mRNA_H-paniculata_contig5662.13197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5662.13197.1
Unique NamemRNA_H-paniculata_contig5662.13197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.770e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDMATIFV 174
            ++GK+V L + LYGLKQAS+ WHK LV  MK LGFEQC  D CV+RL  +G +A + V
Sbjct:  740 LSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVV 797
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BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5KG18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG18_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.150e-12
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDMATIFV 174
            ++G +V L + LYGLKQAS+ WHK LV  MK LGFEQC  D CV+RL  +G MA + V
Sbjct:  109 LSGNIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGIMAMVVV 166
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5K3C4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.420e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDMATIFV 174
            ++G VV L + LYGLKQAS+ W   L+  MK+LGFEQC  DPCV+RL  DGD+ T+ V
Sbjct:  473 LSGTVVKLARNLYGLKQASRMWPYHLLRAMKRLGFEQCAADPCVMRLMEDGDVVTMVV 530
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.250e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            M+GKVV LNK LYGLKQAS+ ++KRLVS++K++GFEQ L DPCVLR  +  ++
Sbjct:  917 MSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEV 969
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.040e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            MTGKVV L K LYGL+QAS+ +HKRLVS++K++GFEQ L DPCVLR  +  ++
Sbjct:    1 MTGKVVRLGKSLYGLRQASRIFHKRLVSDLKRIGFEQSLSDPCVLRFMMGDEV 53
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            M+GKVV LNK LYGLKQAS+ ++KRLVS +K++GFEQ + DPCVLR  +  ++
Sbjct:  119 MSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 171
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.530e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            MTGKVV L+K LYGL+QAS+ +HKRLVS++K++GFEQ L DPCVL   +  ++
Sbjct:  286 MTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEV 338
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.550e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDMATI 168
            M+GK+V LNK LYGLKQAS+ ++KRLVS++ ++GFEQ L DPCVLR  +  ++  I
Sbjct:    1 MSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGI 56
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.550e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            M+GKVV LNK LYGLKQAS+ ++KRLVS +K++GFEQ + DPCVLR  +  ++
Sbjct:  684 MSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 736
[Close]
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVDGDM 159
            M+GKVV LNK LYGLKQAS+ ++KRLVS +K++GFEQ + DPCVLR  +  ++
Sbjct:  585 MSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEV 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5662.13197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.770e-1256.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KG18_9PHAE2.150e-1256.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C4_9PHAE4.420e-1256.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE6.250e-1262.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGA6_9PHAE7.040e-1262.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE1.380e-1160.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE1.530e-1160.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KS88_9PHAE1.550e-1157.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3Y0_9PHAE1.550e-1160.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.560e-1160.38Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5662contigH-paniculata_contig5662:3822..4114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size293
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.344143-CDS-H-paniculata_contig5662:3821..40131622930605.344143-CDS-H-paniculata_contig5662:3821..4013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5662 3822..4013 +
1691481368.9423904-CDS-H-paniculata_contig5662:3821..40131691481368.9423904-CDS-H-paniculata_contig5662:3821..4013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5662 3822..4013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.356264-UTR-H-paniculata_contig5662:4013..41141622930605.356264-UTR-H-paniculata_contig5662:4013..4114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5662 4014..4114 +
1691481368.9511552-UTR-H-paniculata_contig5662:4013..41141691481368.9511552-UTR-H-paniculata_contig5662:4013..4114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5662 4014..4114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5662.13197.1prot_H-paniculata_contig5662.13197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5662 3822..4013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5662.13197.1

>prot_H-paniculata_contig5662.13197.1 ID=prot_H-paniculata_contig5662.13197.1|Name=mRNA_H-paniculata_contig5662.13197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MTGKVVLLNKPLYGLKQASKQWHKRLVSNMKKLGFEQCLVDPCVLRLTVD
GDMATIFVFKLSI*
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mRNA from alignment at H-paniculata_contig5662:3822..4114+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5662.13197.1 ID=mRNA_H-paniculata_contig5662.13197.1|Name=mRNA_H-paniculata_contig5662.13197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=293bp|location=Sequence derived from alignment at H-paniculata_contig5662:3822..4114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGAAAAGTGGTACTCTTGAACAAACCTCTGTATGGCTTGAAGCA
AGCATCCAAACAGTGGCACAAACGTTTAGTGTCAAACATGAAGAAACTCG
GGTTTGAGCAGTGTTTAGTTGACCCGTGTGTGTTACGACTTACGGTGGAC
GGCGATATGGCCACAATCTTCGTATTCAAGCTAAGCATCTAGGAGAACTC
GCTTGGTACATGAGCAGCGAGTACAAGAGGGATAGAGAGATGGAAACACT
TGAGATTTCCCAAACTCAGTTCAGTCGCAGTGTTATCTGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5662:3822..4114+

>mRNA_H-paniculata_contig5662.13197.1 ID=mRNA_H-paniculata_contig5662.13197.1|Name=mRNA_H-paniculata_contig5662.13197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig5662:3822..4114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGAAAAGTGGTACTCTTGAACAAACCTCTGTATGGCTTGAAGCA
AGCATCCAAACAGTGGCACAAACGTTTAGTGTCAAACATGAAGAAACTCG
GGTTTGAGCAGTGTTTAGTTGACCCGTGTGTGTTACGACTTACGGTGGAC
GGCGATATGGCCACAATCTTCGTATTCAAGCTAAGCATCTAGATGACGGG
AAAAGTGGTACTCTTGAACAAACCTCTGTATGGCTTGAAGCAAGCATCCA
AACAGTGGCACAAACGTTTAGTGTCAAACATGAAGAAACTCGGGTTTGAG
CAGTGTTTAGTTGACCCGTGTGTGTTACGACTTACGGTGGACGGCGATAT
GGCCACAATCTTCGTATTCAAGCTAAGCATCTAG
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