mRNA_H-paniculata_contig568.13220.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig568.13220.1
Unique NamemRNA_H-paniculata_contig568.13220.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig568.13220.1 vs. uniprot
Match: D8LIX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.840e-14
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  417 MPKPAGWQGQQVVEIRRDWIMFLATGLGIDTTLYSSPELENQLARKMLEQAERNFFESSSEEWDTDDDEDTGSDYWDENEGTDPRRGRSGGIQRGQSCRSRSRSR 731
            M KPAGWQ +Q VEIRRDWI FLA G+GIDT   +  +LE  + R MLEQAE + F+ S +EWDTD++E        E +   P+  R  G+ +G+  RS SR+R
Sbjct:    1 MQKPAGWQEEQAVEIRRDWIAFLADGMGIDTRGATGADLEALVVRTMLEQAEDDLFQDSFDEWDTDEEE--------EEDRLHPKGERRKGVAKGRKSRSHSRTR 97          
BLAST of mRNA_H-paniculata_contig568.13220.1 vs. uniprot
Match: A0A6H5L593_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L593_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-13
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  417 MPKPAGWQGQQVVEIRRDWIMFLATGLGIDTTLYSSPELENQLARKMLEQAERNFFESSSEEWDTDDDEDTGSDYWDENEGTDPRRGRSGGIQRGQSCRSRSRSRGRRAAVPVGSGNSSRDS------SGRPRRPRSAGVLG-RVLRRAQTTGDV 860
            M KPAGWQ +Q VEIRRDWI FLA G+GIDT   +  +LE  + R MLEQAE + F+ S +EWDTD++E+       + E  + R+G    + +G+  RS SR+R   +                     + R+PR  GVLG ++LRR+QTTGD+
Sbjct:    1 MQKPAGWQEEQAVEIRRDWIAFLADGMGIDTRGATGADLEALVVRTMLEQAEDDLFQDSFDEWDTDEEEEEDK-LHPKGERPEQRKG----VAKGRRSRSHSRTRYVSSCAEXXXXXXXXXXXXXXXXKAKRRQPRG-GVLGSKLLRRSQTTGDM 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig568.13220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIX3_ECTSI8.840e-1448.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L593_9PHAE1.310e-1341.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig568contigH-paniculata_contig568:9519..21885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D8LIX3
KEGG koko:K21437
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
EggNOG free text desc.protein retention in ER lumen
EggNOG OGsKOG0522@1,KOG0522@2759
Ec32 ortholog descriptionAnkyrin repeat domain-containing protein 13
Ec32 orthologEc-20_001920.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons7
Model size2687
Cds size1986
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.7702544-UTR-H-paniculata_contig568:9518..98031622930607.7702544-UTR-H-paniculata_contig568:9518..9803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 9519..9803 -
1691481370.0423355-UTR-H-paniculata_contig568:9518..98031691481370.0423355-UTR-H-paniculata_contig568:9518..9803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 9519..9803 -
1622930607.873444-UTR-H-paniculata_contig568:15296..153171622930607.873444-UTR-H-paniculata_contig568:15296..15317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 15297..15317 -
1691481370.0956447-UTR-H-paniculata_contig568:15296..153171691481370.0956447-UTR-H-paniculata_contig568:15296..15317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 15297..15317 -
1622930607.8880413-UTR-H-paniculata_contig568:16037..161461622930607.8880413-UTR-H-paniculata_contig568:16037..16146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 16038..16146 -
1691481370.1030664-UTR-H-paniculata_contig568:16037..161461691481370.1030664-UTR-H-paniculata_contig568:16037..16146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 16038..16146 -
1622930607.8991928-UTR-H-paniculata_contig568:21599..218851622930607.8991928-UTR-H-paniculata_contig568:21599..21885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 21600..21885 -
1691481370.1106517-UTR-H-paniculata_contig568:21599..218851691481370.1106517-UTR-H-paniculata_contig568:21599..21885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig568 21600..21885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.7841778-CDS-H-paniculata_contig568:9803..101731622930607.7841778-CDS-H-paniculata_contig568:9803..10173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 9804..10173 -
1691481370.0564706-CDS-H-paniculata_contig568:9803..101731691481370.0564706-CDS-H-paniculata_contig568:9803..10173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 9804..10173 -
1622930607.8031106-CDS-H-paniculata_contig568:10228..113411622930607.8031106-CDS-H-paniculata_contig568:10228..11341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 10229..11341 -
1691481370.0641239-CDS-H-paniculata_contig568:10228..113411691481370.0641239-CDS-H-paniculata_contig568:10228..11341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 10229..11341 -
1622930607.819278-CDS-H-paniculata_contig568:12790..130471622930607.819278-CDS-H-paniculata_contig568:12790..13047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 12791..13047 -
1691481370.071774-CDS-H-paniculata_contig568:12790..130471691481370.071774-CDS-H-paniculata_contig568:12790..13047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 12791..13047 -
1622930607.8383324-CDS-H-paniculata_contig568:14254..143471622930607.8383324-CDS-H-paniculata_contig568:14254..14347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 14255..14347 -
1691481370.080396-CDS-H-paniculata_contig568:14254..143471691481370.080396-CDS-H-paniculata_contig568:14254..14347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 14255..14347 -
1622930607.8563092-CDS-H-paniculata_contig568:15143..152961622930607.8563092-CDS-H-paniculata_contig568:15143..15296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 15144..15296 -
1691481370.0879834-CDS-H-paniculata_contig568:15143..152961691481370.0879834-CDS-H-paniculata_contig568:15143..15296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 15144..15296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig568.13220.1prot_H-paniculata_contig568.13220.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig568 9804..15296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig568.13220.1

>prot_H-paniculata_contig568.13220.1 ID=prot_H-paniculata_contig568.13220.1|Name=mRNA_H-paniculata_contig568.13220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=662bp
MPKPAGWQGQQVVEIRRDWIMFLATGLGIDTTLYSSPELENQLARKMLEQ
AERNFFESSSEEWDTDDDEDTGSDYWDENEGTDPRRGRSGGIQRGQSCRS
RSRSRGRRAAVPVGSGNSSRDSSGRPRRPRSAGVLGRVLRRAQTTGDVGR
RRSHNQDGKVRRDKGATRHGDGTMPKHGSALTSSASQDGDPADSRGTSSA
SVLKGGDAADSRDVSSAKGSGSDNGISRHRTSRSSNDSSLVGSALSSGSP
GRVNGGGGGGSSSISKSGVSSRSHLNAWRQKISSEGVARAGVKARDKHAG
NHQVAVISSRHAVADGEGEKGKSIGPVLDVVDDLAPGQDPGGPQEKYFAA
GHASPDKGNSLGATTRSGSHRKSSQGSRDSTASNDFRVKSRLDGSVAPTE
GRGVGGGRESSHSEPSASTGANAVYGGGSSRSSRSLIATRVSSRSSFGMD
DKSDRSRKRGTPRERGQRSQESSRTPSSRDGSRERHESSRSRRQVSSNDV
FVAERARDRSRERSSEDHSWERSSGDRSRERSSGDRSRDDRQETVLGSHL
QETVLGSDCQEIVLGSDRQGNVLWSGRQATALVTAWAGPEVTRAGVLRET
EYPGKPEINPGSDPQENALANAWTGLEVTGVAVLGATKRQNLDEIETVRG
SDRHGKGLVNA*
back to top

mRNA from alignment at H-paniculata_contig568:9519..21885-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig568.13220.1 ID=mRNA_H-paniculata_contig568.13220.1|Name=mRNA_H-paniculata_contig568.13220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12367bp|location=Sequence derived from alignment at H-paniculata_contig568:9519..21885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTGAAGACAGACGTGGGGAGAGTTCCACGACAATCCCGAGATAAGG ATTGGGAGAGGTGACCAGCTGTTCTAGCATAGCTTTCTTTTTCCCCTTCG TGTTCCAGTTGTTCAGTGTCTGCTCATCTCACATCATGTCCGTTCAGTTT GGCGGGCTGCGGCGGTCAATCTCTCTAGCGACTAGTACAACGACTACTGC AACACCATCAACGATATCGGCACCAGATTGCCAGCATCACTGCCACCATA GTATTCCAATTCCTAATGAAGCACCGGGTCAGAAGGGCTCAGGAGACTGG CTAAATCAGCCGGGGACCATCAGACGGGGGCTTGTCAAACCCGTCCACTT TGGAATTGACACCGGTGCACCCTCTCCAACCCGGTGAGCTGTCGCGGTCG TGGTGCTATCTGCAATATAACCTAAATACAGACCATGTTGTGCTTCGTCC GATATGATGGGTTTGCTAGCGTTCTTTTGTGTTCTCTCTTTATACTGGAC CTCCAGCACAGCAAGCAGAGAGAGAGACAGAGACAGACACAGGCCAGTTC AAACAAAGTCAACCTGATGTTGCAGACGTGGAACGTTTGGAGTCATACAG TTGCGTACTTGTGCATACAAATTTTACTAAAAGAAGGACATTACTTGACC GGACAAAGAACAGAGGTTGAGGGTCCCAAAGAAGCAAACTGAATCAATTA CGATAGGTCTGTGGTCTGCCTGCAGTCGACATTTTTGATTGGCACAGCAG TTGCCCCGCTATGTTGTCCTACGCTGTCTACTTGTTACAGCCTTGCTTTA TGACATGATTTGATACGTATTTGCACGATAAAATCTATCCAAGAAGGGCA AACGTTACCAGAGGCAGTCACGACGCGCCGATACCAAGCTGACTACAAAT AAAGTGTACCGCTGGAAATACATGGCTTTTTTCCAGGAGAGACGTTAGGG GTCTGCTGCAGTGAATTGCAGGATCGCGAAAGACACAGCAGTTAACTTAA CGACCGTACACATGTATTTATTTGCACATGAAAATATAGGTGAAAGGTTC GGGTTGTATATCTGTATTTGCATCATAGGTGAAAGATTTGGATTTCACAC AGGAGTTGCACCGCTATGTTTACTTTGTGTGGAAGGTGCACTTGGCAGGG ATGGGTGTCCACCAGACAAGAACAGTAGTATCTACTATGTATGTTGCACG CCACAAATCTTTCGATAAGGTGAACAGCACACCAGAAACGATAAATGCAC CAGAGTTGGATTCACACCTATGGCACCAGATTCCAATATACCAGTTCTTC ACGTTGCCCGCTAGTGGCACTATCTCCGGCCGAACGACTGTCTCTAGGTC AGATCCAACTCTGAGACAACGCACTCTTTATCCCTTCTGCTGGGGTCAGG GTGAGGGTTGGAGTTGGGTTGAGTTGGGTTGGTTTACGTTTAGACTTGGT AGCCAAAAGCATTGGTACACTGAGGCTTAGGCAAGGAAGTAAAGACAGGC CCGCGGCCGGGTTGTCTCGAGAGCAAAAAAAGAACACTCGCCAAATCGAT GACGACTAAGTTATCTATCTTGGGGCAAGAATTGATTTTGGTGTCTTGAC ATAGAAACCGAATTTGGTACCGGAGACCTCGAGGTTTGGAGTAACTGTTG TTGCAAATGGTTGAGGTCAGCAAACTTGAGAAATAATGGGAGAATGACAC ACGACACAATCATTGTCCTGCGCTCCTCTTATCACACCTTGCAATTCACC GCCTTTGGGCTGCCCTGCTTTTGGCCGCTTGGTCGATACGAAGGGGATTT GTCGTGCCTTGATCGCCGGGTCTTCCAATCACAGGCATGGTTGTTTTTCA CTTTCTGTGTCCAACGACCAAATCCCGTATCTGGATTGGAAGCTGTTGTC TATTTCTCTCGACAGATTTTTGTAGGATCGATTTTTTTGCCATCCTGAAA GTGTGACCAACTGCGACATACTACCACACCAGTTCTCCAACCAACAAGAG GCCCCCCATCCATTTTATTATTCTTCCTCTAGAAATTTGATGGCAATCGT TTTTTCTCTGCCAGATAAGACACGACCGGACAGAAGGTAAGAATTTTTTT TTGTCAGTGTGGGGGTAACGAAGGAGAGAACAAAACCTTTAAGAGATCCC CAAGGATATACGCTATTTACCTTGCTGCGGTACCAATTGCCCCCATCTGT TGCCCGATGTTCCTCCAGCTATGTATCCCTTTCGTTTTCCCTTGAGTTTC GTGTTCATCGGTTGGGTCTCGGCACTGTTTAATACAGAAAATTCTATCTA CAGGTGACTGCAGCACACCTCGAGGTGTATCTTAACCCAGGCTATTCTTT GTCTGCCTCGCTTGGTGGGCCTTTTGTTGTCGTTTATTCATTCTGAACAC TGTATCTGCAGCGTTCGTCGATGTGATCTAGCCCGATGGAAATCCGAGAA GGCACCCACGCTCGTGCGCAAATGCACGCATGTGTGTGATCAAGCCTCCA GCTAGTAGTGCTGTGTGCAGCACAGCTTGTTAACCTGTCGCTTTGCCGAG TACGCCTTGCATGCATTATGAAACGTTGATGACATCACGTGCTGGAAAGC CTTCTGCTACCGGGCAGACAGGTGTAACTATATAGAGTGATACTGCCTGT CCTGTTTGCTTTCTGTACTCGAGATATTTTGTTGAGATGATGATTCAACA GCTTCTACATGATCCATCAACTAAATAAAACATACCTGATGCGAAATGCG TGTGCAACAAGAGTTATGGTATTAGTCGCGCGCCCACGGACCTACGCCCG AACGGGTAGGGTAGCTCGTGAACTGAGCATGACTGGAAATCTAGTCAGAG GTCTTTTAGTGGGTACAACCTTCACACTGCCTACTTGGTTCGGCCAAACA GGGGTGAGGCCTACTCCGCAGAGGAATAAATAACTCTGTTCTGTTTAAGG AAAGGTAGAAGTACTTGGGTAGAAATACTTAAGTTTGGAAACATCGGATA AAGGCTTTTGCCTTAGCCTTCCGGGGGTTAAAAAAAGGAAAGAAATAGTC GTGCGCTGTATTGCAAGCTAGCTTCACAGGGTTGTGATCAGCCCATCAAT TAAATATGTTTTTACACGGGACATTGGTTGCATCTGTCCAGATGGCAAGC GTTGTGTTTCAGATAGAAGTTAGCATGCAGGTTGAAACCTTGCTGGATAC TCGTTCCATCCATATGTCAGAGTTTCCATCATGATTTCTGTATTTCGAAT ATTTTTTGTTTTTGTAAATCAGGACGTGACCATGTTGCGGGTTAACGGCC GTTCTAAAGGTTGGTATTCCCCTCTCCGTTTTTTCCTCTTTCCCCTTTAA TTAATTTTCTTCTCGTTTGTTTTTCCAAGTTTTCAAAATGACGAAGTGGC ATTTTCGCCTACAAATTTCCTTGAAGCTGTTTTTTTGCAAGTTTTCTTGA TTATTTCTCCAAAATCTCAGCTTTTTACCTGAAGAAAACGAAAGAAAGAA AAGAAAAACAGAGAACACAGGAAAAAGGAAGGGGGAAAATCCCCATCTTT AGCACGGCCCGAGGTGGTCTTACAAGTGACACCGGTCTCTCATCTACTCC CGACCTGGAGCCCCCACTTGAAAACTTGAAGAGAAACAAAGGACCCCTAG GGTATGACATGATAACAGAGAATTAGGAGCTGTGGTTGTTCAAATCGGCA GTGGTGTACAGACAGTGCATACAGCACGGACGGCGAGTTGTTGACCACGG TTTTGCGCACAATCTCTTCAGCGCTCCACTTTCGTCTTGTACTCTTTTTT TTATTCCAAAAAAAGCTCCGTTAGCTCCCGTAAGATTGAAATTCAGCTGC GGGTAGGTTTACGTTTTTCAAGCCGACAACTAAGCATAATTTCGTCGCCA TTTTTTTTATTTTTTTATTTAGTGTTGTGATGATTCGCTTACATACAACT TTGCATCATCCGCGACCTCGCTGCGTGGGTGTTTACTGTTGCTGTTGGCG TTATTGTTGTTGCTGCCGCCGCCGTCGGTGCTCTGCATGCTGGTTTGATC CACTTTCATGTTTTTTCGAAAAAACACAGAGTTGACGACGAGGACATGCC TCCGCATCCTACCAAGTTGGGGGAGAGGTTGCCCGGTATCAACCAACGAC CTTTGACAGCCGACAGGTGATCACGGTTTTTGTTTATTTCACGTGTACGG CACAAAATTTAGACGATTAAAAGCAATACTGAACACCTTTTGGTGCGCGT TCTTCTTTTGTAATATATATGTTATGCCGTAGAGTGCTCTGAGACCGCCC TCGAGGGAGCGGGGGGGAGGTTTCGAGTCCGTTTTTTTTATCGACGGCGA GATTCCCATGTACATTCATAAAAGCACGTCGATCAATCTTAAGGTGGTGT GTCAAAACACCGTTCGCGTCGTTTAGTTCTCAGAGTACTTACTCTACGGT ATATTACAAGTTGGCCTGGCAACTGTATTCAGCGTCTCCTGGAATTTTCG AGAGTACCACACTTATTCATGTAGTAAGTATGCCTATGGGAGGGATACAT ATTCGAAAGAATACCTGTGTTCCGCTGCCAAGTATTGCCCCATTGCACCC CTCGGACGAGTACAACGGTTCTTAGACCAAAGCTTGAAGAGTAGTGGTGT GGGTTTCAGGATAAGCGGGCACATGAAGGAAGTAACGTGTTATCACCCCC TATGTACTAGTTTTTAAAATATATCGCTGCAGTCGTAGATGGTCTAGGGC ACTGTAAAATAATACATGCTCTTGTGCTGAACCTTCAGTAAGTCCTTTTT AGTTTGCACCTGAATCAACCATCTGTGGTATTCGCAGTCGTCCGGGGGGG GGTAACGTTGGTGAACGGCTGGGACTACTCTCCCCCATTGCGTTATGATA TGCAGGGCAAGGACGGAGGCATGCATGAAAAAAAAATCCGCTCGTGTCTT TTATATCGCTTCCACGCTATCCGTCATTATTTAGCAGTTGGATTCGATTT GCTCTACGTGGGATGGGAAATTACGTTTATATGAATAAATGAAAACCCAC AAACGTTCCTTTTCCATACCACTCAAAATGTGGAGAAAAAATCCGGATTT TTGGACGGGCCTTTAAAGGCAGACTTGTTTTTGGGCGCAATGTTTTTTTT TTTCATGAGATATAATTGCCCAATTCCTTCTCTTTTGATCTAATCGTTGT GGCCGTGCTCAGTTTTCCAGCCTTGTGGAATACAAGCTCGATAAAGTCAG TAGAAGCATATGCATGGGAAGTCCAGGTGTATACAGCAGATGAACGCTGT CATATACAGCGTTGCTGTATCAATTTTTAGCAATAAGTGAGTGATGAAAT TATACGAATCGTGCCCCATGGGTAAATAAAAAAAAAACGAATGTATTATT CAACACAGATGACGGCTGTCTGCTACAGTGTTGCTGTGTCATGTTTTCAT CAATACGTGGGTAATGAGATGGTATGAGTCATACTCCATGCTTACTTTAG TCGTTTCGTGGAATATATCACTCGAGAGTAACACTTTGAGTCGGTTATTC CTCCAATTTTAAGTTCATTCCTATTGGTCTAACAGCTACGACACGCAAAA CTTGAGAACGTCTCCACCGACACCTCCCCCCCCTCTACACTCCCACGGGG CTTCCGCGCGACTCTCGGAAATTCCGGTCCATCGCCAACAGCCAACCAAG GCTGCGCGTCATCCCGGGCGAGAAGAGACGGTCAGCAAGTGCCCGATTGT CGACGAGAGAAGGACATGCGTTCGGGGAGACGACAAGAGGAAGCAGGGTG AACCCCGTGGCACTTGAGATTCGTTCTCCCGGATCAGGGGTTGGCGAGGT AAGCATATATCTATCTATCTATCTATCTATCTCTCTATATATATATACCC TCGGAGAGAGTGGGATGAGTCGTAGCAGGCAGCGCTTTTGATTACGTTTC GTCAGGGCTTTTCTTTTGAACCGCTTCATCTCTATCAGTAGCGGTTTGTA GGTTAGGGGTGGCACACTGCGGGTAATGAAAGTTATACATGCCAAACCAA AACTGTACACGTTTTTTTCGTTCAACAAAGAGATGGAATTCGTGGGGAAT GAATGAAATTCTCCTGTATGATGGTATATCCAGGTGCTGTCACGAAATTC CGCAGATCGTCACTGGACGGGATCGTCGTTCCGTTGCATTTCGTCTCATT TTGTCTCTTCCCGTGAGGTCGTGGTGTGTCTGCGTGAGAATTCATGATAT CCATAGATTCACCACGTATGGATCTCACGGGACAGCCCCTCCCTAACCCG TCAACATCCAAACCTACCTTGTTCCGGCCTTTCCCGTAGTCCCGTGGTTA CCCCCCCTCGAGTATCGTGTGAAGTACGATGTACTTGCAGGTGTGTTTAC TTGCGTCTCTTTCTCCGTGTCTATTTTGTCCCTTTTCCTCTGTGTCTGTG TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATTTGCATCTTTTTCTATC TCTTTCCCTCCCTCTCCCTCCCTCCTCCTTTGGGTCTTTCTGCCTGCTTC CCTCCTTCCCTCTTGCAGGGACCCATAGAGTTCAACAAGATGCCGAAGCC GGCCGGGTGGCAGGGCCAGCAAGTAGTCGAGATACGGCGAGACTGGATCA TGTTCCTCGCGACGGGTCTTGGGATCGATACCACGCTCTACAGCAGCCCT GAACTGGAAAACCAACTAGCACGAAAGATGCTAGAGCAGGCGGTGAGTTG CCAAGCGACAGGGGATGGATAGGAGGGCGGGTCGAGCGGGAGGGGAAAAT CTACTGTATTCGTTAAAAGGAAGTGGGATCGGATTCCCGAAAGTAGATAT CAAAATCTGGCAGGATGGAGTAATCGTTCCAAAACGGTGATCATCATTGT CACCATCATCATATGCACGTATTGTATTTATAGGAATACCCTGGGACGTA GTTGAGCGTTGGACTCTTGCGGAGTTGCCGCAGGTCACCTTAGCTCTGAC TTTGTAGAAATTACGTAACGGGAATCGTTGGTGTCTGTTTTCATCCGTTT TTTGCGTGAGTCGTTCTACGATATGGGTAATTAGATACGGGGGGCCACTT TTGGAGCATGACCACTCCGCTGAGTGAGATGGAACAATCTACTTGAATAT CTTGGGCCGTGCCCATCCCATTTTTGTCTTCCGTTGTTCTATAGGCGGGT GGAGCCCTTTACTTCCTTTCAAAAGTCTTCAGCCCCCCCCCCCAAAAGAG GGTAGGTAGGTACCCACCCTGCACAAAAAGGATGGCACCCCTCCCCGTGT ACCGACACGTGTGTGTGTGTGTGTGTGTGTGTCTGCGTGTGTGTCGATCA TCCCTCAACTTTTATCTACTATCTCACATGCTGCGGGATGTATCTCCATC CTACTATTAGCACATATCATCCAACAAGATGGCTGGCTTCGACAAGAAAC ACAAGGTGCCATTGAGATGAGAGCGCGACTAGCCAGCATGCGGCAATCCC CCCGCCTCCCCTCCCCTTTACACTACTGAACACCCCAGGAGAGAAATTTC TTCGAAAGCTCTTCTGAAGAGTGGGACACTGACGACGATGAAGATACGGG CAGTGACTACTGGGACGAGAATGAGGGGACGGTAAGTAGTAGAGAAAATT TGGGGCTCGGCACGGGGACGTGCTCCATCTCTGTAGTAAGTGTAGTGCTT GAGGGAATCTCGCAGATTCCAGTATACTGAGATTCGCTAACGTCTAGCAA AAACGCCTTATTTTATAACAGAAAACCTTAATTATCGACTTTCTGCGTTG ATCCTGCTCCGGAGCGGACAAAGTAGCGAATGTCGATATACTCGATGCTG ACGTATCAGGTGGCATCTAGCCTACGAATTACATGTATCGATGAACGCAT GGACCAGAAAATTCTCCTGGTTATGTATTGAGATACCCAGGCACTTTGTT GTGCATCTTTGGCTGCTGCTGGTTTTTTGGTGTCTAAGGCTTCCGTTGGT GAAGGTGGTGGTGGTGGTGTTTTGTTCGAGCTTGGCTGTTGCTCTGTTGG TATTTTTCTGCCTGTTATTCTCGTCTATGCAAAACAACATACGCCTGGAA ACAGTATGGGAACTATTCCGAGATAACCGTCAGTTATCACTTCAACCGTT GAAGTCATATGGTTTGAGTGAGGATTTACAGCTTAGGCAGAAGCTGTACG AAGCCTCGATATGAGAACGCGCTACGTACATGTATGGGTTTTGTCCAGTA CCCCCTCCGCTATTGTTCATTATCTAATTTTGTTGATGAGTGCATATAAT TTCAGATCGACGTCAGCTGCGTATTATCAACATGGGTACAATGAAGTAAT TATGTGGAGGTACTATCCCCTCCCCCCCCCCGTTTTGTTGTTTACTAGTC CTAATGACGAAATGCAATATATGCGAAAACCTACACGGAATTTGTTTAGT ACCAGGTTCAAATGAATAGACGTCAGAACCCTGATTAGCATTGCAGAACC TAGTTGGTGTAGTAACGCAAGGATGACGATAAGTGATCCAGTATCACCCT TCGAAAACGCAGTCTGGCCGGCGAAAACTTGAGATGCTCCGACCCGACAC AGTAGGAAGCGAGTTCAATGGTCGAAACACTGCGGCACGCATTTTCATGG GTACACTCCCCTCCCCCCTTCCTCTCCCGATCCACTTTGTTTTATATCAA TATAATTCCGCCGATGATTGGGTGTACACAAGCTGAGAGTTGAGGTCAGC GTATAACCCTAACATGGGCACGTTCTTAGTGTTCCCCCCCCCCACACTTT TGCCCAATGTGTTTCGCCGCCTGCCCGGGTCCCACCAGGATCCAAGGCGC GGCAGGTCGGGGGGCATCCAGCGCGGCCAATCTTGCCGGAGCCGAAGTCG CAGTCGTGGGCGGCGGGCGGCGGTGCCTGTTGGATCGGGCAATAGTAGTC GGGACTCGAGTGGACGTCCTCGGCGACCTCGTTCGGCTGGTGTGTTGGGG CGTGTTCTTCGACGCGCTCAGACGACGGGGGATGTCGGGAGGAGGCGATC GCATAACCAAGATGGGAAAGTGAGGCGTGATAAAGGCGCCACCAGGTACA GTAACGACCCGCTCTCAAGAAGCGCAATCGCAAGAACATCAGGCCGAGGT TTTGCTAACCCATAAGAATCCCGGGCGATTATTTTAAGTAAAATTTAACC CTGAGCTAAAACTCTGAACCTCGTATCATAACTCCATTTCATCCATCTTG AGGTCAAGCAGCTGACTTTCATCTGCTGTTGTACACATCTATTAGCAACA TCAAATGAACGAGGCGGGATGGGCATGGCTCTCAAATAAAAGAGCCTGGC CTTTTTTCTTTTTTTTTTAACCCCCGGAAGGCTGAGGTAAAAACCTTTTC CGCTGCTTAGAGCCTGGCCCTTTTGCTACTGTTCGTTGATTCTCGCCAAA ATATGGTTTTGAGTCTTAGCGGGTCATCAGTACAGGATACATGTATATAT GTAGTATGTGCATGCATATATTGATGTATTGGAACGCAGCAAGCCATGTT GCGCTGTTAAAGGAGAAGCAAAAACGCGGACTGCACGGGCGCAGCCGTGG CTATATTGCTTGTGCTAAGACATTATAGTGGTTGGTGAATTAGGTTGTGT ACTGGGTTCAGTGAGCTGGTGTTGCGTTGCATTTGCTCGCTTTGGGCACG TTGCATTCCCCGTGGTGTGTCGCGTTCACGGAAAGTTTATTTCCCCAGGG GAGCTAAAGACCGTTTTGACAGGTGTCTTGCAGATTCCGTCACACCGCTG CGACGTGGGTTTGCGCCGCTATCGCTTCGTGAGGATGCGCGAGACCTCTC GACCGCTTGCGCCGTACGAGCTGTTGGCAGTAGAGAGAAAACACGTTGAT GGATCATGACACGTTTACGTCGGGCTGCGCCTTAGCATGAATGGTTTATT GGACAGGGTGAGTATTCTGAACTTGGATTAACTTCGTGATAAGTTTCGTG AGCTGTGTCCCGCCCCGCGAACATGTCGCTAATCTTGAATCTCGCAAAGG ATGTTTTTCGACAGCTATAATTATATTTTCGTTCGTAATGTCACAATCAA TCCCGATAAACCATCTCAACGAACACCTCTGGATAAGCGGTGGAAGCTGT TCACGCACAATCAATTGGTGCACTCAGAGCTTTTACATTGCCTTCCGCGC ATATTCCTCGTATTCACTTCATATTCACGAAACAATCTTGCTGTAGGGTT TGGTTGATACTGCTAGCTCTGGTATTTAGTAGAGTATGACGACAACTATT GCATACCAGTACAGGCTACTCCAGTGTTTCGTCCTCCACGAGTACGTCGA CCCGCGGCGTTTGCAGTGGCTGGCTATGCTCTCGAGAAATGCCGGCACAA ATGTCCGTGAAAGTTGGCTTTTTGAAGTTACTCTGCGAAACGACCAGCAT CACGACCTTACCGTATCAAATGTATAACAATGCTTTCCCCCACCCCTACC CCCGCCTCGACTGCCATTTTTTTCTCGTTTGGTGTCATTTTCAGGCACGG AGATGGGACAATGCCGAAACATGGCAGTGCTCTCACCAGTAGCGCGTCGC AGGATGGAGACCCCGCTGATAGCCGTGGGACCTCCTCGGCTAGCGTGTTG AAAGGAGGAGACGCCGCCGATAGCCGGGACGTCTCCTCGGCAAAAGGCAG TGGCAGCGATAATGGTATAAGCCGACACAGGACGAGCCGCAGCAGTAATG ACAGTAGCCTCGTAGGCAGCGCACTAAGCTCAGGCAGCCCGGGCAGAGTC AACGGCGGCGGCGGCGGCGGCAGCAGCAGCATCAGCAAAAGTGGAGTTTC TTCACGTTCGCACCTAAATGCGTGGCGACAGAAGATCTCTTCGGAGGGGG TTGCACGCGCTGGCGTGAAGGCGCGAGATAAGCATGCGGGTAACCACCAG GTCGCCGTCATTTCGTCACGGCATGCTGTAGCTGACGGAGAAGGCGAAAA AGGAAAGTCGATTGGCCCCGTGCTGGACGTGGTCGATGACCTTGCGCCCG GCCAAGATCCCGGTGGTCCTCAAGAAAAATACTTTGCTGCTGGACACGCT AGCCCCGACAAAGGTAACTCTCTCGGCGCGACTACCCGTAGTGGTAGTCA CAGGAAGTCCTCTCAGGGTTCTCGCGACAGCACCGCCAGCAATGATTTCC GAGTAAAATCCCGGCTGGATGGCAGTGTTGCACCCACGGAAGGAAGAGGT GTCGGAGGCGGACGGGAAAGTAGTCACAGCGAACCAAGCGCGAGCACAGG CGCGAATGCGGTTTACGGCGGCGGTAGTAGTAGGAGTAGCAGGAGCCTTA TTGCTACTAGGGTCAGTAGCCGCAGTAGCTTCGGTATGGACGACAAATCC GATCGCAGCAGAAAGCGTGGGACACCTCGGGAGCGTGGTCAACGTTCCCA GGAGAGTTCGCGGACCCCATCGTCGCGTGACGGGTCTCGTGAGCGTCACG AAAGCAGCAGATCTCGGCGGCAGGTATCTTCAAACGATGTTTTCGTAGCG GAGAGAGCCCGGGACCGTTCTCGGGAGCGATCGTCGGAAGACCATTCTTG GGAGCGATCGTCAGGAGACCGTTCTCGGGAGCGATCGTCAGGAGACCGTT CTCGGGAGCGATCGTCGGAAGACTGTTCTCGGGAGCGATCGTCAGGAGAC CGTTCTCGGGAGCGATCGTCAGGAGACCGTTCTCGGGAGCCATCTTCAGG AGACCGTTCTCGGGAGCGATTGTCAAGAGATTGTTCTCGGGAGCGATCGT CAGGGGAATGTTCTCTGGAGCGGTCGTCAGGCAACCGCTCTCGTAACCGC TTGGGCAGGACCGGAAGTCACTCGCGCCGGGGTCTTGAGAGAGACGGAAT ATCCAGGAAAGCCCGAGATCAATCCCGGGAGCGATCCCCAGGAGAACGCT CTCGCGAACGCTTGGACAGGACTGGAAGTCACCGGCGTCGCGGTTCTAGG CGCAACGAAGCGTCAAAATCTGGACGAAATCGAGACCGTTCGCGGGAGCG ATCGTCACGGGAAGGGTCTCGTGAACGCTTAGATAGCACCGGAAGCCATC GGCGGCGGGGCTCTGATTCATTGTCCCGCGAGGAATCTGGTGAGTGTTGG GAAAGCGCTCGAGATCGCCGGCGGGACTCTGATCTGTCTAATGATGGGTC TCGTAAGCGGCTGGAAAACACTGGGAGTCGTCTGCGCGGTTCCGCCAGCA GGTCGTCCGCAGCCGAAAATGCTCGTTTGGCGCGAGTTCATGGTCGCGAT AGCACTGGCAACACGAGCATGTTAGGGGAGCCGTCCTTGGAGCGCAAAAA CCCCAACGAGACGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig568:9519..21885-

>mRNA_H-paniculata_contig568.13220.1 ID=mRNA_H-paniculata_contig568.13220.1|Name=mRNA_H-paniculata_contig568.13220.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3972bp|location=Sequence derived from alignment at H-paniculata_contig568:9519..21885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAAGCCGGCCGGGTGGCAGGGCCAGCAAGTAGTCGAGATACGGCG
AGACTGGATCATGTTCCTCGCGACGGGTCTTGGGATCGATACCACGCTCT
ACAGCAGCCCTGAACTGGAAAACCAACTAGCACGAAAGATGCTAGAGCAG
GCGATGCCGAAGCCGGCCGGGTGGCAGGGCCAGCAAGTAGTCGAGATACG
GCGAGACTGGATCATGTTCCTCGCGACGGGTCTTGGGATCGATACCACGC
TCTACAGCAGCCCTGAACTGGAAAACCAACTAGCACGAAAGATGCTAGAG
CAGGCGGAGAGAAATTTCTTCGAAAGCTCTTCTGAAGAGTGGGACACTGA
CGACGATGAAGATACGGGCAGTGACTACTGGGACGAGAATGAGGGGACGG
AGAGAAATTTCTTCGAAAGCTCTTCTGAAGAGTGGGACACTGACGACGAT
GAAGATACGGGCAGTGACTACTGGGACGAGAATGAGGGGACGGATCCAAG
GCGCGGCAGGTCGGGGGGCATCCAGCGCGGCCAATCTTGCCGGAGCCGAA
GTCGCAGTCGTGGGCGGCGGGCGGCGGTGCCTGTTGGATCGGGCAATAGT
AGTCGGGACTCGAGTGGACGTCCTCGGCGACCTCGTTCGGCTGGTGTGTT
GGGGCGTGTTCTTCGACGCGCTCAGACGACGGGGGATGTCGGGAGGAGGC
GATCGCATAACCAAGATGGGAAAGTGAGGCGTGATAAAGGCGCCACCAGG
ATCCAAGGCGCGGCAGGTCGGGGGGCATCCAGCGCGGCCAATCTTGCCGG
AGCCGAAGTCGCAGTCGTGGGCGGCGGGCGGCGGTGCCTGTTGGATCGGG
CAATAGTAGTCGGGACTCGAGTGGACGTCCTCGGCGACCTCGTTCGGCTG
GTGTGTTGGGGCGTGTTCTTCGACGCGCTCAGACGACGGGGGATGTCGGG
AGGAGGCGATCGCATAACCAAGATGGGAAAGTGAGGCGTGATAAAGGCGC
CACCAGGCACGGAGATGGGACAATGCCGAAACATGGCAGTGCTCTCACCA
GTAGCGCGTCGCAGGATGGAGACCCCGCTGATAGCCGTGGGACCTCCTCG
GCTAGCGTGTTGAAAGGAGGAGACGCCGCCGATAGCCGGGACGTCTCCTC
GGCAAAAGGCAGTGGCAGCGATAATGGTATAAGCCGACACAGGACGAGCC
GCAGCAGTAATGACAGTAGCCTCGTAGGCAGCGCACTAAGCTCAGGCAGC
CCGGGCAGAGTCAACGGCGGCGGCGGCGGCGGCAGCAGCAGCATCAGCAA
AAGTGGAGTTTCTTCACGTTCGCACCTAAATGCGTGGCGACAGAAGATCT
CTTCGGAGGGGGTTGCACGCGCTGGCGTGAAGGCGCGAGATAAGCATGCG
GGTAACCACCAGGTCGCCGTCATTTCGTCACGGCATGCTGTAGCTGACGG
AGAAGGCGAAAAAGGAAAGTCGATTGGCCCCGTGCTGGACGTGGTCGATG
ACCTTGCGCCCGGCCAAGATCCCGGTGGTCCTCAAGAAAAATACTTTGCT
GCTGGACACGCTAGCCCCGACAAAGGTAACTCTCTCGGCGCGACTACCCG
TAGTGGTAGTCACAGGAAGTCCTCTCAGGGTTCTCGCGACAGCACCGCCA
GCAATGATTTCCGAGTAAAATCCCGGCTGGATGGCAGTGTTGCACCCACG
GAAGGAAGAGGTGTCGGAGGCGGACGGGAAAGTAGTCACAGCGAACCAAG
CGCGAGCACAGGCGCGAATGCGGTTTACGGCGGCGGTAGTAGTAGGAGTA
GCAGGAGCCTTATTGCTACTAGGGTCAGTAGCCGCAGTAGCTTCGGTATG
GACGACAAATCCGATCGCAGCAGAAAGCGTGGGACACCTCGGGAGCGTGG
TCAACGTTCCCAGGAGAGTTCGCGGACCCCATCGTCGCGTGACGGGTCTC
GTGAGCGTCACGAAAGCAGCAGATCTCGGCGGCAGGTATCTTCAAACGAT
GTTTTCGTAGCGGAGAGAGCCCGGGACCGTTCTCGGGAGCGATCGTCGGA
AGACCATTCTTGGGAGCGATCGTCAGGAGACCGTTCTCGGGAGCGATCGT
CAGGAGACCGTTCTCGGGAGCACGGAGATGGGACAATGCCGAAACATGGC
AGTGCTCTCACCAGTAGCGCGTCGCAGGATGGAGACCCCGCTGATAGCCG
TGGGACCTCCTCGGCTAGCGTGTTGAAAGGAGGAGACGCCGCCGATAGCC
GGGACGTCTCCTCGGCAAAAGGCAGTGGCAGCGATAATGGTATAAGCCGA
CACAGGACGAGCCGCAGCAGTAATGACAGTAGCCTCGTAGGCAGCGCACT
AAGCTCAGGCAGCCCGGGCAGAGTCAACGGCGGCGGCGGCGGCGGCAGCA
GCAGCATCAGCAAAAGTGGAGTTTCTTCACGTTCGCACCTAAATGCGTGG
CGACAGAAGATCTCTTCGGAGGGGGTTGCACGCGCTGGCGTGAAGGCGCG
AGATAAGCATGCGGGTAACCACCAGGTCGCCGTCATTTCGTCACGGCATG
CTGTAGCTGACGGAGAAGGCGAAAAAGGAAAGTCGATTGGCCCCGTGCTG
GACGTGGTCGATGACCTTGCGCCCGGCCAAGATCCCGGTGGTCCTCAAGA
AAAATACTTTGCTGCTGGACACGCTAGCCCCGACAAAGGTAACTCTCTCG
GCGCGACTACCCGTAGTGGTAGTCACAGGAAGTCCTCTCAGGGTTCTCGC
GACAGCACCGCCAGCAATGATTTCCGAGTAAAATCCCGGCTGGATGGCAG
TGTTGCACCCACGGAAGGAAGAGGTGTCGGAGGCGGACGGGAAAGTAGTC
ACAGCGAACCAAGCGCGAGCACAGGCGCGAATGCGGTTTACGGCGGCGGT
AGTAGTAGGAGTAGCAGGAGCCTTATTGCTACTAGGGTCAGTAGCCGCAG
TAGCTTCGGTATGGACGACAAATCCGATCGCAGCAGAAAGCGTGGGACAC
CTCGGGAGCGTGGTCAACGTTCCCAGGAGAGTTCGCGGACCCCATCGTCG
CGTGACGGGTCTCGTGAGCGTCACGAAAGCAGCAGATCTCGGCGGCAGGT
ATCTTCAAACGATGTTTTCGTAGCGGAGAGAGCCCGGGACCGTTCTCGGG
AGCGATCGTCGGAAGACCATTCTTGGGAGCGATCGTCAGGAGACCGTTCT
CGGGAGCGATCGTCAGGAGACCGTTCTCGGGACGATCGTCAGGAGACCGT
TCTCGGGAGCCATCTTCAGGAGACCGTTCTCGGGAGCGATTGTCAAGAGA
TTGTTCTCGGGAGCGATCGTCAGGGGAATGTTCTCTGGAGCGGTCGTCAG
GCAACCGCTCTCGTAACCGCTTGGGCAGGACCGGAAGTCACTCGCGCCGG
GGTCTTGAGAGAGACGGAATATCCAGGAAAGCCCGAGATCAATCCCGGGA
GCGATCCCCAGGAGAACGCTCTCGCGAACGCTTGGACAGGACTGGAAGTC
ACCGGCGTCGCGGTTCTAGGCGCAACGAAGCGTCAAAATCTGGACGAAAT
CGAGACCGTTCGCGGGAGCGATCGTCACGGGAAGGGTCTCGTGAACGCTT
AGCGATCGTCAGGAGACCGTTCTCGGGAGCCATCTTCAGGAGACCGTTCT
CGGGAGCGATTGTCAAGAGATTGTTCTCGGGAGCGATCGTCAGGGGAATG
TTCTCTGGAGCGGTCGTCAGGCAACCGCTCTCGTAACCGCTTGGGCAGGA
CCGGAAGTCACTCGCGCCGGGGTCTTGAGAGAGACGGAATATCCAGGAAA
GCCCGAGATCAATCCCGGGAGCGATCCCCAGGAGAACGCTCTCGCGAACG
CTTGGACAGGACTGGAAGTCACCGGCGTCGCGGTTCTAGGCGCAACGAAG
CGTCAAAATCTGGACGAAATCGAGACCGTTCGCGGGAGCGATCGTCACGG
GAAGGGTCTCGTGAACGCTTAG
back to top