mRNA_H-paniculata_contig5699.13242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5699.13242.1
Unique NamemRNA_H-paniculata_contig5699.13242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5699.13242.1 vs. uniprot
Match: D7FWG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.810e-26
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 3 
Query:  351 MGGSSSTPLSVTSG-------VRVTVKERYQPYLPPGTNLNAVINQEKIKLVHEHWSYIADEQDNKTSRCSTKQSRISKFYDAFYEKLFQEAPDTRDLFEGNMVRQSRALVKVCMFL 680
            MG  +S P  + +G       VRV VKERY  YLP   NL+A + +EK++LV  HW+ IA+E D          SRIS FYDAFYEKLF++AP T++LF+GNMVRQSRALVK+  +L
Sbjct:    1 MGVGASAPPPLPTGRQAEGVRVRVAVKERYLAYLPQYINLDAALTEEKVRLVANHWNLIAEEDDTGMQDAGLAPSRISVFYDAFYEKLFEKAPKTKNLFDGNMVRQSRALVKMVSWL 117
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BLAST of mRNA_H-paniculata_contig5699.13242.1 vs. uniprot
Match: A0A6H5JHL4_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.680e-10
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:  552 SRISKFYDAFYEKLFQEAPDTRDLFEGNMVRQSRALVKVCMFL 680
            SRIS FYDAFYEKLF++AP T+DLF+GNMVRQSRALVK+  +L
Sbjct:    9 SRISVFYDAFYEKLFEKAPKTKDLFDGNMVRQSRALVKMVSWL 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5699.13242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWG0_ECTSI2.810e-2652.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHL4_9PHAE1.680e-1076.74GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5699contigH-paniculata_contig5699:7293..13485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size680
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5699.13242.1prot_H-paniculata_contig5699.13242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5699 7643..13485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.0108259-UTR-H-paniculata_contig5699:7292..76421622930611.0108259-UTR-H-paniculata_contig5699:7292..7642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5699 7293..7642 +
1691481371.570501-UTR-H-paniculata_contig5699:7292..76421691481371.570501-UTR-H-paniculata_contig5699:7292..7642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5699 7293..7642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.0303614-CDS-H-paniculata_contig5699:7642..78071622930611.0303614-CDS-H-paniculata_contig5699:7642..7807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5699 7643..7807 +
1691481371.5826232-CDS-H-paniculata_contig5699:7642..78071691481371.5826232-CDS-H-paniculata_contig5699:7642..7807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5699 7643..7807 +
1622930611.0490618-CDS-H-paniculata_contig5699:13320..134851622930611.0490618-CDS-H-paniculata_contig5699:13320..13485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5699 13321..13485 +
1691481371.5920153-CDS-H-paniculata_contig5699:13320..134851691481371.5920153-CDS-H-paniculata_contig5699:13320..13485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5699 13321..13485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5699.13242.1

>prot_H-paniculata_contig5699.13242.1 ID=prot_H-paniculata_contig5699.13242.1|Name=mRNA_H-paniculata_contig5699.13242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MGGSSSTPLSVTSGVRVTVKERYQPYLPPGTNLNAVINQEKIKLVHEHWS
YIADEQDNKTSRCSTKQSRISKFYDAFYEKLFQEAPDTRDLFEGNMVRQS
RALVKVCMFL
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mRNA from alignment at H-paniculata_contig5699:7293..13485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5699.13242.1 ID=mRNA_H-paniculata_contig5699.13242.1|Name=mRNA_H-paniculata_contig5699.13242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6193bp|location=Sequence derived from alignment at H-paniculata_contig5699:7293..13485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACATCCACAAAACATGTCTACACATCTACTTCTGGCCGCTGCCCCACC
TACGGACCGACCCGAGCAGTTGCTTGCACTTCGCATGAGAGCTTTCGATT
GTCCAAGTGTACGCACACGAACAGGGACGCCAACACGTGCCTAGGCACAA
CGGACCTACGAACATTACCCTCTGTACATGGTGCTTCTGTCCCCAAGTCC
TAATTTTGTCTGTCGGGGGCTGATATTGAGGATCAGAGAGAGAGGGTTGG
CAATTGGCCGTCCAAAGCGCCATCAGCGCGGCTGGGCTGACTTGTCTCAT
CCTGTAACATCAATTTTGTATTAGAACTAGGGACATAAATACACACACAG
ATGGGAGGAAGTTCCAGCACGCCGCTCTCGGTGACCTCGGGCGTGCGGGT
GACGGTGAAGGAGCGGTACCAACCGTACTTACCACCGGGGACCAACCTGA
ACGCGGTAATCAACCAAGAGAAGATCAAGCTTGTGCATGAGCACTGGAGC
TATATCGCAGACGAGGTGGGGTATCTGGGGGGTCGGGGGGGGGGGGCTGT
TGTCTGTTGTGCTGGCAACGAAGAGACGAATAGGTAAGGGGCGGCGCCTA
TGGTGTAGCTGTTGGAGTTGCATACCGCAGCCTAAAGTGGGGTGTATGGT
ATGTGTGTTGGCGGGGGGAAAGCGTTAGCTCAGGTTTCCCCTTGGTCTCC
TGGGGATCCAAAAAAAACTGGTATGTGTGTTGCAGGCAAGAGATGCAAAT
ATGAGAGATGTCTCAAAAGACAGTACACACAAGACCTCTGCTGAGTAAAC
GTTCTCACCAGCTGCCTCCTGCAGGATGATACGCTTCATTATGGATTCGT
TGGCAAATTTCGGTGCCTGCTCGTCCGTTTGTCGTACTTGTTTTCACTCA
TCTATTTAAGCCCAATCCGGACTCTGATGACAACTTTGACAACCTGGTTA
TGCCACCCCCACGCTAGCAATTTCCTAGCCAGGGAGACTTCATTGCTCAT
GTTCCGAATGACGTACTACCAGCTCCAGCAGCTTGCTTTTTTGCACGTAC
ATGGGCCATGATGAAATAGGACTATGCTCAGGTAATTTGGTGTCCTGCAG
ACTGTACGCAGTTTCGCGAGAAATATAGAGTTTTTCGTAGGATAACGAAT
GTGAGGACAGGTTTTATTTTCCTTGCGAAAGCCAGCTAGGATCTACTTCA
CTTGCTTTTAGTATTGATCCATAGAGTCCTGGTTGCAGGGGGAAGTTCGT
CACCGGCGTCCAGTCTCCACTGCTCCTCCTTGACATCGGAAGTTAAGGTT
AGAGCGAGTCTTCAGCTCACACACTCTACGATTTTCCAGCGCACTTATAC
TCAGATGCACACCTCGAGACAAGCCCAACAGAAGGCTCTACACGTACGGG
CGCAGGGTTAGTGCTTGGGTTGGGTTCAGTTGGTCGGTGTGAAGTGTGGC
CTCCGAATACATAAAAATTCACCCCAGCAATGAATCGTGAACTGATCTCT
TCATTCATTTCGTCAGATGCCTTTGCCCTTCATACTTCCTATTTGCCCTA
GGCAAAGGGGCCCCACATCTTGCCCACATAGTGTGTATCGTGATGGCGTA
CTACCGTAAACATCTAGCGCGCGGCTGCTACTTCTGCTGCACTGAATAGT
ACGGGACTCTGTGGCATGTCACAAGTACTCCATACATCACAGCAGCAGTT
ATTGTTCACAGGTGTGGGTTATGAAGACGGGCGGCATGTGTGCGTGTCTT
TTAGGTCAATCTAAATGTGTGTGACTATTTTACCTACTGTAGGGAAATCT
GGACGTTGGTGTGTTTGGCATATCGATGTAAGAGAAATCACCTGAAATTT
GACTTGGCGGAGGTCTTAACATATCGATGTAAGAAAATCACCTGAAATTT
GACTTGGCGGAGGTCTCTGCACGCGACACATGCAGTTCCTTCTGGGGGTA
CAGAGTGTAGTCAATTTGACACAGTAAGTTGGGAACAGGCGCTCCCCACA
GACGCCAACAGCCCAAATCCTGCGTTTGTGCCATCTGGTACAGCGCCAGA
TAGCGATCGAGTAAATGGGGTATGCTGAATACATGCATGAGTGCACAAGT
CCCATCATCCTCTCGTCCGGGCTCTTGATCGTTACTGGAGGATAGTGTCT
GACGAATAGTCTTAAATGGTCACATGCTCTGTACTTGAGTTTAGAAATTG
ATGGGTTTTTATCAGTCATGATAAGTACACTAAGTGCACCCTCATTCGGG
TCGGGTTGTTTTGTGATTTTTAATTTTGACGTCGAAACTTCCCATCTATG
GCTGATGCTGACTGTCTGTTCGTGCCCATTTACAACTATATATTTGATTA
TGGGCACATCGAATTCTTTCATATTTTTTCCCCATCATTGTTCAGCAGCA
GCAGCAGCAGCAGGTGTACAAGAACGGACCATGAGTGACGTACTGGTATC
TGTTTCGCAGCAGAGTCAGAAAAATTATGCGCACCCTTCTAGGGCACGTT
CCTCTTATGACAATCCATTGCATTATTCTCTGCCCACAAAACTCTGTCAT
TTCGAGACCCAAAAATGGCATGAAGAGGTGCCCTCAACTTATCTCATTGT
TGTGCCCTCGGCCTCAACACTGCAACTAGGGTAAGTAGGACCCCGAATGA
TCGGCAAGTCGGAAACTCACCCAAACTTGATTGAAGGAGCCAAACAAAAA
ATCAAATACCTGTAGCCTCCTTAACACGGTCGCTTTTTGTCCGATTCTTC
CCTTTTTCACGATTTCCGAATAATGGAAATCGCGATAGCGAGCTGAACAA
ATTGACTACATGGTGACCAAAGTACACCATGTATATATATATGTATATGT
ATATGGGCAATATCCTACACAGTACAGTTGGGGGTGCGCCTAACCCCGAA
TTGCAGCCAAATTCTGGCGAGAGCGACCACATCGATAAAGCGCCGAATAA
AGAAAAAATAAAAAAGAATGTGTTGATCGCCTGATAGCTAATGCCACCTT
CATCCCACAAAGTATTTGTATTCAATGTCGGGTTTCCATCCACTTGTTAG
CTGAAATACTCGATACAGGTTAGGAGTTGGCTCGTGAGACTCGACACACA
CTGGGGTATATGCCTAATGTAGAGCTTGATCTTATGGGACACTTAATCCA
CGTTATAAGAATTCCAAACGACCCAATAAATAGTTTTTTTTGCTACTTTC
TCTGTGAAGATGCTTTGTCGTCATGACTTGATGAATTCATAAAATAACCC
ATAGCTGTGGTATTCGCGCACACGACGCAAAAAACTGCATCCCAATCGAC
GACCTTCCTGAGAAGTGTATTTATTGACAACATAAACACAAACAAGTACC
CAAGCTACTCGAACTTAAAGTGGTCAATCAACACCAAAAACGCACCCAAA
ACTACTTGAATTTAGAGTGTGGGAGAGGGCATGCTTTTCGAACGTGAAGT
CGTTAGGGTTACGTTGGGTGGTCGTAGGGGCATATTCCGCATGGCATATT
GCAATGGATATAGCTCATTGTTGGAACCAGCATTCTCAGGGTCCCAAAGC
ACTCGAAACTTATCTTTGCTCGGCCTTTTTACCGTGTAGCTGTGAGCGGC
CCCAGTACATGATAAAAGGAGACAACGTGGTCAACACAACACCAGCAGCA
GTAGCGCTTCTTCGCGCATCCTACGCCAAACCACCCTTTGATATTATCAG
ATGACGTTGGATCTCTCCATGGTTATGCGTGTTTTTTTTTGGCGTGACGT
CACTTATATATTCTTTCTTATTTGGCCCAAACCTGTGATGATAACTGCTC
TTCGTATAGCGGAGTTTCTCACACGTAGGTTATTGTTTCCTTTTGCTGAC
TATGCTGTACAACACTCTCAGAGCGGTACGGCTGGGGTGGTAGAAGTAGT
CCTTTGCAATGTTCTGGTCTCTTGTATTAGCTGTATATTACTGTATGTCA
GAAAAGGCCCTGGGTCGATACAAGCCTGTCAGCTGGTGGGATGGTCACAC
GGTCCGTCCTTCCTGCTCTCAGCTCAAACTAAGACTACTTTACATAATCC
GGGGATTGGGGATGGAGCCGTCACATTAGACAATGACTATCACTTCCCGC
AATCAACATCGCATAACAAACCCTCTAAGAAGCCGGCAAAAATACGTGGC
CGATGCGAAATTTTAGGACACAAATACCGCCTTATTCAGGACAATTCAGG
ACTTGGGCGCACCCCTAATACTGCTTCTGCAACTTTCCCTCTAGTCTCAG
AAAAAATGAAATACGAGGAAAATGGGACACATGACCTCGGCGCTAAGGCT
ACCTTTTTTTTTTTTTTAATCCTCGGAAGGCTAAGGCGAAAACCTTTATC
CGATGCTTCCATACCGAAGTATTTCTACATTTCCTTTAACAGACCAGAAT
TATTTATTCCTCTGCGGGGTAAGGCTACCTCTTGTTCTGGCTGAGTCTTC
CGACGCACAACTCGCCGAATTTTGGTCTAGATTTTGTCAAGAGATGTAGC
AAGGTGTTCTCGGTGTGACAGAGATTCCCCTCTCCTGGGGTGGGCAGGAT
CGGTAACGGTTTTTGTTTGCGATACCAGGCCTGAAATGTACTTTCGTCCC
CTTTGCTGCGACACGGGAAAATTGGCCAGCGTATTTTTTTCTAATGCAGA
AAGCCCTACGGTTAATTTTGTGAACGTGGGACAGAGGGTGTGCCCATGTA
CGCTATGTCACGTTCCGCCCGTCACAACGAACGTGAGGCAGGTGTAAATC
TACTGCTGTGCTGGGTACTATCACGTACAACAACATGCCACTGTACAGTA
GCAACAGCAGCTACGGATGTTCTTGGGGTGATGCTGTTAACTGCCAAAGT
TCTCTCTCACTGCTATCGATATTTTGCAGCAACGGCGGTAATATGGCATG
TACACAGACGAAGCACATGGCGAAGGTCCTGCAGCAAACTAGCGTTTGTA
GTTCGACCCTCATCGCTGTGGACAATGATAACTGAGTGTAGTATTATGTC
GTTGATCCATGCCCCGCTGACGGTCACCGCTCGATCGACTTGATGTGTAT
ACTGTGTGCCTGCTGTACTACCTCCACATGAATAAGGCACACACAGCGCT
GCACCTCCAATCACCACCCTTCGATGAACTTGAACGTAGAGTTTATAAAG
TGGATAATGACCCTCTGATCTCAGGAGTCCATGTGTACCGTAGTATTTTT
TTCGTGTTTATGTCCCAATCGGAAGAAACTTTAATTGGTTTTACCGTAAC
ACCCTTTGATGTCACACTCAATTCCAATATCGGATTTTTTGGAGAAGCAA
GCAAGAGCCTGCGTTGCGGAAACAGAAGGTGTATCAGAAGATCTCAACGA
GATTTTTCCAACGATACCGTTGTCGATGCCATTATAAGCGAGCATCGTCG
CTGTCCGAGAAAATCGTACATTTGAAAAGTAGTGTTGCGGTACTTGAGCC
CCAACAAGGCCGTGCTGCTGTCCGTTGTGGTTGTCTTCTGTCGTCTATAC
AGTACCGTAGTTGTTCAATATCTCTATTACTGCTGCAGTTCTGTCAGACG
TAATGTACTACATTCAAATTAAAACCACGAGCAGCTCGTGCTGCTCGTGC
TGCTGCTCACAAAATCGGCCTCTGCTTCCTCCCTGTTCAACCAAGTTCCT
AGGTAATAACTAGGGCTATACCGGAATTGGCAGTAAATATTGATATCAGC
TCAAGAAATCTTCGGAAATTCGGCGAGCTACCAGTGTATATTCAGATGCC
ATCTTGATCATATCAAGAGTAAAAGCGCCTCGTTGCACAATAGAAACCCT
CAAGGAGAAAAATAAAGAAGTAATATGATCTGGGGGATATACCGAGAAGT
ACTGGTACTCCGCCAATATTTTACCTCGGGCGGCGCCTACACGGCGAGGG
CGCCTGTCTCCCCAGGCCACCAGAACAATATATACTGGCGGAGTGTGCCA
GTATCTAGCCCTGCTAGCCTTAGCCATAACCTTCACCCTCCCCCCGCCGC
CTCGTCTGTTTTCGGTTTTCTGGAGCAGCAAGACAACAAGACGTCGAGAT
GTTCCACGAAGCAGTCGCGCATCAGTAAATTTTACGATGCTTTTTACGAA
AAGCTATTTCAAGAGGCTCCAGACACTCGAGATCTGTTCGAGGGTAACAT
GGTGCGGCAAAGCCGGGCTCTCGTCAAGGTATGCATGTTCTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5699:7293..13485+

>mRNA_H-paniculata_contig5699.13242.1 ID=mRNA_H-paniculata_contig5699.13242.1|Name=mRNA_H-paniculata_contig5699.13242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig5699:7293..13485+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGAAGTTCCAGCACGCCGCTCTCGGTGACCTCGGGCGTGCGGGT
GACGGTGAAGGAGCGGTACCAACCGTACTTACCACCGGGGACCAACCTGA
ACGCGGTAATCAACCAAGAGAAGATCAAGCTTGTGCATGAGCACTGGAGC
TATATCGCAGACGAGATGGGAGGAAGTTCCAGCACGCCGCTCTCGGTGAC
CTCGGGCGTGCGGGTGACGGTGAAGGAGCGGTACCAACCGTACTTACCAC
CGGGGACCAACCTGAACGCGGTAATCAACCAAGAGAAGATCAAGCTTGTG
CATGAGCACTGGAGCTATATCGCAGACGAGCAAGACAACAAGACGTCGAG
ATGTTCCACGAAGCAGTCGCGCATCAGTAAATTTTACGATGCTTTTTACG
AAAAGCTATTTCAAGAGGCTCCAGACACTCGAGATCTGTTCGAGGGTAAC
ATGGTGCGGCAAAGCCGGGCTCTCGTCAAGGTATGCATGTTCTTACAAGA
CAACAAGACGTCGAGATGTTCCACGAAGCAGTCGCGCATCAGTAAATTTT
ACGATGCTTTTTACGAAAAGCTATTTCAAGAGGCTCCAGACACTCGAGAT
CTGTTCGAGGGTAACATGGTGCGGCAAAGCCGGGCTCTCGTCAAGGTATG
CATGTTCTTA
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