW S+KQ     SST+AEYVA     KE V L  L   I   C+  TTLF D +SA+ +++    + RTKHIG R H +RE + +G L LKY+ TGDQ+AD+
Sbjct:  261 WAGNVNDRRSISGFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 125 bits (314), Expect = 4.220e-32
Identity = 63/125 (50.40%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            +A DV+DRKST+GYVF L GGA+SW S+KQ +VT S+TEAE+VAA     + + LR +LG IG+     TTLF D  S I LSK    + R+KHI VR++ +R+ + E  + LK+  T DQL+DI
Sbjct:  228 YAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDI 352          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 124 bits (312), Expect = 4.710e-32
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            +A D +DRKST+G+ F   GGA+SW S+KQ +VT S+TEAEYVAA     + V +R +L  IGFG    T LF D  SAI LSK    + R+KHI VR+H +RE + EG ++ +Y  T +QLADI
Sbjct:  196 YAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADI 320          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 122 bits (307), Expect = 7.680e-32
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSI------GFGCRRSTTLF-EDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            WA D  DR+ST+ YVFKL GGAISWCSRKQQ +  SSTEAEYVA     KE + L  LL  +          R    L   D +SA+ L+K S  + RTKHI VR H IR+ +  G LT++YV TGDQ+AD+
Sbjct:  133 WAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADV 264          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 121 bits (304), Expect = 2.290e-31
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIG-FGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            WA D+E R+ST+GYVF +NGG ISW S+KQ+ V  SSTEAEY+A  E  KE V L+  LG +G      +  +FED + +I L+K    + RTKHI +R+H +RE +  G + L+Y  T D LAD+
Sbjct:  110 WAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLKVFLGELGEMTSDEAIKMFEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVESGEVILEYCSTQDMLADM 235          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 118 bits (296), Expect = 2.400e-31
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIG-FGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            WA D+E R+ST+GY F +NGG ISW S+KQ+ V  SSTEAEY+A  E  +E V L+  L  +G      +  ++ED + +I L+K    + RTKHI +R+H +RE + +G + L+YV T D LAD+
Sbjct:   33 WAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 158          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: UPI000D3F8D86 (Ty1/Copia family ribonuclease HI n=1 Tax=Acinetobacter nosocomialis TaxID=106654 RepID=UPI000D3F8D86)

HSP 1 Score: 118 bits (296), Expect = 5.370e-31
Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIG-FGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            WA D+E R+ST+GY F +NGG ISW S+KQ+ V  SSTEAEY+A  E  +E + L+  L  IG    + +  ++ED + +I L+K    + RTKHI +R+H +RE + +G + L+Y  T D LAD+
Sbjct:   37 WAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADL 162          
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901)

HSP 1 Score: 118 bits (296), Expect = 8.070e-31
Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    1 WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGKETV*LRGLLGSIGFGCRRSTTLFEDTKSAITLSKGSGAYCRTKHIGVRWHGIREWIREGALTLKYVQTGDQLADI 375
            +AED+E R+STTGYVF L  GA++W +++Q++VT S+TEAEYVAA    KE + LR LL  +   C R+T +F D +S + L + S  + RTKHI VR H IRE +  G +  K V T  Q AD+
Sbjct:   67 FAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADL 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63240.14118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1N3K4_PHOPY9.500e-3351.20Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
UPI001EE6E9941.370e-3250.40secreted RxLR effector protein 161-like n=1 Tax=Ne... [more]
A0A4S4L116_9AGAM3.500e-3248.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JBX5_9BRAS4.220e-3250.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0006A737CF4.710e-3250.40uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A060SU91_PYCCI7.680e-3250.76Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A090C2V0_HYAAE2.290e-3147.62RxLR effector candidate protein (Fragment) n=3 Tax... [more]
H3G5T8_PHYRM2.400e-3145.24Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
UPI000D3F8D865.370e-3144.44Ty1/Copia family ribonuclease HI n=1 Tax=Acinetoba... [more]
UPI00193C89018.070e-3148.00secreted RxLR effector protein 161-like n=1 Tax=So... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63240contigH-paniculata_contig63240:1..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score71.2
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog7070.TC004282-PA
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.2956412-CDS-H-paniculata_contig63240:0..1621622930729.2956412-CDS-H-paniculata_contig63240:0..162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63240 1..162 +
1691481426.0673249-CDS-H-paniculata_contig63240:0..1621691481426.0673249-CDS-H-paniculata_contig63240:0..162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63240 1..162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.3091223-UTR-H-paniculata_contig63240:162..3751622930729.3091223-UTR-H-paniculata_contig63240:162..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig63240 163..375 +
1691481426.0814555-UTR-H-paniculata_contig63240:162..3751691481426.0814555-UTR-H-paniculata_contig63240:162..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig63240 163..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63240.14118.1prot_H-paniculata_contig63240.14118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63240 1..162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63240.14118.1

>prot_H-paniculata_contig63240.14118.1 ID=prot_H-paniculata_contig63240.14118.1|Name=mRNA_H-paniculata_contig63240.14118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
WAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEAEYVAAREPGK
ETV*
back to top

mRNA from alignment at H-paniculata_contig63240:1..375+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63240.14118.1 ID=mRNA_H-paniculata_contig63240.14118.1|Name=mRNA_H-paniculata_contig63240.14118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig63240:1..375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGTTACGTATTCAA ACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCA CGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAAGAGAACCGGGGAAG GAGACGGTATAACTTAGGGGGCTACTAGGATCGATAGGTTTCGGATGCAG GAGGAGCACGACATTGTTTGAGGACACTAAATCAGCTATTACTCTCAGTA AGGGATCTGGCGCATACTGCAGGACAAAGCACATCGGAGTGCGCTGGCAC GGAATTCGAGAGTGGATTCGGGAAGGAGCATTGACGTTGAAATACGTGCA GACCGGCGACCAACTTGCTGACATT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig63240:1..375+

>mRNA_H-paniculata_contig63240.14118.1 ID=mRNA_H-paniculata_contig63240.14118.1|Name=mRNA_H-paniculata_contig63240.14118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig63240:1..375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGTTACGTATTCAA
ACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCA
CGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAAGAGAACCGGGGAAG
GAGACGGTATAATGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGG
TTACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGC
AACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAAGA
GAACCGGGGAAGGAGACGGTATAA
back to top