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Homology
BLAST of mRNA_H-paniculata_contig5775.13363.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.440e-54 Identity = 128/234 (54.70%), Postives = 149/234 (63.68%), Query Frame = 2
Query: 2 AGTCGFV-APSTALFRPDVNYRPYRTRIL--------RMTRSTEPKDTPYSGLPANWRAPLQRGDSVKSDEEPATVQQEERRIDMDG-GRIELQEVRTSAQVLEEVQRVGIGGVGDRRVLRKPDAPPDIGRFQTDSQRRRSLPLSKLKRVKPKRRRLIDEEEGELRPLVAKTDRESVLRGEDYWIDYREVDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGI 673
AG CGFV AP + R RM S E + TPYS LPA+WRAPL + E QEE ++ +G G E +RT A+VL+E RV R R APP + QT++QRRR+LPLSKLKRVKPK+R +EEEGE+RPLV KTDRESVLRGEDYWIDYREVD K A +EA+ KAP+PDQFAQSKM+AEIVNPYKQNWILAISL I
Sbjct: 33 AGACGFVVAPGGGAAMLQRSRRSVXXXXXXXXXXSAPRMALSEEAEATPYSELPADWRAPLPPREFKPKKGET----QEEEGVEGEGVGGAEGDGLRTPAEVLQEATRV----TPKRMQGRMAQAPPGLESLQTENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAI 258
BLAST of mRNA_H-paniculata_contig5775.13363.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC) HSP 1 Score: 54.3 bits (129), Expect = 3.740e-5 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 2
Query: 491 RESVLRGEDYWIDYREVDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGI 673
R++V +G DYWID E+++ AR+ K + +Q K++AEIV PYKQNWI SL I
Sbjct: 45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTI 105
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 199.9 |
| Seed ortholog evalue | 1.3e-48 |
| Seed eggNOG ortholog | 2880.D7FR40 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2D131@1,2SGIC@2759 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_003600.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 2327 |
| Cds size | 702 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5775.13363.1 >prot_H-paniculata_contig5775.13363.1 ID=prot_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MTRSTEPKDTPYSGLPANWRAPLQRGDSVKSDEEPATVQQEERRIDMDGG
RIELQEVRTSAQVLEEVQRVGIGGVGDRRVLRKPDAPPDIGRFQTDSQRR
RSLPLSKLKRVKPKRRRLIDEEEGELRPLVAKTDRESVLRGEDYWIDYRE
VDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGISECTT
KSVRANLSRSFLSPSDVSEVVAVTPTSAYLVGL* back to topmRNA from alignment at H-paniculata_contig5775:1676..5731- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5775.13363.1 ID=mRNA_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4056bp|location=Sequence derived from alignment at H-paniculata_contig5775:1676..5731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGGTACGTGTGGATTCGTCGCACCCTCTACCGCATTGTTTCGCCCAG
ACGTCAACTATCGTCCATATCGTACGCGTATACTGCGGATGACCAGGAGC
ACAGAGCCCAAAGGTAGGGTGCAATATGGAGTACGAATTGAGACAAGAAG
GGCACTCTCCGATAACTTCGGCGCCGTGGTTTCCGCAAAGATAAATGGGA
CGGTTTCAACAAGGATTAGATTGGCAGTGATCCGTGTTGATTGACCCTGC
AATAATTGCAGCCAGTCTATGTAATAGCTCAGTTCTGTGTGTTGGTAAAC
ATGTAACAGGCAAAGGCAGTTAAGCACGGTAGATCATTCTGTTCGCGTGT
TCGTTCTTTCTCCCCGCACTTCCAACGCGCTTGCTTGCAGCAGACACGCC
CTACTCAGGCCTTCCCGCCAACTGGCGAGCACCATTGCAACGAGGAGATT
CTGTGAAATCAGATGAGGAACCGGCGACGGTTCAACAGGAGGAGCGCCGG
ATAGACATGGATGGTGGACGCATAGAGCTCCAGGAAGTGCGCACTTCTGC
CCAGGTGCTCGAGGAAGTACAACGTGTGGGTATTGGGGGTGTTGGTGACC
GACGAGTGTTGCGGAAACCGGACGCGCCGCCTGACATCGGGAGGTTCCAG
ACAGATAGCCAACGTCGGAGAAGCCTTCCCCTCAGTAAGCTTAAGCGCGT
CAAACCCAAGAGGCGAAGGTAAGACTTTTTGCGTGGTAGGACTGGCAAGA
ACCTTGAGGTTTCGCGTAAAAGAGTTACACATATTTTTCATAATTTAGCC
TTTTGGGACATAAACTTACGACATTTGTTCAAGTTTACATAATCACATCG
AAATGGCGATATCTCTATCTCACATCCTTGTCATACATAGCCAGTCATAA
AGTACGTGTTTAGAGTGTCATGTGTTTAGCGAAACGGTGAGATGAGCCGA
TGAAACGACCACAAAATCATGAAGGTCGACCCAACATCTTCGCGATCAAC
GGGAATTATCTAAAATTGTCTCGTACAATCTACTGTGATGGGACAAAAAC
GAAATATATATATTTAAGTGGCAGATTGCAGATCTGCATGTTGAGCGCAG
ACAGGCATCGGCAGGGTGCGGGTAGCGTGACAGCAACTGGGCGAGCAGTG
AGCAGGGGTCTTGGCTTGTAGGGGGATGTTCGGGTGTTGTATGTACGTAT
GTTGAAATGTGTAACTGAGAAGTGAAGAAGCCTTTGGTTGGGGCCTTCTA
GAGAATAAGATGGAAGCGACACAACATCATGGGACTTTTGTTGAAACAGT
ATCGTAAACAGATCATATTCTGACAGCTTTGGTCATGAAGGCGTCATGAA
TCACCCTAATAATGTGTATCATAAATGCGTCATACTTCCGCGCTTTCTTA
TCATGAGTGCGTCGTCACCCACGAATAAACCGTTAAATGAAGAAAAAACT
GTCATGAATGTTTAGAGCAGCTAAATGGTGGGAAAGCGTACACACGTCGG
ATGGATCGGATCATACACAGATCATACCCGTCATTTTTATGGGTATATCG
TCTGATCCGTACACGGTGATTTTTCCGTGCAAACCGTCCCAGGCTTTCGG
AGTGGCCTGGTAGTGGTCTCGGGTTCGTCAAACCTAATTACGTCCCTCTA
GCTTGATCGGTTCACACTGATTGTATTTTCTGCTGAATGCTGCTTAATCA
TGAGTGAAGGCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAG
CCAAAACCGATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGAC
TACCGCGAGGTGACTGGGAGCACTCGACACACATGATCAAACAGTCGATG
CGACGATTTTGCATCGCACGTAAAAAGAGGAATAGCATAAACTTCGGGTG
TTGAGATCACTGTGTGTTTCGTTTGTCCAGAAAAAAGAGCCTTGCAACTG
TTGGCAATACTCAGCTCGTTTGGTGGGTTGAATGCTACCCTATGCTGATT
AACTGTTGGCAACAAAGGTTGTTTGCACTTGTGTTGGATCTCCATCCCCC
GTCACGCCCTCTGGTGATTTGTAGAGGAAATTTGTCGTAGCCAGTACAAA
AGTGAGAACTGAGGGTCACGAGCCTGCAGTTTTTGCCTTTGTGGCTACAA
TACTTGGCCCGGGTTGCGTCTGTTGCAAGACTGAAACTATCTCAACGCGT
CTTGTCTCTGCTGAACGTTGCCCTTCATCCGACCAACCCAAAATATGCTT
AACCTAAATACCCACAGGTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGG
AGGAAAGCTCCGTCCCCTGACCAGTTTGCCCAATCCAAAATGAGGGCAGA
GATCGTCAACCCCTACAAGCAAAACTGGATCCTGGCCATTTCCCTTGGTA
TCAGTGAGTGTACAACGAAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTC
CTCTCGCCATCTGATGTCTCAGAAGTTGTGGCAGTGACGCCCACATCTGC
ATATCTTGTTGGTCTGTGAGACGTGGGAACACCACAGTGTGCCTACAATA
GCGCGCGTCACTTCAATAACGGTTTGATTACAGGAGGCAAGCCAAATATA
GATGTTGCTACATTCATGAGGCTCTTTCGCCGTCGGCGTGGTCAATTCGA
TGTATAGTGACAGAAGTTTTATGGGTGCATTTCCACCCTATTGTGGTGAT
AAGACGTTGAATCAACCTTGCGCTTGATGGGTCGTTGTGTTGATTGCTCA
CGTGAGTCAAAAGGTTCGCGGAGTGTTCAACTTTTTGGACTCGGGTTTAT
CGTAGATATCTATGCCAATGGCACCGAGATGCGCACACAATTCTGTACCG
TGACCCTGTTCCTCAAGTGTTGTCAGATATATGTCGATTTAGACGAGCTA
AACCTTGTCCTCTCGTATATGCTAGGTTACAAACAGACGCTCTCTGCCAC
ATACAGCGCTGCGAATGCTCCACTTGTGCTACCACCCCCAAATTGACACC
GTGTATTACATCACTTAGGTCTCGAAAAGACCGCCAACCTTCTGGCATGA
CTTGCAGTTGAATCTAACCCTCCCTCCCCTTGAATATCCCCAACACTCCC
GCCTGTGCTGTTGCGCAGTGGCTATGGCAGGATTTATCAAGCTCAACCCT
GGGATTCTGGATGAATCTGTTATCACATTTCCCTCGGAGTTATGATTTTG
AGTCTTGCGGAAGAAGAAAATGTCGTATTCCTTGCTTGTCGTCATAGTGT
GGTGCTTGTTCGTGGATGATGCGTTTGGGTTGGATTTAATTTAAGCGTTT
TTTTTGTCTACGTAACGCCTGACAAGCAAACTTGAATGTGGTAAATAGAA
TGATTTCGTGTTTTTTTTTGTTGAACGAGATTGAATTGCAGAGACAGAGC
AAAGTACGCACATTATTTGCTGGTAGCTCCACCTATATATTTTGCTCGTG
CTGGGGGTGATGCGGTGTGATTATGTTTACGCTTGCGTTTCTATCTTGCC
AAACGTGCATATTATTAGTCGACACCCCGCAGTTGTAGTGTGGTAAGATG
ATACGGACGGGACTTTTTTACGGCCTGCCTCTCAGGAGTGTGGGGCTTTG
CATGTGTTTGCAGTGGTGCCTTGGGGAAAGGCAATGTAAGGTAGAGTCTC
ATTTTTTCTACTGGCAGATGAGCACAGGAAAAATATTGTAAAGGAGCAGT
CAGCGTAGAAGCGGGACAGGGTAGTGGTAAATAAGAAATGCAGCATTTTG
GCTTACGATCGAAGGCGTTTCTCGCCCTTTGGTTGAATTTGACTGTTATT
ACTGCGTGCCTAGAGGGGCACTCTGTGCCATGTGTGTCTCCTATTGCAGC
CACACACACGCCGTTCAACACAATACATCAACCCATTTAGAATATTACTT
CTGACAGTCAAAACACACATTCGCTAACGGTCAGTGTGTAATGACGAATA
CGTCGATAGAGTGCCACAGCCAGGGGGCAAAGGGGGGCGTTTTTTCATGG
CGTGTGGGGTATATATCAGATTTATGATTATCAAGCCCTCCACAGCTGGT
TAGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5775:1676..5731- >mRNA_H-paniculata_contig5775.13363.1 ID=mRNA_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig5775:1676..5731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGAGCACAGAGCCCAAAGATGACCAGGAGCACAGAGCCCAAAG
ACACGCCCTACTCAGGCCTTCCCGCCAACTGGCGAGCACCATTGCAACGA
GGAGATTCTGTGAAATCAGATGAGGAACCGGCGACGGTTCAACAGGAGGA
GCGCCGGATAGACATGGATGGTGGACGCATAGAGCTCCAGGAAGTGCGCA
CTTCTGCCCAGGTGCTCGAGGAAGTACAACGTGTGGGTATTGGGGGTGTT
GGTGACCGACGAGTGTTGCGGAAACCGGACGCGCCGCCTGACATCGGGAG
GTTCCAGACAGATAGCCAACGTCGGAGAAGCCTTCCCCTCAGTAAGCTTA
AGCGCGTCAAACCCAAGAGGCGAAGACACGCCCTACTCAGGCCTTCCCGC
CAACTGGCGAGCACCATTGCAACGAGGAGATTCTGTGAAATCAGATGAGG
AACCGGCGACGGTTCAACAGGAGGAGCGCCGGATAGACATGGATGGTGGA
CGCATAGAGCTCCAGGAAGTGCGCACTTCTGCCCAGGTGCTCGAGGAAGT
ACAACGTGTGGGTATTGGGGGTGTTGGTGACCGACGAGTGTTGCGGAAAC
CGGACGCGCCGCCTGACATCGGGAGGTTCCAGACAGATAGCCAACGTCGG
AGAAGCCTTCCCCTCAGTAAGCTTAAGCGCGTCAAACCCAAGAGGCGAAG
GCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAGCCAAAACCG
ATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGACTACCGCGAG
GCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAGCCAAAACCG
ATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGACTACCGCGAG
GTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGGAGGAAAGCTCCGTCCCC
TGACCAGTTTGCCCAATCCAAAATGAGGGCAGAGATCGTCAACCCCTACA
AGCAAAACTGGATCCTGGCCATTTCCCTTGGTATCAGTGAGTGTACAACG
AAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTCCTCTCGCCATCTGATGT
CTCAGAAGTTGTGGCAGTGACGCCCACATCTGCATATCTTGTTGGTCTGT
GAGTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGGAGGAAAGCTCCGTCC
CCTGACCAGTTTGCCCAATCCAAAATGAGGGCAGAGATCGTCAACCCCTA
CAAGCAAAACTGGATCCTGGCCATTTCCCTTGGTATCAGTGAGTGTACAA
CGAAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTCCTCTCGCCATCTGAT
GTCTCAGAAGTTGTGGCAGTGACGCCCACATCTGCATATCTTGTTGGTCT
GTGA back to top
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