mRNA_H-paniculata_contig5513.12990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5513.12990.1
Unique NamemRNA_H-paniculata_contig5513.12990.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5513.12990.1 vs. uniprot
Match: D8LG73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG73_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 6.910e-49
Identity = 77/97 (79.38%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   19 KLIGEARRQLDPVDKLITEAKWDAIRNIIKTYPLADMKNVISELSRQCDEQDSGALLGMRQDVLDHIQFLDSFSYNNVFVGEERQILGTKIDYDTPR 309
            +L+ EAR QLDPVD++I +AKWDAIRNIIKT PLAD+KNVI+EL+RQ DE DS  LLG+RQDVLDH+Q+LDSFSYNNVFVGEERQILGTKID+DTPR
Sbjct:   70 RLLREARTQLDPVDQMIEDAKWDAIRNIIKTSPLADVKNVIAELARQSDEDDSALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPR 166
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BLAST of mRNA_H-paniculata_contig5513.12990.1 vs. uniprot
Match: R7QPP4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP4_CHOCR)

HSP 1 Score: 96.3 bits (238), Expect = 1.660e-22
Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 GIGLQAKLIGEARRQLDPVDKLITEAKWDAIRNIIKTYPLADMKNVISELSRQCDEQDSGALLGMRQDVLDHIQFLDSFSYNNVFVGEERQILGTKIDYDTPRFGEISVND 333
            G+ L    +   R ++D +D LI  AKWD++R ++ + P+  +K+V ++L     +   GA++G+R+D+   I+ LD+  Y NVF+GE+RQILGTK+DYD P+     V D
Sbjct:   84 GLTLSRTSLQSIRARVDDIDPLIAAAKWDSVRTVLASRPVVGVKDVCNQLLNASSQDAGGAIVGLREDLQSAIRLLDTSVYANVFIGEDRQILGTKVDYDVPKIYLGDVKD 194
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BLAST of mRNA_H-paniculata_contig5513.12990.1 vs. uniprot
Match: A0A1Z5KBF4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBF4_FISSO)

HSP 1 Score: 57.8 bits (138), Expect = 8.960e-8
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   25 IGEARRQLDPVDKLITEAKWDAIRNIIKTYPLADM-----KNVISELSRQCDEQ--DSGALLGMRQDVLDHIQFLDSFSYNNVF 255
            I +AR+Q++ V  LI E KWD++R I+ T PLAD      + ++   + Q  +   D  A + +R+D++ H+++LD   YNNVF
Sbjct:   78 IQQARKQMENVPNLIQEEKWDSVRAILITPPLADCWAKTSRPLLKNYADQVGDNGGDELAAIELREDLISHLRYLDMAVYNNVF 161
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BLAST of mRNA_H-paniculata_contig5513.12990.1 vs. uniprot
Match: A0A448YYW4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYW4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.980e-5
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   10 LQAKLIGEARRQLDPVDKLITEAKWDAIRNIIKTYPLADMKNVISELSRQCDEQ------DSGALLGMRQDVLDHIQFLDSFSYNNVF 255
            ++A LI EAR+QL+ V  L+ + K+D +R ++   PL D  +  + + ++  E       D  A L  R+++L H++FLD   YNNVF
Sbjct:  106 IRAVLI-EARKQLETVPALLADEKFDGVRTLLTEAPLRDCWSKTTPILKKYAEALGDTDGDELAALEGREELLQHLRFLDMAVYNNVF 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5513.12990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LG73_ECTSI6.910e-4979.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R7QPP4_CHOCR1.660e-2238.74Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1Z5KBF4_FISSO8.960e-836.90Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448YYW4_9STRA2.980e-535.23Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5513contigH-paniculata_contig5513:5427..6435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004000.1
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.0228107-CDS-H-paniculata_contig5513:5426..56331622930577.0228107-CDS-H-paniculata_contig5513:5426..5633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5513 5427..5633 -
1691481355.9736373-CDS-H-paniculata_contig5513:5426..56331691481355.9736373-CDS-H-paniculata_contig5513:5426..5633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5513 5427..5633 -
1622930577.0486987-CDS-H-paniculata_contig5513:6303..64351622930577.0486987-CDS-H-paniculata_contig5513:6303..6435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5513 6304..6435 -
1691481355.9827683-CDS-H-paniculata_contig5513:6303..64351691481355.9827683-CDS-H-paniculata_contig5513:6303..6435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5513 6304..6435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5513.12990.1prot_H-paniculata_contig5513.12990.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5513 5427..6435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5513.12990.1

>prot_H-paniculata_contig5513.12990.1 ID=prot_H-paniculata_contig5513.12990.1|Name=mRNA_H-paniculata_contig5513.12990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
GIGLQAKLIGEARRQLDPVDKLITEAKWDAIRNIIKTYPLADMKNVISEL
SRQCDEQDSGALLGMRQDVLDHIQFLDSFSYNNVFVGEERQILGTKIDYD
TPRFGEISVNDG*
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mRNA from alignment at H-paniculata_contig5513:5427..6435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5513.12990.1 ID=mRNA_H-paniculata_contig5513.12990.1|Name=mRNA_H-paniculata_contig5513.12990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1009bp|location=Sequence derived from alignment at H-paniculata_contig5513:5427..6435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATTGGTTTGCAGGCGAAGCTCATCGGAGAGGCCCGGCGGCAGCTCGA
CCCTGTGGACAAGCTTATCACTGAAGCGAAGTGGGACGCAATCAGGAACA
TCATCAAGACTTACCCCTTAGCGGACATGAAAGTAAGTCGGCCTGCCTCT
TCCGACGATGACCCTGTATTTGAACAGTCCGTTGTTGTCGTCCCACCTAC
AAATCGACCAGAATCAACCAAGATCACACATACTTCGAACACTCGAGCAC
GATAGGGTGCCCCTGTCCGAGGTACCCCCCAGTGTACGCTCCAAACTTGC
TTACGCCTCGTTTTCAAGTAGAACGAGTTTAGTTATGATGAAGATGATTC
CCGCGTAGAGCACAGCGGGTTCGCTACTACGCAGAGGGCGGGGACGTCGA
AGAGGAAGGTAGAGCATGACCAGGACGCCTTTCACAAGGCATGAGCACTC
CTGGCGGATGGCAGTAGCTTAGATAAATTTCACTGCCTTTTTCTCGCTTT
TTTCGCGTTTTTAAAAAACGACGACTAAAAACCCGTCAACATACAGCTGA
GTATGCTTATTTTTGTTCGTGTCGTGCGTGCATTTGGAGGACTAGATGGT
TTCCCTCCAGATATTAGGCTTGAACCCCGCCCGAAAACACGTAGAATTAT
AAGGAAATAAAAAAAAAACTGGAAATGATGGATGCCTGCTACAAAATTAA
TCATCCTTACGGCACAGAGGAAGTATAAAAAATAGGACCACGTGCTGTAA
GAATGTAGATGCCTGCCCTGCACTCAGACGCCCGGCTACTCCACCCCCAC
AGAATGTCATATCCGAGCTGTCGAGGCAATGTGACGAACAAGATTCAGGG
GCGCTTCTGGGCATGCGGCAGGACGTGCTTGACCACATTCAGTTTCTGGA
TAGCTTCTCGTACAACAATGTTTTCGTCGGCGAAGAACGACAAATCTTGG
GGACGAAGATTGACTACGACACTCCAAGATTCGGTGAGATTTCAGTCAAT
GACGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5513:5427..6435-

>mRNA_H-paniculata_contig5513.12990.1 ID=mRNA_H-paniculata_contig5513.12990.1|Name=mRNA_H-paniculata_contig5513.12990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig5513:5427..6435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATTGGTTTGCAGGCGAAGCTCATCGGAGAGGCCCGGCGGCAGCTCGA
CCCTGTGGACAAGCTTATCACTGAAGCGAAGTGGGACGCAATCAGGAACA
TCATCAAGACTTACCCCTTAGCGGACATGAAAGGCATTGGTTTGCAGGCG
AAGCTCATCGGAGAGGCCCGGCGGCAGCTCGACCCTGTGGACAAGCTTAT
CACTGAAGCGAAGTGGGACGCAATCAGGAACATCATCAAGACTTACCCCT
TAGCGGACATGAAAAATGTCATATCCGAGCTGTCGAGGCAATGTGACGAA
CAAGATTCAGGGGCGCTTCTGGGCATGCGGCAGGACGTGCTTGACCACAT
TCAGTTTCTGGATAGCTTCTCGTACAACAATGTTTTCGTCGGCGAAGAAC
GACAAATCTTGGGGACGAAGATTGACTACGACACTCCAAGATTCGGTGAG
ATTTCAGTCAATGACGGGTAGAATGTCATATCCGAGCTGTCGAGGCAATG
TGACGAACAAGATTCAGGGGCGCTTCTGGGCATGCGGCAGGACGTGCTTG
ACCACATTCAGTTTCTGGATAGCTTCTCGTACAACAATGTTTTCGTCGGC
GAAGAACGACAAATCTTGGGGACGAAGATTGACTACGACACTCCAAGATT
CGGTGAGATTTCAGTCAATGACGGGTAG
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