mRNA_H-paniculata_contig571.13259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig571.13259.1
Unique NamemRNA_H-paniculata_contig571.13259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig571.13259.1 vs. uniprot
Match: A0A6H5JZH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZH0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.080e-12
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  217 VSVGASGEGGLYYLNAAELAAIESKKTREKLKNKAERVENFHRKVVKRVAAERRTADA-AAGRRKPRHMYPTA------GSGIATQGLLVHGEDPSLWPASFSQNEALHYHQPVRVKGERGDVASLLNADIEARRALAAYR 618
            V V A+   G   L+AA+LA+ ES+KTR+KLK KA+ V  FHRKVV+R+A E+R A A   G R  +    +A      G  +  +GL       +    +  ++EA ++ Q ++V G RG   SL +AD E+R ALAAYR
Sbjct:   35 VVVAAADNDGPCGLSAADLASFESEKTRDKLKLKADHVAKFHRKVVRRLATEKRAAHAHTRGGRAVKAQIGSADSFANFGDRLEPRGLAPREAQGTPREHTLPRDEAPNF-QAIKVIGVRGHKGSLADADTESRMALAAYR 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig571.13259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZH0_9PHAE4.080e-1240.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig571contigH-paniculata_contig571:29600..33357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003330.1
Exons3
Model size2043
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig571.13259.1prot_H-paniculata_contig571.13259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig571 30992..33267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930613.1832469-UTR-H-paniculata_contig571:29599..309911622930613.1832469-UTR-H-paniculata_contig571:29599..30991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig571 29600..30991 -
1691481372.6860688-UTR-H-paniculata_contig571:29599..309911691481372.6860688-UTR-H-paniculata_contig571:29599..30991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig571 29600..30991 -
1622930613.245982-UTR-H-paniculata_contig571:33267..333571622930613.245982-UTR-H-paniculata_contig571:33267..33357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig571 33268..33357 -
1691481372.7282028-UTR-H-paniculata_contig571:33267..333571691481372.7282028-UTR-H-paniculata_contig571:33267..33357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig571 33268..33357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930613.2029564-CDS-H-paniculata_contig571:30991..311291622930613.2029564-CDS-H-paniculata_contig571:30991..31129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 30992..31129 -
1691481372.698485-CDS-H-paniculata_contig571:30991..311291691481372.698485-CDS-H-paniculata_contig571:30991..31129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 30992..31129 -
1622930613.2162056-CDS-H-paniculata_contig571:31454..316401622930613.2162056-CDS-H-paniculata_contig571:31454..31640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 31455..31640 -
1691481372.708087-CDS-H-paniculata_contig571:31454..316401691481372.708087-CDS-H-paniculata_contig571:31454..31640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 31455..31640 -
1622930613.228852-CDS-H-paniculata_contig571:33030..332671622930613.228852-CDS-H-paniculata_contig571:33030..33267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 33031..33267 -
1691481372.7159984-CDS-H-paniculata_contig571:33030..332671691481372.7159984-CDS-H-paniculata_contig571:33030..33267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig571 33031..33267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig571.13259.1

>prot_H-paniculata_contig571.13259.1 ID=prot_H-paniculata_contig571.13259.1|Name=mRNA_H-paniculata_contig571.13259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MSRMESVRKGDLLLHDDIQFGSSPHIIHATPPDLAPASPFSEVSVGASGE
GGLYYLNAAELAAIESKKTREKLKNKAERVENFHRKVVKRVAAERRTADA
AAGRRKPRHMYPTAGSGIATQGLLVHGEDPSLWPASFSQNEALHYHQPVR
VKGERGDVASLLNADIEARRALAAYRVSSDAETGQG*
back to top

mRNA from alignment at H-paniculata_contig571:29600..33357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig571.13259.1 ID=mRNA_H-paniculata_contig571.13259.1|Name=mRNA_H-paniculata_contig571.13259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3758bp|location=Sequence derived from alignment at H-paniculata_contig571:29600..33357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCAACGCCCGTTGTCTCTATCCCCCAACGCCTATCTCAGCTGTTTCTA
CTCCGCCTTCAGCCTTCATACCTCAGTCGTGACCGCCATCATGTCTCGCA
TGGAGTCCGTTCGAAAAGGCGACCTGTTACTGCACGATGATATTCAATTT
GGTAGCTCTCCACATATAATTCATGCCACACCCCCAGATCTGGCACCGGC
TTCGCCGTTCTCTGAAGTTTCCGTTGGTGCCTCGGGCGAGGGAGGGTTGT
ATTATCTCAATGCGGCGGAGTTGGCGGCAATTGAGAGCAAGAAGACGAGG
GAGAAGCTCAAGAACAAAGCCGAACGTGTGAGTTGTTGCTGTAGTTGTTT
GGCCATGCCGGTACGTTTTTGGTCGAGCTATATGTTGCAGATTGGGGGTA
TACCTGTGTATAGATGGAGCCTATATACTTGCGGCGACTGAGAAGCAGCA
AACCTCGTCACATATATTGGCAGCAAAACAATTCGCTGGAGTATAGCAGT
GCAGTACACCGTAGGTAGTTTTTACAGCACAGGGAATGTACAACAATCTT
GGTTTGGTAGTAGTAGTAATACTAGTAGAACGTCTACCGGTATTTTGAAA
TTTGAAAAGAATAGTCTAACGGCCGACCACTACATTTCAAAACAAAACTG
ATCGACAATGGATCCCACAACAGCACTGCGTCGGCCCATGATCAACGCAC
AACTCGTTTCTGCTGCACTGGGCTGTTTTATATCTTCAAGTCGACTTAAT
ACAAAATATTTTTGACCTGTTAGCGCAACCTTTCTAATCGGCCTTTCGTC
CGCACGTGTTTTTCAGTTTTGAAGAAAGAGACCAGCCCGCAGGTGTTTCT
AATCGTTGAGTTCTATCCCTTTTGCCGCACATTTTCAGTGACCCGACCCT
CCTCCATCCCAACCCTTGTTGTAGGTTCTATGCGATATCAACATCAAACA
TCCTTGGCGCCGAGAGCTCTCCAATCGCACTTCTATTTCGGCGCGTTTCA
ACACCGTTGGCGCGAACAGCATAATGTACTTGATTGGGGTTCAATCTTCT
CCGACTTGATGGAGAGCCGATGTTTTGTGTGCCTTGCCACTAAACGAGAC
ATAGGCACGTTTTTGTATTCTAAACTCCATGTGAACTGCTATAGCACCTC
TAAGACAAACTGTCTCCAGTCAGGCAAGGCTCGGGTTATGCAGCAGAGTA
TGGGCTGTCGTCCCAGCTAGCGCATATGTTGTGGGATTCTCTGTAGCTAT
TAGTTTCGCTCATGTGTTCGAGCCGTGCACCTCTTCTAGCCCAACCTGCC
TGTTTGTTGAAAGACTCAATCAACACACAACCCATTCACGCCGCATGTGT
ATGCCCTGTGTCGTCAATATAGCACACTCTTCTGTTGTGCTTCTAGATGA
AGATTGACAACATATTTTACCCTTTTCGATTTCAATTGCGATTAAACCCG
TTTCGTTGAATACGCCGTCTTCTCAATTCCGATTTCAAATTAAATTCCAT
GTAGACAAAATGGAACGTGAAACTTGAGCCGCGCTTTTCATTTCTTTACC
CCCAGAGCCGTCTTGCGTTTCCCCTAGTCAGTGTCTCGACCGAAACGGTC
GATGAGGGTTATGCATTATTTTGTACCTTTTTCCCGTTTTTTTTGTTCGT
TTCGCTGTCTTCTGAGACCTGACACAAGCCTACTTCACTCACCGCGCTTA
CTACGTCGGAAGAACAGGTTGAGAATTTCCACCGAAAGGTCGTGAAGCGC
GTAGCTGCTGAACGGCGGACTGCAGATGCAGCCGCGGGTCGTAGAAAACC
ACGACACATGTATCCGACGGCCGGGTCTGGGATTGCTACGCAGGGGCTGT
TGGTTCACGGGGAGGATCCGTCACTTTGGCCAGCTTCTTTCTCACAGAAT
GAGGTGCGTTGAGCTACACATGGGCCAGGGTTTTGGCCTGCTATAAAGGG
TCGTTCTAGTTGATATCTGACCAGATCTAAGGTTCATTTGTCGATAGCCG
TGCCATGCTCTCGCTGGCAAGGAACAATCGATCCCTAGCGTTATTTTTAT
ACTTCTTGGGTACTTGATAAATGGGTGCAGAGCAGGCACGGTAGCAATGA
TTTAATATACGTGTATGTGTGCGTCTGGTCATCACACAATGCAGCTGTAG
ACATGAAAACATTGGACGTTCCCCTGATCGCTCTCTGGCGATGGTCGGCG
CATGTCATCCCGTTCATTTGCACTGCAGGCTCTTCACTATCATCAACCTG
TGCGGGTCAAAGGAGAACGGGGAGATGTGGCAAGCTTGTTGAATGCGGAC
ATCGAGGCGAGAAGAGCGCTAGCGGCCTACCGAGTATCATCGGATGCAGA
GACAGGGCAAGGATGAACCAAAGGACGCACGCACTTTACTCGAGTCGGCC
TGCTTCTCAGACGGCTCATGTTTATGTCTATCCCACCCATGTTATGTATG
TATGTTTTCGGTTCGAGAGGTGTGTTGTTTGAACGCCACGATGCTGCACT
AAATAGCTTTCTTCGACAAGTGGAACAACGGTGCTACACCATGTACAGCC
GGTACATTGGTTCGTTTCCTAGAGTCGTCCTGAGAGGTACGTATACTCTA
GGCATCCACATGGGGAAAAGCATCGCCTGTATTGATATATTTTGCGACGT
GTCCTGGGATTGATTTACTCCCCCCTTTGTTGGCGGTCGTGATCTTTGGA
TTGGTTGAAGCGGAACTCCGAATTATATCTGTACAGTTGGGTGGGGTTTG
GACTCGGCCCAGTCAGGATCCGCCCTCTTCTGCAAACTTTCTAGCACCAG
AAAATCAAGATAGCTAGTCGTGAGGAAAAAAGAGTTTCACGTGTTTGCAA
GTGCGTGGAAACCGCGCGGGGTGTCGGATGTAGGGAACAGCTTCATGATC
CCCACTGCGTAAATAAACGATCGTAAATACATAATCTTCAGATACCGTTG
TGAAACACAAAATCGCTTAGTGTAAGAATATCGCAGAAGAGCGGCCTGAG
AAGAGAAGCGTGTGGAGTGAGTGTTACGGTCTTGTACATTTTGCCGCGAT
ACGCTCGGCATGGACATATCTGGATGTTAAACTGACTTTATGCTATACTT
TATTTTTTCGTATTTATATTTAGGTGCCGTTATACTCTAGCGATTTTTTG
GTTAGTGATTATATATCTAGGTGTATTGTCTAGCTGATCCCAGGGGTCGA
AGTGAGGGGAATTTTTTACAATTTATATCTTCTAGTTCTTTGTCACGGAA
CCGAGAGAGGATCGCCCCTTGGAGCTTGCAGGGTGTTCTAGCCCAAAGTA
GCATTTGGGTTTTCAACACAAGAGGGTGGATCAAAGAATACGCATTTTTG
GTTTTGTGTGCATGTGGGTGTGACAAGTGGTCTGGGGTATATGCAATAGG
TTCATCTAGGCAAAGAGAGGCCGGGCGCAACCTTTTTTTGGTAACACAAA
GCAAAAATTTAGCATGCCGCAGGCGAGAAAAGGAGGTTTAGTCAAGCCTT
GGTCATACTTCGTAAATTGTGGATCAAGTTTGTAAAGAGTCGTGTTAGGT
CAAACCTTGGTCATGTTTATTCGCAAAACGTGGATTGTGTCTTACGGCAA
AATACATAGGCTTTCTAATTCGCAAAATGTGGAGCTAGTTATGTATGAAT
TTCATCGCATGGACATGATGTCTATCGAAAACTTCTTCATTTGGCCCCCC
ACTCTGCTTGCACCTCGTCGCACTCTGATAGTTTTTTTTTTTTCATTGAA
AGAAGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig571:29600..33357-

>mRNA_H-paniculata_contig571.13259.1 ID=mRNA_H-paniculata_contig571.13259.1|Name=mRNA_H-paniculata_contig571.13259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig571:29600..33357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCGCATGGAGTCCGTTCGAAAAGGCGACCTGTTACTGCACGATGA
TATTCAATTTGGTAGCTCTCCACATATAATTCATGCCACACCCCCAGATC
TGGCACCGGCTTCGCCGTTCTCTGAAGTTTCCGTTGGTGCCTCGGGCGAG
GGAGGGTTGTATTATCTCAATGCGGCGGAGTTGGCGGCAATTGAGAGCAA
GAAGACGAGGGAGAAGCTCAAGAACAAAGCCGAACGTATGTCTCGCATGG
AGTCCGTTCGAAAAGGCGACCTGTTACTGCACGATGATATTCAATTTGGT
AGCTCTCCACATATAATTCATGCCACACCCCCAGATCTGGCACCGGCTTC
GCCGTTCTCTGAAGTTTCCGTTGGTGCCTCGGGCGAGGGAGGGTTGTATT
ATCTCAATGCGGCGGAGTTGGCGGCAATTGAGAGCAAGAAGACGAGGGAG
AAGCTCAAGAACAAAGCCGAACGTGTTGAGAATTTCCACCGAAAGGTCGT
GAAGCGCGTAGCTGCTGAACGGCGGACTGCAGATGCAGCCGCGGGTCGTA
GAAAACCACGACACATGTATCCGACGGCCGGGTCTGGGATTGCTACGCAG
GGGCTGTTGGTTCACGGGGAGGATCCGTCACTTTGGCCAGCTTCTTTCTC
ACAGAATGAGGTTGAGAATTTCCACCGAAAGGTCGTGAAGCGCGTAGCTG
CTGAACGGCGGACTGCAGATGCAGCCGCGGGTCGTAGAAAACCACGACAC
ATGTATCCGACGGCCGGGTCTGGGATTGCTACGCAGGGGCTGTTGGTTCA
CGGGGAGGATCCGTCACTTTGGCCAGCTTCTTTCTCACAGAATGAGGCTC
TTCACTATCATCAACCTGTGCGGGTCAAAGGAGAACGGGGAGATGTGGCA
AGCTTGTTGAATGCGGACATCGAGGCGAGAAGAGCGCTAGCGGCCTACCG
AGTATCATCGGATGCAGAGACAGGGCAAGGATGAGCTCTTCACTATCATC
AACCTGTGCGGGTCAAAGGAGAACGGGGAGATGTGGCAAGCTTGTTGAAT
GCGGACATCGAGGCGAGAAGAGCGCTAGCGGCCTACCGAGTATCATCGGA
TGCAGAGACAGGGCAAGGATGA
back to top