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Homology
BLAST of mRNA_H-paniculata_contig54.12833.1 vs. uniprot
Match: D7G8K9_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K9_ECTSI) HSP 1 Score: 171 bits (432), Expect = 6.680e-44 Identity = 129/333 (38.74%), Postives = 167/333 (50.15%), Query Frame = 3
Query: 987 RRSVPVLDWWRSQRLRSTPDGKTVVSVGSSRNELSPPRIMAPPHKIVRPKSAAAHAIAQKQNRPKINGDGTSDSEVPLWTKAQLECLHVAHMGTAPTAKDFWDVVASSVDGKDPSECQQKWFEHFATPKVRRRQAKTKRVSPEELGTP----LAVKTPPSRILGTADYDSVVAPGQPVTAQADPDDLFQATPMRGRRRVRVEPAGSSSGPSTPKTPPGPDTLSEDGGLVLEDNQGNGQDGSKRVVSRAYVQAMSKKMRKVSANP-RNIRGSKSVGRQPP---VKPRRVHATTLSGGRTIRASVASSGVVNVTCA-GSDDNESELSSSCGSDSD 1958
R + PVLDWWRSQRL TP +V VG++R L P S HA R K G + E P WTKAQ+ L A TAP+ FW VA +VDG++P ECQQKWFEHFATP+ R R A + + +GTP ++ TP A Y S+ AP + + DDLFQATP+RG RR V+ G TP+TP GP D L+ G KR VSR YV+A+SK+MRK + +N + ++ + P V R H +SGG ++ V+ SG V+V SDD S +S SD D
Sbjct: 28 RGAAPVLDWWRSQRLTKTP---SVGVVGAARFPLGQP-------------STGNHADMDSACRLKTVGRDANGEEEP-WTKAQMHSLRRAQAETAPSTSAFWSAVACNVDGRNPQECQQKWFEHFATPRGRSRNASARGCISQRIGTPPSDDMSRNTP-----AAAAYRSL-APAKQTPERGASDDLFQATPIRGHRRFGVQARGDVLDTRTPRTPAGPGAPCRDSS-ALDAAPGCEDADYKRGVSRKYVKALSKRMRKGALQSGKNRKAARGQAIRKPASVVAGRTTHTAAVSGGHKLQVCVSGSGAVSVQSTYNSDDGASSVSDDVESDDD 336
BLAST of mRNA_H-paniculata_contig54.12833.1 vs. uniprot
Match: A0A7S4DBM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBM9_HETAK) HSP 1 Score: 82.4 bits (202), Expect = 5.710e-13 Identity = 53/136 (38.97%), Postives = 65/136 (47.79%), Query Frame = 3
Query: 969 KTTLSGRRSVPVLDWWRSQRLRSTPDGKTVVSVGSSRNELSPPRIMAPPHKIVRPKSAAAHAIAQKQNRPKINGDGTSDSEVPLWTKAQLECLHVAHMGTAPTAKDFWDVVASSVDGKDPSECQQKWFEHFATPKV 1376
++T SGR++ VL+WWR QRL S T+V+VGS S R + HK SD W+ Q+E L AH T P DFW VA VDGK+ SEC KWFE +ATPKV
Sbjct: 33 RSTRSGRKTTSVLEWWRGQRLVSGVQD-TLVAVGSE----STVRFL---HK--------------------------SDDRSKRWSHVQIEQLQHAHSTTDPLVGDFWKKVAKHVDGKNDSECHDKWFEQYATPKV 134
BLAST of mRNA_H-paniculata_contig54.12833.1 vs. uniprot
Match: A0A835YWZ7_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.010e-5 Identity = 78/282 (27.66%), Postives = 106/282 (37.59%), Query Frame = 3
Query: 975 TLSGRRSVPVLDWWRSQRLRSTPDGKTVVSVGSSRNELSPPRIMAPPHKIVRPKSAAAHAIAQKQNRPKINGDGTSDSEVPLWTKAQLECLHVAHMGTAPTAKDFWDVVASSVDGKDPSECQQKWF----EHF--ATPKVRRRQAKTKRVSPEELG-TPLAVKTPPSRILGTADYDS---------VVAPGQPVTAQADP-DDLFQATP-MRGRRRVRVEPAGSSSGP-----STPKTPPGPDTLSEDGGLVLEDNQGNGQDGSKRVVSRAYVQAMSKKMRK 1751
T SGR+ VPVL+WWRSQRL PD NGD WT+ Q L A + T P +FW VA V GK +C Q+WF EH A + QA TKR + TP A P + TA S A +++QA DD+FQ + +G+++ ++ G S P +T TP + G Q VS++Y+ A+SK+MRK
Sbjct: 538 TRSGRKRVPVLEWWRSQRLSVGPDS---------------------------------------------NGDE--------WTEQQEALLQQAQLRTDPGHANFWVQVAKGVPGKSAGQCSQRWFAQLEEHNDGAGGTSKGNQAGTKRKRGKSAAATPSAQDKPAASAAKTAQAASKGGKRGQTRAAAIASYLSSQAGHMDDVFQDSGGAQGKKKRKLSVPGVVSLPPNTLGATVPTPKAQGKTGKAGKSPANARQSQASGN----VSKSYMVAVSKRMRK 762
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 91.7 |
| Seed ortholog evalue | 1.4e-15 |
| Seed eggNOG ortholog | 115417.EPrPW00000018983 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Chromosome 14 open reading frame 106. Source PGD |
| EggNOG OGs | 1MFCY@121069,2CXA2@1,2RWRQ@2759 |
| COG Functional cat. | S |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 2085 |
| Cds size | 1893 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54.12833.1 >prot_H-paniculata_contig54.12833.1 ID=prot_H-paniculata_contig54.12833.1|Name=mRNA_H-paniculata_contig54.12833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp
MADHDPLGSAAVAHHVQYGTVRSPVPQMLPRAQSLGCPIPVYANAFGART FCRAKSLPPPTKLDTSRSSISAGEVLGRNRRSVEAFRAASVCEDAQHRFL ELCNARPLSEMFVSSMIPIFAAESREEGSSVGKCCPPACSDVEDRRSPRK YEAHSTRSSSPDAKMNIDDTNDSPENTVNCCKNQRIPSPPGTIDTAGPSE CQRNTTGMKPKSDITVPSTACRKKGGGLLVPTRKEDRTLGMMNTLHRAGG EELNVTKRATSSRARGVGPQNSVCGTARARVGGQSKAASNNVDTNVWKTT LSGRRSVPVLDWWRSQRLRSTPDGKTVVSVGSSRNELSPPRIMAPPHKIV RPKSAAAHAIAQKQNRPKINGDGTSDSEVPLWTKAQLECLHVAHMGTAPT AKDFWDVVASSVDGKDPSECQQKWFEHFATPKVRRRQAKTKRVSPEELGT PLAVKTPPSRILGTADYDSVVAPGQPVTAQADPDDLFQATPMRGRRRVRV EPAGSSSGPSTPKTPPGPDTLSEDGGLVLEDNQGNGQDGSKRVVSRAYVQ AMSKKMRKVSANPRNIRGSKSVGRQPPVKPRRVHATTLSGGRTIRASVAS SGVVNVTCAGSDDNESELSSSCGSDSDSDN* back to topmRNA from alignment at H-paniculata_contig54:20042..22691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig54.12833.1 ID=mRNA_H-paniculata_contig54.12833.1|Name=mRNA_H-paniculata_contig54.12833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2650bp|location=Sequence derived from alignment at H-paniculata_contig54:20042..22691+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CTGTACTGTTTGTTGCATGTGCCCTGAGTCTCTCCTACCCTGCATGAAAG
CTGGTGAGTGCCCCACCCAAAATGATTTGACGAGATTACTATTCCTATCC
TGTAAATTCTATCAACCACCAACAACAGCATGCCCTGTTTGCCTAGGTTT
TCGAAAATGCTTCGTCTAGACCGTTGACCCCTTTAGGGCTGGACGCTTTT
TGGGAACTGTTTTGGAGCAAAAAAGGCATCCAACATCTATCTGACAACTG
TTGTTTGTCGGGCGCTGCAGTCGTTGTGGGCAGAACTACCTGTTTGTGAT
TCGTGCATTTTTTTTTATTGGTCTATCTGCCTGGGCAGCAGTGGCTCCCC
ATCTCCGTAATAGTTTCACAGGCGTCGTTTTCCCATGCGAACGTATTTGA
CTGTGCTGCACTCTGATTTTTTAGGTACAGTCTGTCTTAAAATGAGTCTG
TTTGAAAAGCGGCTGCTCTTTATTCCAATAATGATGTACGTTATACGCGT
TGTTTTACTCCTTTTTGAGATAAGGTTCAGATGAAGGTTACTCTACAAGT
AGATGGCAACCAGCGCTAAAGGGTCGAATTTACTTTTGATCGTGTTCCAA
CTCACCTACTCTTGTCAGGTGCAATTGAGGAACCGACAGCAAATGGCAGA
TCATGATCCTCTGGGATCGGCGGCAGTAGCTCATCATGTACAATATGGCA
CTGTTCGGTCTCCTGTTCCGCAGATGTTGCCGCGTGCTCAAAGTCTTGGT
TGCCCAATTCCTGTGTATGCCAACGCCTTTGGCGCCAGGACGTTTTGTCG
TGCCAAGAGTCTGCCGCCGCCAACAAAGCTTGACACTTCCAGATCATCAA
TATCTGCCGGCGAAGTTCTCGGCCGCAACAGGAGATCTGTAGAGGCGTTC
AGGGCGGCGTCAGTATGTGAGGATGCTCAGCACAGATTTCTAGAATTGTG
TAACGCCCGGCCTTTGTCGGAGATGTTTGTATCAAGCATGATCCCTATCT
TTGCGGCTGAATCGCGGGAGGAGGGTTCATCAGTCGGCAAATGCTGTCCA
CCGGCTTGCTCCGATGTAGAGGACAGAAGGTCGCCACGAAAATATGAGGC
GCATTCTACGCGTAGCTCTTCCCCGGACGCGAAGATGAACATAGATGACA
CCAACGACTCTCCTGAGAATACCGTCAATTGCTGCAAGAATCAGCGAATA
CCCTCGCCACCTGGCACAATCGATACAGCTGGACCCTCGGAATGTCAACG
CAACACGACGGGCATGAAGCCAAAATCGGATATCACAGTACCCTCGACAG
CCTGTCGAAAAAAGGGAGGCGGGTTGTTGGTGCCGACTCGGAAGGAAGAT
CGGACACTTGGGATGATGAACACATTGCATCGTGCTGGCGGTGAGGAGTT
GAATGTAACCAAGAGAGCAACTTCTTCACGTGCTCGCGGTGTTGGACCTC
AAAACAGTGTTTGCGGAACAGCAAGAGCACGAGTCGGCGGACAATCGAAG
GCGGCGTCCAATAATGTAGATACAAATGTGTGGAAAACTACGCTGAGCGG
GCGTCGGTCGGTACCGGTTTTGGATTGGTGGCGCAGTCAACGCCTTAGGA
GCACCCCAGATGGAAAGACTGTGGTGTCTGTCGGATCCTCTCGAAATGAA
CTCTCTCCACCAAGGATTATGGCACCTCCCCATAAAATCGTCAGGCCCAA
GAGTGCAGCAGCTCACGCCATTGCGCAAAAGCAGAATAGGCCGAAGATAA
ATGGCGACGGGACCTCAGACAGTGAAGTACCGTTGTGGACGAAAGCGCAA
CTCGAGTGTCTGCATGTTGCACACATGGGCACAGCTCCTACCGCAAAAGA
CTTCTGGGATGTTGTTGCCAGCAGTGTTGATGGCAAGGATCCAAGTGAGT
GCCAGCAGAAATGGTTCGAGCATTTTGCAACGCCAAAGGTGCGACGAAGA
CAAGCGAAAACGAAACGTGTAAGTCCTGAGGAACTTGGCACACCTTTGGC
AGTCAAAACGCCCCCCTCAAGGATTTTGGGTACAGCTGACTACGATTCTG
TCGTGGCACCGGGTCAACCGGTGACAGCACAGGCAGACCCTGACGACTTG
TTCCAAGCGACGCCGATGCGGGGGCGACGGCGTGTGCGTGTAGAGCCTGC
TGGGAGTTCTTCGGGACCTAGTACCCCGAAGACACCTCCTGGCCCTGACA
CATTGTCTGAGGACGGAGGTCTAGTGCTGGAAGACAATCAAGGGAACGGA
CAGGACGGCTCCAAGCGAGTAGTCAGTAGAGCTTATGTGCAGGCCATGTC
GAAGAAGATGCGGAAGGTATCTGCAAACCCGCGTAACATTCGTGGTAGTA
AATCTGTTGGACGGCAGCCTCCAGTCAAACCGCGCAGAGTACATGCGACC
ACATTGTCAGGGGGGCGTACCATTCGTGCTTCCGTAGCCAGTTCAGGCGT
TGTGAATGTCACATGCGCTGGAAGCGATGACAACGAGAGCGAGTTGAGTT
CGTCCTGTGGCAGTGATAGTGACAGTGATAATTAATAGCGCTAACGAGTT
GAACCCAGTACAGTTCGCGAGTACGCCCTCGTCAAAATTGCGCTTAATCG
CGAGCATGCATACCAACCAAGCAACGACTCGATTTCTTCGGCGCTTATAC
back to topCoding sequence (CDS) from alignment at H-paniculata_contig54:20042..22691+ >mRNA_H-paniculata_contig54.12833.1 ID=mRNA_H-paniculata_contig54.12833.1|Name=mRNA_H-paniculata_contig54.12833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig54:20042..22691+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCAGATCATGATCCTCTGGGATCGGCGGCAGTAGCTCATCATGTACA ATATGGCACTGTTCGGTCTCCTGTTCCGCAGATGTTGCCGCGTGCTCAAA GTCTTGGTTGCCCAATTCCTGTGTATGCCAACGCCTTTGGCGCCAGGACG TTTTGTCGTGCCAAGAGTCTGCCGCCGCCAACAAAGCTTGACACTTCCAG ATCATCAATATCTGCCGGCGAAGTTCTCGGCCGCAACAGGAGATCTGTAG AGGCGTTCAGGGCGGCGTCAGTATGTGAGGATGCTCAGCACAGATTTCTA GAATTGTGTAACGCCCGGCCTTTGTCGGAGATGTTTGTATCAAGCATGAT CCCTATCTTTGCGGCTGAATCGCGGGAGGAGGGTTCATCAGTCGGCAAAT GCTGTCCACCGGCTTGCTCCGATGTAGAGGACAGAAGGTCGCCACGAAAA TATGAGGCGCATTCTACGCGTAGCTCTTCCCCGGACGCGAAGATGAACAT AGATGACACCAACGACTCTCCTGAGAATACCGTCAATTGCTGCAAGAATC AGCGAATACCCTCGCCACCTGGCACAATCGATACAGCTGGACCCTCGGAA TGTCAACGCAACACGACGGGCATGAAGCCAAAATCGGATATCACAGTACC CTCGACAGCCTGTCGAAAAAAGGGAGGCGGGTTGTTGGTGCCGACTCGGA AGGAAGATCGGACACTTGGGATGATGAACACATTGCATCGTGCTGGCGGT GAGGAGTTGAATGTAACCAAGAGAGCAACTTCTTCACGTGCTCGCGGTGT TGGACCTCAAAACAGTGTTTGCGGAACAGCAAGAGCACGAGTCGGCGGAC AATCGAAGGCGGCGTCCAATAATGTAGATACAAATGTGTGGAAAACTACG CTGAGCGGGCGTCGGTCGGTACCGGTTTTGGATTGGTGGCGCAGTCAACG CCTTAGGAGCACCCCAGATGGAAAGACTGTGGTGTCTGTCGGATCCTCTC GAAATGAACTCTCTCCACCAAGGATTATGGCACCTCCCCATAAAATCGTC AGGCCCAAGAGTGCAGCAGCTCACGCCATTGCGCAAAAGCAGAATAGGCC GAAGATAAATGGCGACGGGACCTCAGACAGTGAAGTACCGTTGTGGACGA AAGCGCAACTCGAGTGTCTGCATGTTGCACACATGGGCACAGCTCCTACC GCAAAAGACTTCTGGGATGTTGTTGCCAGCAGTGTTGATGGCAAGGATCC AAGTGAGTGCCAGCAGAAATGGTTCGAGCATTTTGCAACGCCAAAGGTGC GACGAAGACAAGCGAAAACGAAACGTGTAAGTCCTGAGGAACTTGGCACA CCTTTGGCAGTCAAAACGCCCCCCTCAAGGATTTTGGGTACAGCTGACTA CGATTCTGTCGTGGCACCGGGTCAACCGGTGACAGCACAGGCAGACCCTG ACGACTTGTTCCAAGCGACGCCGATGCGGGGGCGACGGCGTGTGCGTGTA GAGCCTGCTGGGAGTTCTTCGGGACCTAGTACCCCGAAGACACCTCCTGG CCCTGACACATTGTCTGAGGACGGAGGTCTAGTGCTGGAAGACAATCAAG GGAACGGACAGGACGGCTCCAAGCGAGTAGTCAGTAGAGCTTATGTGCAG GCCATGTCGAAGAAGATGCGGAAGGTATCTGCAAACCCGCGTAACATTCG TGGTAGTAAATCTGTTGGACGGCAGCCTCCAGTCAAACCGCGCAGAGTAC ATGCGACCACATTGTCAGGGGGGCGTACCATTCGTGCTTCCGTAGCCAGT TCAGGCGTTGTGAATGTCACATGCGCTGGAAGCGATGACAACGAGAGCGA GTTGAGTTCGTCCTGTGGCAGTGATAGTGACAGTGATAATTAAATGGCAG ATCATGATCCTCTGGGATCGGCGGCAGTAGCTCATCATGTACAATATGGC ACTGTTCGGTCTCCTGTTCCGCAGATGTTGCCGCGTGCTCAAAGTCTTGG TTGCCCAATTCCTGTGTATGCCAACGCCTTTGGCGCCAGGACGTTTTGTC GTGCCAAGAGTCTGCCGCCGCCAACAAAGCTTGACACTTCCAGATCATCA ATATCTGCCGGCGAAGTTCTCGGCCGCAACAGGAGATCTGTAGAGGCGTT CAGGGCGGCGTCAGTATGTGAGGATGCTCAGCACAGATTTCTAGAATTGT GTAACGCCCGGCCTTTGTCGGAGATGTTTGTATCAAGCATGATCCCTATC TTTGCGGCTGAATCGCGGGAGGAGGGTTCATCAGTCGGCAAATGCTGTCC ACCGGCTTGCTCCGATGTAGAGGACAGAAGGTCGCCACGAAAATATGAGG CGCATTCTACGCGTAGCTCTTCCCCGGACGCGAAGATGAACATAGATGAC ACCAACGACTCTCCTGAGAATACCGTCAATTGCTGCAAGAATCAGCGAAT ACCCTCGCCACCTGGCACAATCGATACAGCTGGACCCTCGGAATGTCAAC GCAACACGACGGGCATGAAGCCAAAATCGGATATCACAGTACCCTCGACA GCCTGTCGAAAAAAGGGAGGCGGGTTGTTGGTGCCGACTCGGAAGGAAGA TCGGACACTTGGGATGATGAACACATTGCATCGTGCTGGCGGTGAGGAGT TGAATGTAACCAAGAGAGCAACTTCTTCACGTGCTCGCGGTGTTGGACCT CAAAACAGTGTTTGCGGAACAGCAAGAGCACGAGTCGGCGGACAATCGAA GGCGGCGTCCAATAATGTAGATACAAATGTGTGGAAAACTACGCTGAGCG GGCGTCGGTCGGTACCGGTTTTGGATTGGTGGCGCAGTCAACGCCTTAGG AGCACCCCAGATGGAAAGACTGTGGTGTCTGTCGGATCCTCTCGAAATGA ACTCTCTCCACCAAGGATTATGGCACCTCCCCATAAAATCGTCAGGCCCA AGAGTGCAGCAGCTCACGCCATTGCGCAAAAGCAGAATAGGCCGAAGATA AATGGCGACGGGACCTCAGACAGTGAAGTACCGTTGTGGACGAAAGCGCA ACTCGAGTGTCTGCATGTTGCACACATGGGCACAGCTCCTACCGCAAAAG ACTTCTGGGATGTTGTTGCCAGCAGTGTTGATGGCAAGGATCCAAGTGAG TGCCAGCAGAAATGGTTCGAGCATTTTGCAACGCCAAAGGTGCGACGAAG ACAAGCGAAAACGAAACGTGTAAGTCCTGAGGAACTTGGCACACCTTTGG CAGTCAAAACGCCCCCCTCAAGGATTTTGGGTACAGCTGACTACGATTCT GTCGTGGCACCGGGTCAACCGGTGACAGCACAGGCAGACCCTGACGACTT GTTCCAAGCGACGCCGATGCGGGGGCGACGGCGTGTGCGTGTAGAGCCTG CTGGGAGTTCTTCGGGACCTAGTACCCCGAAGACACCTCCTGGCCCTGAC ACATTGTCTGAGGACGGAGGTCTAGTGCTGGAAGACAATCAAGGGAACGG ACAGGACGGCTCCAAGCGAGTAGTCAGTAGAGCTTATGTGCAGGCCATGT CGAAGAAGATGCGGAAGGTATCTGCAAACCCGCGTAACATTCGTGGTAGT AAATCTGTTGGACGGCAGCCTCCAGTCAAACCGCGCAGAGTACATGCGAC CACATTGTCAGGGGGGCGTACCATTCGTGCTTCCGTAGCCAGTTCAGGCG TTGTGAATGTCACATGCGCTGGAAGCGATGACAACGAGAGCGAGTTGAGT TCGTCCTGTGGCAGTGATAGTGACAGTGATAATTAA back to top
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