mRNA_H-paniculata_contig5429.12877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5429.12877.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 7.200e-122 Identity = 451/1297 (34.77%), Postives = 633/1297 (48.80%), Query Frame = 1
Query: 1 HSQIQRMTVERASLRRRGAETECMLAKTAALLREVQGYIDGKEQGAIYTKIINALSVIRKRQVDERAVKMARARDRIEKENRARILKVLSAINF-SNVFMNDCLDGAPTYMRPLLAAFLRPEIKKAFLAYAKRVARAEDPDPSA-----AIAANTSTSSTGTPGAATMAKSKRLHPPRRVTLAVPPAAQVGIGGTNAPVADIARTIE---EGAEERRKAAFGDIPPRTS-----AVGVSRCSEARRGG-----------------------SGSKR-----------GSKE--MKWRLHGGDPVVNLTIGAQTNQPIDSSSRRLHSVLEMSKEGGLSGGVAETDRSMVGDRDKAATVRAPAQVAYERISILKEEEVRLDVRSRQAEHTHRQIEEKYEATETAARLAEENSAKKQRYRAVTMLLHIPISSVTRFEEELQATRLELIEAHDRVVELTQRAGKTTAARIEEESEHTAAVNATASGTLGATAT----GLEARQTAS*EEAALGAATTMGEMEESRDGEGNIDTCVVAKEAA--RKVEKAAKKELEVLVGLKAKAIQKLQAESVQSVVAAIELSLEKERAPDSEDVAQIEAYRVARKELKRTLASADIVEVSVALAEGLVLEREGAAL--------KWKRDREEVSSTEGLMAELEPTTQAADAEPVVVAAAFEALWNTEKAESNRRHIELLSEGLEASEIHDLQVLLSSLERQASDKIEDAILFLLVTRS-LRNPRKPSPPPFSHG-TIQETTAPADSRDPEAQWHADVLRQRIAGVSRAVEKKGGWRSAVLVND---EVNIDVDVGPWSPSDGVLMLNMVKSALVVQLEESQAKVQALEE-AIQSSGGGGLVAHLDATADLHRSVTLLWEGVGKVLKATLQVSFSTTTATAERVESPSATQKAATQDNHCCTPTALATNMGFIVNESSLAASSASATE---VVSMLNNQALVQIPMHLEDLPLDIAAEALTNDIDRVRAGGKFLVEGMLALSTLQQQLXXXXXXXXXXXXXXXXRSSAIVSTSPRDSPT-IAPPEQTVEVAPSSPVVQTSGRVSLPPVEEIPPTPDQDTRPSIPESSASEQRDVLDLRIPELELPSRQASSAGPSSEPPTTLRLFDEIDTSQQSDQSGSHPTLLSSRGSSLT-SQSEPSVAGGKVAAGNRDFSEKEEEDAKASGQTKINAAMDRVRAMEETTRGLREVAEERGAVIGLLRREIGELEATLLDAQERRSAWMDEMAPAADPILEGRLDEAMVTLGEEREVLANTTRKLDMAMNEKEHLRLTVEEAKVRVRE 3666
H QIQRMTVERASLRR+G +T +L+KT ALLREV G ID KE A YT++ LS IRKR++DERAVKM RARDRIE ENRARI K L+A+ S + L+ AP ++R +LA FL P +KAF+ Y KR AR E PSA +AN SS R ++L P G G T A A ++ +G E RR+ FGD+PP S A G R S A GG +G ++ GSK +WR H ++T+ A++ + S+R SK GG G T++ + AAT +A A + + +LD + + E RQ++E E A R E A A + P R EEEL+A ++ R+ EL+Q + TAAR E E + +AV AT G A + S A +TT+ S + G C A + E A KEL+ L+ K++A +KL S++S++ A++L +K + +D IE +VEVSVALAE + +REG AL + + D + S E L P A + WN EKA R + +LS+ LEAS+IHDLQVL SL+R+ D + A+ +RS + +++ T E A A++ D + +W A+VL R+ V RAVE+KGGWRSAV + EVN+DVDV PW +DGVLML V+ AL VQL ES++KV+ LE+ A GL HL+A ADLHR+VTLLWEGVG VLK+ + T AE + S T + QD PTA + ++ ++++A+++ A E ++ ML ++ +++PMHLEDLPL I AL+ DIDRV A K++V G+L + XXXXXXXXXXX + T P+D P + PP P++ V + P +E+PP D D R SS S Q ++ + ++ + A S E P+T D+ Q++ S T ++ L + + P++ + D S+ EE Q +++ A +R R MEET RGLR+V EER VI LL+REI +L+ L A P DP LE L +AMV LGEER LA+TT+KLD ++ E++ L V EA ++ R+
Sbjct: 947 HCQIQRMTVERASLRRQGVDTTNLLSKTEALLREVTGCIDQKENMATYTRVAELLSAIRKRKIDERAVKMNRARDRIEAENRARIEKALNALRLRSQDSVAGRLERAPAHLRGILAVFLDPSFQKAFVDYTKRFARGEVVLPSALHKQATSSANMFISSXXXXXXXXXXXXXXXXXRRAISLDYPETCP-GHGPTTPAAAAAAASVPALAKGLERRRQVMFGDLPPTKSEANMIASGKHRSSIAAPGGRNAGGKGGGAVGPDGVGVRRNQQTGKRKSRXXXXXSADGGSKNPGTQWRRHREGSDFSMTLTAES--AVGRSART------PSKGGGQGGAALVTEQGS----ETAATAQAAAVATAAALEEINVRVGQLDAQRKDLEGRERQLQEDLRFEEDAQR---ELGAMSDGVEAEAAKIDKPGPEKDRLEEELRAAISKVEAGAARLEELSQLSSAATAARKEAEDAYASAVXXXXXXXXXXKATMSVEGALASGSTSARSAGSSDSTTLAVATASPERAGETHPCSTASSSGMPNPAEIEATKELKGLMEAKSEAAKKLAGTSLESILTAVKLLRKKRTELNKDDRKGIEXXXXXXXXXXXXXXXXXMVEVSVALAEAALHKREGVALLKHHQRRKRQQGDHRRLRSKENLGNVSSPLGNTPAAVDTADEEMVDRCWNDEKAAETERRLAILSKSLEASDIHDLQVLRKSLQRELDD-VGSALRESKPSRSRVETTSAGEGEGYTYSSTAGEEPAAAETTDEDERWKAEVLAHRLDAVERAVERKGGWRSAVFLGKNGGEVNVDVDVEPWPAADGVLMLQTVRDALHVQLMESRSKVEELEDMAALVPSSEGLGGHLEAAADLHRAVTLLWEGVGDVLKS--RAENRTAEPPAEPLSSQELTPMSQVQDKP--RPTASDVSDTSVI-DNAIASTANGAGENDPILMMLQDEEFLEVPMHLEDLPLPIVTNALSVDIDRVTATTKYVVAGVLRQLSAXXXXXXXXXXXXXXXKYSAAEAHQRRGTLPQDPPNPVVPPSAVKASLPAANVP-----LGTPTPQELPP--DDDIR-----SSNSGQEELSEPASEKVSV----AGSEAEIEETPSTEDAGVNNDSGLQAEDDASTSTTRTATSEGLEDTTTSPALPPEPIP--EDDASDHEER----VTQAEVDEAWERAREMEETARGLRDVVEEREGVIDLLQREITDLKTALATADSGSRPSNTVETPFTDPHLEQELQKAMVALGEERAFLADTTQKLDTSLEERDRLLDEVAEANMKERQ 2199
BLAST of mRNA_H-paniculata_contig5429.12877.1 vs. uniprot
Match: A0A6H5KQR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR0_9PHAE) HSP 1 Score: 328 bits (842), Expect = 4.170e-89 Identity = 374/1186 (31.53%), Postives = 516/1186 (43.51%), Query Frame = 1
Query: 1 HSQIQRMTVERASLRRRGAETECMLAKTAALLREVQGYIDGKEQGAIYTKIINALSVIRKRQVDERAVKMARARDRIEKENRARILKVLSAINF-SNVFMNDCLDGAPTYMRPLLAAFLRPEIKKAFLAYAKRVARAEDPDPSAAIAANTSTSSTGTPGAATMAKSKRLH-------PPRRVTLAVPPAAQVGIGGTNAPVADIARTIE---EGAEERRKAAFGDIPPRTS-----AVGVSRCSEARRGGSGSKRGSKEM-----------------------------------KWRLH--GGDPVVNLTIGAQTNQPIDSSSRRLHSVLEMSKEGGLSGGVAETDRSMVGDRDKAATVRAPAQVAYERISILKEEEVRLDVRSRQAEHTHRQIEEKYEATETAARLAEENSAKKQRYRAVTMLLHIPISSVTRFEEELQATRLELIEAHDRVVELTQRAGKTTAARIEEESEHTAAVNATA-----------------SGTLGATATGLE-----ARQTAS*EEA--------------------------ALGAATTMGEMEESR----------------------------------------------------------DGEGNIDTCVV----------------------AKEAARKVEKAAK-------------------------------------------------------KELEVLVGLKAKAIQKLQAESVQSVVAAIELSLEKERAPDSEDVAQIEAYRVARKELKRTLASADIVEVSVALAEGLVLEREGAAL--------KWKRDREEVSSTEGLMAELEP------TTQAADAEPVVVAAAFEALWNTEKAESNRRHIELLSEGLEASEIHDLQVLLSSLERQASD-----KIEDAILFLLVTRSLRNPRKPSPPPFSHGTIQETTAPADSRDPEAQWHADVLRQRIAGVSRAVEKKGGWRSAVLVND---EVNIDVDVGPWSPSDGVLMLNMVKSALVVQLEESQAKVQALEE-AIQSSGGGGLVAHLDATADLHRSVTLLWEGVGKVLKATLQVSFSTTTATAERVESPSATQKAATQDNHCCTPTALATNMGFI-VNESSLAASSASATE---VVSMLNNQALVQIPMHLEDLPLDIAAEALTNDIDRVRAGGKFLVEGML 2769
H QIQRMTVERASLRR+G +T +L+KT ALLREV G ID KE YT++ LS IRKR++DERAVKM RARDRIE ENRARI K L+A+ S + L+ AP ++ +L+ FL P +KAFL YAKR AR E PSA TS+++ T ++ +S+++ PPRR P +G G T A A ++ G E RR+ FGD+PP S A G R S G + G + +WR H G D + LT T + S+R +GG+ GG A ++ + A AQ A EE ++VR Q + + +EE+ E + E A A + P R EEL+A + R+ EL+Q + T AR + E H +AV A SG+ A + G A TAS E A A AA G + E R +GE + T V AK A + AA KELE L+ K++ +KL S++S++ A++L +K + +D IEA + K L+RTLASAD+VEVSVALAE + +REGAAL + + D + S + L + P TT AD E V WN EKA R + +LS+ LEAS+IHDLQ+L SL+R+ D + F + T S + + +S +E A AD+ D + +W A+VL QR+ + RAVE+KGGWRSAV ++ EVN+DVDV PW +DGVLML V+ AL VQL ES++KV+ LE+ A GL HL+A ADLHR+VTLLWEGVG VLK+ + TAE P ++Q+ T P A+++ V ++++A+++ SA E ++ ML ++ ++IPMHLEDLPL I A + DIDRV A K++V G+L
Sbjct: 547 HCQIQRMTVERASLRRQGVDTANLLSKTEALLREVTGCIDQKENMPTYTRVAELLSAIRKRKIDERAVKMNRARDRIEAENRARIEKALNALRLRSQDSVAGRLERAPAHLHGILSVFLDPSFQKAFLDYAKRYARGEVVLPSALHKQATSSANMFT---SSSKESEKIAGDGGGNPPPRRAISLDYPETCLGHGPTTPTAAAAAASVPALANGLERRRQVMFGDLPPTKSEANMIAAGRHRSSLTAPGRNAGGEGGGTVGRDXXXXXXXXXXXXXXXXXXXXXXXXXGNKNPGTQWRRHREGSDFTMTLT----TESAVGRSART-------PSKGGVQGGAALVP-------EQGSETAATAQAAXXXXXAALEE---INVRVGQLDAQRQGLEER----EVGG--SRELGAMSDGLEAEAAKIDQPGPEKDRLREELRAVISKEEAGAARLEELSQLSSAATIARKKAEDAHASAVAEEAXXXXXXXXXXXXXXXXXSGSTSARSGGSGDSTNLAMATASPERAGEASENAPEGRTITKEELAAEPSPSGATSAAAADGSVREKRQDRVLDSKRPAARRPASNVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADDGTVNGEAIVPTTVATAAATATESLTLHPVFAHMERKAKSAEASIAAAASVVEMTLEAEALAEKMSACKGKLEAAAAAEAPATKAHRYSSTSSSGMPNPGEIEATKELEELIESKSEVAKKLAGTSLESILTAVKLLGKKRNELNKDDREGIEANKATEKALERTLASADMVEVSVALAEASLHKREGAALLKHHXXXXRQQGDHGSLRSEKSLGSASSPPGNTPATTGTADEEMVG------RYWNDEKAAETERRLAILSKSLEASDIHDLQILRKSLQRELDDAGSALRESKPSRFRVETTSAGEGEEHT---YSSTAGEEPAAAADTADEDGRWKAEVLAQRVDAIERAVERKGGWRSAVFLDKNGGEVNVDVDVEPWPAADGVLMLQTVRDALNVQLIESRSKVEELEDMAALVPSSEGLEGHLEAAADLHRAVTLLWEGVGDVLKSRAEKR------TAEPPAEPLSSQELTTMSQAQGKPRPTASDVSDTPVIDNAIASTANSAEENDPILKMLQDEEFLEIPMHLEDLPLPIVTNAFSVDIDRVTAITKYVVAGLL 1687 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5429.12877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5429.12877.1 >prot_H-paniculata_contig5429.12877.1 ID=prot_H-paniculata_contig5429.12877.1|Name=mRNA_H-paniculata_contig5429.12877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=763bp MGEMEESRDGEGNIDTCVVAKEAARKVEKAAKKELEVLVGLKAKAIQKLQback to top mRNA from alignment at H-paniculata_contig5429:364..8600- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5429.12877.1 ID=mRNA_H-paniculata_contig5429.12877.1|Name=mRNA_H-paniculata_contig5429.12877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8237bp|location=Sequence derived from alignment at H-paniculata_contig5429:364..8600- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5429:364..8600- >mRNA_H-paniculata_contig5429.12877.1 ID=mRNA_H-paniculata_contig5429.12877.1|Name=mRNA_H-paniculata_contig5429.12877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4578bp|location=Sequence derived from alignment at H-paniculata_contig5429:364..8600- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |