mRNA_H-paniculata_contig58119.13412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58119.13412.1
Unique NamemRNA_H-paniculata_contig58119.13412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 54.3 bits (129), Expect = 1.760e-7
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   76 EMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIHSRKLRPLHPQRPAQKW 297
            E + L EN +W  V  PK++ VV +  ++KRKIGE+G+VE+YK R +A G       +S+K    H ++ A ++
Sbjct:    4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQG-------YSQKFNMNHARKNASRY 70          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151SIJ2_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SIJ2_CAJCA)

HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7
Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIHSRKL 261
            E W++  +VE+Q + +NG W     PK +  +    +YK K+ E G+++K+K R +  G  Q  G+  RK+
Sbjct:   37 EKWKKAMDVEIQAIEKNGTWELTDLPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYRKI 107          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 53.5 bits (127), Expect = 1.570e-6
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    7 EPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            EP     A +S E + W+   E EM+ L  N ++  V  PKNK V+ +  I++RKI  DG VE+YK R +A    Q  G+
Sbjct:    5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGL 84          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A4Y1RRK6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RRK6_PRUDU)

HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   70 EVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            +VE++ + +NG W  V  PK +  V    IYK K+ E G+V+KYK R +A G  Q  GI
Sbjct:    2 DVEIKSIEKNGTWELVDLPKGEKTVGVKWIYKTKLNEKGEVDKYKARLVAKGYTQEHGI 60          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151T998_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T998_CAJCA)

HSP 1 Score: 51.2 bits (121), Expect = 2.550e-6
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   70 EVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            ++E++ + +NG W  + RPK   VV    +YK K+ E G+V+K+K R +  G  Q  GI
Sbjct:    2 DIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGEVDKFKARLVVKGYAQQYGI 60          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151SRV2_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRV2_CAJCA)

HSP 1 Score: 50.8 bits (120), Expect = 3.220e-6
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   55 WQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            W++  EVE++ + +N  W  V  PKN   +    IYK K+ E G+V+K+K R +A G  Q  GI
Sbjct:    7 WRQTMEVEIKAIEKNHTWELVELPKNAKKIGVKWIYKTKLNEHGEVDKFKARLVAKGYSQEHGI 70          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 4.420e-6
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 PVEPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            P  PK  + A +SPE   W    ++E+  +++ G+WT V  P N  ++ T+ ++++K   +G + K+K R  A G+ Q +GI
Sbjct:  853 PSVPKTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCAQGSAQQEGI 934          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5N6NBX2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX2_9ASTR)

HSP 1 Score: 52.8 bits (125), Expect = 7.730e-6
Identity = 25/64 (39.06%), Postives = 36/64 (56.25%), Query Frame = 1
Query:   55 WQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            WQ   + E+Q +++N  W  V  P+N+  +    IYK K+ E GQV+KYK R +  G  Q  GI
Sbjct:  210 WQDAMDCEIQSILKNDTWELVDAPQNQKTIGVKWIYKTKLNEKGQVDKYKARLVVKGYKQKYGI 273          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5N6P988_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P988_9ASTR)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-5
Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIH 249
            E W +  E E++ +  NG W  V  P+  + +    IYK K+ E G+++K+K R +  G  Q KGI+
Sbjct:  258 EKWMQAMEAEIKAIERNGTWELVDLPEGSIPIGVKWIYKTKLNEKGEIDKFKARLVVKGYAQQKGIN 324          
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5A7TEE6_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TEE6_CUCME)

HSP 1 Score: 50.1 bits (118), Expect = 1.100e-5
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 1
Query:   49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
            + W     +EM+ +  N IW  + R      V    IYKRK GEDGQV+ ++ R +A G  Q++G+
Sbjct:   31 DEWINAMNLEMESMYFNSIWDLIDRHDGVKPVGCKWIYKRKRGEDGQVQTFRARLVAKGYTQVEGV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7TFD5_AMPQE1.760e-737.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SIJ2_CAJCA5.100e-732.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7VXK3_AMPQE1.570e-638.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y1RRK6_PRUDU1.770e-642.37Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A151T998_CAJCA2.550e-637.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SRV2_CAJCA3.220e-639.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N5SCW9_9BASI4.420e-631.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A5N6NBX2_9ASTR7.730e-639.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P988_9ASTR1.090e-534.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5A7TEE6_CUCME1.100e-536.36Gag/pol protein n=2 Tax=Cucumis melo var. makuwa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58119contigH-paniculata_contig58119:690..986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.9
Seed ortholog evalue4.7e-08
Seed eggNOG ortholog176275.XP_008602273.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.040702-CDS-H-paniculata_contig58119:689..9861622930632.040702-CDS-H-paniculata_contig58119:689..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58119 690..986 +
1691481381.2818515-CDS-H-paniculata_contig58119:689..9861691481381.2818515-CDS-H-paniculata_contig58119:689..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58119 690..986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58119.13412.1prot_H-paniculata_contig58119.13412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58119 690..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58119.13412.1

>prot_H-paniculata_contig58119.13412.1 ID=prot_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
PVEPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVST
MMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIHSRKLRPLHPQRPAQKW
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mRNA from alignment at H-paniculata_contig58119:690..986+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58119.13412.1 ID=mRNA_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig58119:690..986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTGGAACCCAAGAAATCACAGGGGGCGCAGGCGTCGCCGGAGTGGGA ACACTGGCAAAGAGAGGAGGAAGTCGAGATGCAAGGCCTCATCGAAAACG GGATTTGGACTCAAGTGGGGCGCCCGAAGAACAAGCTGGTCGTAAGCACG ATGATGATCTACAAAAGGAAAATCGGCGAGGACGGACAAGTGGAGAAATA TAAGTGCCGCCAGATCGCCAACGGGAACTGTCAGATCAAGGGCATCCACT CCAGGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig58119:690..986+

>mRNA_H-paniculata_contig58119.13412.1 ID=mRNA_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig58119:690..986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTGGAACCCAAGAAATCACAGGGGGCGCAGGCGTCGCCGGAGTGGGA
ACACTGGCAAAGAGAGGAGGAAGTCGAGATGCAAGGCCTCATCGAAAACG
GGATTTGGACTCAAGTGGGGCGCCCGAAGAACAAGCTGGTCGTAAGCACG
ATGATGATCTACAAAAGGAAAATCGGCGAGGACGGACAAGTGGAGAAATA
TAAGTGCCGCCAGATCGCCAACGGGAACTGTCAGATCAAGGGCATCCACT
CCAGGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAATGGCCC
GTGGAACCCAAGAAATCACAGGGGGCGCAGGCGTCGCCGGAGTGGGAACA
CTGGCAAAGAGAGGAGGAAGTCGAGATGCAAGGCCTCATCGAAAACGGGA
TTTGGACTCAAGTGGGGCGCCCGAAGAACAAGCTGGTCGTAAGCACGATG
ATGATCTACAAAAGGAAAATCGGCGAGGACGGACAAGTGGAGAAATATAA
GTGCCGCCAGATCGCCAACGGGAACTGTCAGATCAAGGGCATCCACTCCA
GGAAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAATGG
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