mRNA_H-paniculata_contig5368.12789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5368.12789.1
Unique NamemRNA_H-paniculata_contig5368.12789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 7.600e-116
Identity = 176/185 (95.14%), Postives = 179/185 (96.76%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCCG 555
            SSIMLRFTDDTFD+HLQSTIGVDFKVKM+D  GKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLE SAKTKVGV+QVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNP Q GGG CCG
Sbjct:   26 SSIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLEASAKTKVGVKQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPNQAGGGLCCG 210          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA)

HSP 1 Score: 280 bits (715), Expect = 1.210e-86
Identity = 144/186 (77.42%), Postives = 160/186 (86.02%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVD--PSRPNPYQGGGGFCC 552
            SSIMLRFTDD+FD+ LQSTIGVDFKVKM++   K+IKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDV RPETFDNL+KWLEEVETYHPGRGR+VVKLLVGNKVD  R V R QAE +ARSKGMLFLE SAKT+VG+RQ FEEVV KIL++P+LLANT PG+PR TVD   ++  P  G GG  C
Sbjct:   24 SSIMLRFTDDSFDDKLQSTIGVDFKVKMMEVGDKKIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVERPETFDNLNKWLEEVETYHPGRGRDVVKLLVGNKVDCPRAVPREQAEAWARSKGMLFLEASAKTEVGIRQAFEEVVHKILESPALLANTTPGKPR-TVDLAATQNTPPSGAGGCGC 208          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A4D9D7L4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7L4_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.630e-82
Identity = 136/184 (73.91%), Postives = 155/184 (84.24%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SSI+LRFTDD FD+H QSTIGVDFKVKM++   KRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R E+F+NL+ WL+EVE Y  G GRE+VK+LVGNKVDKER+V R +AE +ARSKGMLFLE SAKT+ G+RQVF EVVQKILDNPSLL NTAPGRPR  V+       +G GG+CC
Sbjct:   26 SSILLRFTDDAFDDHQQSTIGVDFKVKMIEVDHKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVNRRESFENLNHWLQEVEVYSTGGGREIVKVLVGNKVDKERMVPREEAEAWARSKGMLFLEASAKTRTGIRQVFLEVVQKILDNPSLLTNTAPGRPR--VNLQADAAAKGSGGYCC 207          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC)

HSP 1 Score: 269 bits (687), Expect = 1.860e-82
Identity = 135/186 (72.58%), Postives = 155/186 (83.33%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPN--PYQGGGGFCC 552
            SS++LRFTDDTFD+HLQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R ETF+NL  WL+EVE Y P  GR+VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKTK+G++QVF EVVQKILDNP+LLANTAP      V+ S     P+   GG CC
Sbjct:   26 SSMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRQEGEAWARSKGMLFVESSAKTKIGIQQVFNEVVQKILDNPALLANTAPRSRAKKVNLSADKYAPHANAGGGCC 211          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: K3WMM1_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WMM1_GLOUD)

HSP 1 Score: 262 bits (670), Expect = 4.610e-80
Identity = 131/184 (71.20%), Postives = 155/184 (84.24%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SS++LRFTDDTFD++LQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL  WL+EVE Y P  G++VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL  T P R  D    S  +   GGGG CC
Sbjct:   21 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGKDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLGTTRP-RTNDRATLSGKDGKSGGGGGCC 203          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT)

HSP 1 Score: 260 bits (665), Expect = 2.440e-79
Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SS++LRFTDDTFD++LQSTIGVDFKVKM+   GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL  WL+EVE Y P  GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP      +D        GGG  CC
Sbjct:   21 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRSRGRKLDAKAEK--SGGGNGCC 202          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A6A3N672_9STRA (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3N672_9STRA)

HSP 1 Score: 260 bits (665), Expect = 9.290e-79
Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SS++LRFTDDTFD++LQSTIGVDFKVKM+   GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL  WL+EVE Y P  GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP      +D        GGG  CC
Sbjct:   61 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRNRGRKLDGKAEK--SGGGSGCC 242          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A6G0KMK3_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6G0KMK3_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.630e-78
Identity = 130/184 (70.65%), Postives = 155/184 (84.24%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SS++LRFTDDTFD++LQSTIGVDFKVKM+   GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL  WL+EVE Y P  GR+VVKLLVGNK+DKERVV+R +AE++ARSKGMLF+E+SAKTK+G++QVF EVVQKIL+NP+LL+NTAP      +D        GGG  CC
Sbjct:   78 SSMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVKLLVGNKIDKERVVSRREAEDWARSKGMLFVESSAKTKIGIQQVFNEVVQKILENPALLSNTAPRNRGRKLDGKAEK--SGGGSGCC 259          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A024TX33_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX33_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.520e-77
Identity = 130/184 (70.65%), Postives = 151/184 (82.07%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SS++LRFT+DTFD+HLQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF NL  WL+EVE Y P  GR+VVKLLVGNK+DKERVV+R + E +ARSKGMLF+E+SAKTK G++QVF EVVQKILDNP+LL+NTAP      +D +   P    G  CC
Sbjct:   43 SSMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVKLLVGNKIDKERVVSRREGEAWARSKGMLFVESSAKTKTGIQQVFNEVVQKILDNPTLLSNTAPKSRVAKLDLADARPAASSG--CC 224          
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Match: A0A7S2CPE8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPE8_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.680e-77
Identity = 123/184 (66.85%), Postives = 154/184 (83.70%), Query Frame = 1
Query:    1 SSIMLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGNKVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNPSLLANTAPGRPRDTVDPSRPNPYQGGGGFCC 552
            SSIMLRF DD FD+H+ STIGVDFKVKM+++ GKR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDVTR +TF++L +WL+E+E Y PG GREVVKLLVGNK D+E VV R +A E+ARSKGM+FLETSAKT +G++Q F+EVV+K+LDNP L+ NT+PG+P+  ++ ++        G CC
Sbjct:   44 SSIMLRFCDDHFDQHIGSTIGVDFKVKMMNRRGKRVKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRADTFESLDQWLQELEVYCPGGGREVVKLLVGNKKDQESVVERDRAMEWARSKGMIFLETSAKTDMGIKQAFQEVVEKVLDNPMLMVNTSPGKPKVELNKAKGQNENRNSGACC 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5368.12789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G245_ECTSI7.600e-11695.14Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YPZ0_9STRA1.210e-8677.42Rab18, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A4D9D7L4_9STRA1.630e-8273.91Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A067C8B0_SAPPC1.860e-8272.58Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
K3WMM1_GLOUD4.610e-8071.20Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
D0NMU9_PHYIT2.440e-7970.65Rab18 family GTPase, putative n=6 Tax=Oomycota Tax... [more]
A0A6A3N672_9STRA9.290e-7970.65Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]
A0A6G0KMK3_9STRA1.630e-7870.65Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A024TX33_9STRA1.520e-7770.65Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A7S2CPE8_9STRA1.680e-7766.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5368contigH-paniculata_contig5368:159..8524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue2.7e-94
Seed eggNOG ortholog2880.D7G245
Preferred nameRAB18
KEGG koko:K07910,ko:K07976,ko:K17506
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001654,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006913,GO:0006955,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008092,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0023052,GO:0030141,GO:0030659,GO:0030667,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034389,GO:0035556,GO:0036094,GO:0036230,GO:0042119,GO:0042175,GO:0042579,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060322,GO:0065007,GO:0071782,GO:0071786,GO:0071840,GO:0071944,GO:0080115,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:1901265,GO:1901363
EggNOG free text desc.myosin XI tail binding
EggNOG OGsKOG0080@1,KOG0080@2759
Ec32 ortholog descriptionRab18, RAB family GTPase
Ec32 orthologEc-09_003840.1
EC3.1.3.16
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko04031,ko04131
Exons5
Model size2077
Cds size549
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.7899299-UTR-H-paniculata_contig5368:158..1671622930547.7899299-UTR-H-paniculata_contig5368:158..167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5368 159..167 +
1691481343.2058194-UTR-H-paniculata_contig5368:158..1671691481343.2058194-UTR-H-paniculata_contig5368:158..167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5368 159..167 +
1622930547.8886979-UTR-H-paniculata_contig5368:7005..85241622930547.8886979-UTR-H-paniculata_contig5368:7005..8524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5368 7006..8524 +
1691481343.2681766-UTR-H-paniculata_contig5368:7005..85241691481343.2681766-UTR-H-paniculata_contig5368:7005..8524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5368 7006..8524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.809353-CDS-H-paniculata_contig5368:167..2331622930547.809353-CDS-H-paniculata_contig5368:167..233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 168..233 +
1691481343.2189417-CDS-H-paniculata_contig5368:167..2331691481343.2189417-CDS-H-paniculata_contig5368:167..233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 168..233 +
1622930547.8277812-CDS-H-paniculata_contig5368:2786..29071622930547.8277812-CDS-H-paniculata_contig5368:2786..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 2787..2907 +
1691481343.2272658-CDS-H-paniculata_contig5368:2786..29071691481343.2272658-CDS-H-paniculata_contig5368:2786..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 2787..2907 +
1622930547.8451984-CDS-H-paniculata_contig5368:4849..49381622930547.8451984-CDS-H-paniculata_contig5368:4849..4938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 4850..4938 +
1691481343.235738-CDS-H-paniculata_contig5368:4849..49381691481343.235738-CDS-H-paniculata_contig5368:4849..4938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 4850..4938 +
1622930547.861018-CDS-H-paniculata_contig5368:5735..58421622930547.861018-CDS-H-paniculata_contig5368:5735..5842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 5736..5842 +
1691481343.2450328-CDS-H-paniculata_contig5368:5735..58421691481343.2450328-CDS-H-paniculata_contig5368:5735..5842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 5736..5842 +
1622930547.8739066-CDS-H-paniculata_contig5368:6839..70051622930547.8739066-CDS-H-paniculata_contig5368:6839..7005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 6840..7005 +
1691481343.2543993-CDS-H-paniculata_contig5368:6839..70051691481343.2543993-CDS-H-paniculata_contig5368:6839..7005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5368 6840..7005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5368.12789.1prot_H-paniculata_contig5368.12789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5368 168..7005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5368.12789.1

>prot_H-paniculata_contig5368.12789.1 ID=prot_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MLRFTDDTFDEHLQSTIGVDFKVKMLDKAGKRIKMTIWDTAGQERFRTLT
SSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVKLLVGN
KVDKERVVTRAQAEEYARSKGMLFLETSAKTKVGVRQVFEEVVQKILDNP
SLLANTAPGRPRDTVDPSRPNPYQGGGGFCCG*
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mRNA from alignment at H-paniculata_contig5368:159..8524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5368.12789.1 ID=mRNA_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8366bp|location=Sequence derived from alignment at H-paniculata_contig5368:159..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGCATCATGCTGCGATTCACTGATGACACTTTTGACGAACACTTGCA GAGCACCATCGGGGTTGACTTTAAGGTGAGATTTGCTCTTTTGCGAACCG GTTGCTTCACTACCCTGTATAGTAGATTACCACCAATCCAATGAGAGCCA ATGGATGCGCACAGTTGCAAAGATCGTGAAAGCACAGAACATTTACAATG GTATCCAGTAGTTCGGGAGAAAACACCGGGGATGATCACTCTGTGATGAT TGGAAATATTTGCTCAACGGGGCAATGTCCCCGTAAGACCACTTCTTTTG GCAGATTTGTTTTCGAGAGATAATGTTTTCTGGTCAGTTTCTATCCGCAG AAAAATGTTTGGTTCGAGTTATTATTATTTTTAAGGAGAAATTGACCCTA TTTCTCCAAACCCCCTCAAACGGCCCAAGTGGGCGAAAGATCCCTTCGCT CGTGGGCTTAAGCTCCTTCCCTCACAACACTTCCGAGTGGTGCATACAGA GGGTGCACACTCTGGGGTGGAAAGTTCCCTCCGCTTGTCCTTGTTCTTTT TTTCCGTGTCAAAATGACTAAACCAGTATATTCATTGTGCAGGGTTTGCT GCACACCTGCGGAGGGTCCCACGATTATGATGATAAACAATCTCCATACA CCATCATGCAGCATGCACATGTCCCACCCCACATATCTCCCGCGTATAAA AATGAATATTGACTGTCATATTTTCCAGCATCTTACGTTGACGCCAACAC GGCCAAGCTATACACAGGATGCCGAGGCGATAGCTGCGGGACTGCAGCCT TGCAGGAGCACCTTGCTGCAAGGCTGTCCCATGCTGCCACTATTGTCAAG GATGACGATGGCTACGACGATGACAATCCAGAATCCATCCCGCCTGCACA CCGACGGACAAATCGCGAAACCGGCCGATTTCATACAGCATGGGTATGCG GTGTTTGATCTGGAGAAATACAAGCCTGAGCCAGAGCCTGCACTCAACAG CAGTGAAGAACAGTCGGCGTACCTGGACACCTCATCATGGTGGAACATGC ATAGCGTTTGAATGTACATTTTACCCATGCTCGCGATCATTGATTTATTT CTGACTGACAGTTTTACTCGGGGCCCCGCCATAATTTGCACAGAGATTTT TTAACGCGTTCTTTGTTCCCGACCAAACGTGACGGCCGGGAAATCCGCTC TCTCGAAAACGCTCCTTCCATAAGAAGTGGTCGAGGGTTATTTGCACTCC TAGTGGTAAATTACGGTAACGGTGGAGGTCAGGCTCATGCAAGAGGGGGG CGGGGGGTTGTTTTGCACATGAACGACTGACACATCGAAAGTATCCCCTC CCCCGTTTTCACCCACCGGGATTATCGTTCGTAAATCAACCCACTTGTCA CAGCCAGTAGAGCCACAGCTCTAACACTCATATAATAAATTCGTCGTACC CGTTTTGAGGTTACGTAATTGACTTGAAAATTCGTTTGTGTAAATTAATC AGGAAAACTAGGTTAACGAGGAGGGTCGTGAATTGTCCTCGGGAACAGCA CCGGTCCTCTAATAGTTTGCTGCCTCCTCTTACACCATGTTATTTTTATT ATTTTTGGTGAGATCTACTGCGTTCAATCGGCGATTTAAATGTTTGTTGT CCCATTATATGACTGACGGTAAAATACGGTAACGGCAACGCTGTATTGAC CATTCGTGGAAGATACTGGTGGTATGTACTGGAGATGTACGCGGTATATT CGGAGTTCCATGCTGGCGGTACTGAGTCATCGAAATATTTTGCTGTGGAC TGCGTACTGTGGATACACTCATTATTCTATCGGAGTTCGTACTGGTCTAC TGAGTACCCACCCTGACACTCGATGCTGGGGGAATACTGGCAGTATCTAG GATATGTGATGTAGTGTGACGACTCTTGCGTGATTGTTGATGAGTCTCGG CACGCGAATTCTCTCAACCTCGCATTTTTTTTCGTGTTTACTCCTTCAGC AGTGCTTCTGAAAAGCTGCTGTTCGCCCCCTTGTGCGCAGGTGAAGATGT GAAGACAATTATTACAATGCTTTTTTTACCACTGTCTATAAAAGGCTCTT GCTATAGTCCCAAGAAAATAGTGTCTGCGAAAACAAGAATCAATTTCTAG ATCTCACTTTGCTCTTGCACCAGTTGGCAGTCACTGGTTGGTTCGTTTGG ATCTCGTCTGCGCATTCGTGAGCTCTGAACGAGGCTCATACTTTTCAGGA CGCCAAAACCACCTGCACAACGTCTAGACACAAACCAAAGTTCGTTTTCG AATGTTGAGAATGTGCTTGTGATCCCGACATTCAAGAGGCTGTTTTTTAT TCGTTGATATTACAGAGGTCGTGCAGATGGCTGAGGTTAAGAAACCGTGA GGCTCCATCACAGCCCACAAATGCGCAGACGAGATTCATATGAACCAACC AGTGACTGCCAACTGCTCAAGGAGCAAGTGAAGACTAGAAACCGATTTTT GTGTTGGCGAACGCCCTGAGGATGGTAAGTGTTCTTTCTTATACAACAAG GACAGTCGGTACGAAACGAAAGCTTTTGTGTATTGTCTTATTTTTCTTTG AATGCCGCATCGTGGTTTTGCCGAGCAGGTGAAAATGCTAGATAAAGCCG GAAAGAGAATAAAAATGACTATATGGGACACGGCGGGGCAGGAGCGTTTC CGAACGCTCACCAGTTCGTACTACCGCGGGGCACAGGGCATCATGTTAGG TGAGTTTTGAGCATGGCAAAGCAAGCAGGCATTTGGCGATTAGGCAAGGA GGCAAGCAAGCAATCGCTGTTTTTACAAGTAAATATCGTGGCAGAGCAGA GCTCTATACTTGTATACCACAATCCCCCGAGTACCCCCCTTCCTGTACTG TTGACAAGCTATTTCATGACCACTCTAGAGTGTTTTTTCCGAATCGTATT CTCAGTGTACATGCTGTGCTGTTGGTGGAGCTGTTCTCCGCAAATGACGG GTATAGTGATGTCGCTGTGTTTTAGTAGGTGGTGGAGTTTTTGCTCCTGC ATGAAGTACACTACTGGTCGTGTTGTTGCTATCACGTATTATGTAGTATG TAGATTTGTATCAGTGTCGAATATCTTATGCACTCGAAAGAGGAAATCCA ATTTATTGATTTTTCTGCTCGTGATAGCAGTAGAGCAGCAGCAGGAGCGT GGCGGAAGCGACAGGGGAACAATCACTTGTCCTTGTCCTTACCCTTGCCC CCCTAGTAATCTGTTTTCGCTGATGAGTGTAAACAAATAAAGTTTGAAGT CAGCGTCACAGGTGCAGTGGTGTTATTATGTGAGCTTTAGAACTTTAGTT TAACTATGGCAGGGTCGACTTTCGAACGAAAAATTTCGAGAATGTCCGTT GTTGATGTGGAAACTATTGATGTGTTACCTACCCCCCCCCCCCCATGAAT ATTGCTTCGAATACCCCCGTGATCACGTCCAAAATGATATCTTCGTGGGT GTTATCCCCTTGTGAACTATGTTACACCAGCAAGTGCTCAATCAAACGCT CTAATCAACCAAGAGCCATCTTTCCAGCGAACCCGCGAACCAAACCTGTA ATCTCACCATTGACCAATTCAACCAGCCATTACCAGCTCATCGACCAAGT CAACCATGTAGCCAACCAAATCAGCGAAGGACCATTCTGAACAAGAGTGG TTCCCCCCTCTCTTTTCTTCTCTGTGTGATTCTCTTTTTGTACCCCCTAG CAAACACCCTTCGATATTGGTCTATTTGATGGTGTCGGACGAGGAAAAAA GATGAACTTTATCATACTCAAGTATGTGACCAATGTCCCGATCAAGCCCA ACCATGTAGCCAACTACCTAACCAGCTCAAATAGCAGTGTGCAACGGTAT TAGCGGGAGTGTATGATATCAACTGTCGCACGTCATGTGTAGGTAGTGAA GTGGTGACGAGTTATTGCGCGAGCGTGCTGCGTCATGAAAGGGGTGTAGC AATGGTCGGCACAACAGTTTGGCATCGTTGCATGTAACTCGCGCTCCGGG CACCTCCACTCTGTCCTAAATCCATATGTTTCATGTTTCGTCCAGACTTT TTTTTAACATTGGATATTAAAATTCAATTGGAATTTTCGATAAAAAAAAA TGCAGGCAGAATATAGGGAACGATAGACGAACATCATAAGAGACACCCGG TGCAGGTAATCAATTTGGCTGTTTGTTGCCATTTCAACTGGTGGTTGGAC CCAACAAAGTAATATAACACACACAGTACACATGAGCGATGCCAAGAAAT CACAGAGGCCTCCAGAAGACGTGCATCAGCTCCGACGATAGCCCTCTTCT TAGCTGCACATGACAGGGTTTTTTCGACAGAAGTCTGTCCCGCCCTGGGG GAGTTGGAGCAACTCGCGCGACTTTGGGAGCAAACATTGTATCGTTCACT GCCATTTTGTCTGATGTCAGACTTGACCAGTGTGGCTTCGTTTGCCTGTG TTGTGTGTTTTTTTGTATTTACTCCACGAAAAACTTCCTCACGAGAACAA CAGCTCACCCACTCTTTTTTTTCGTGGTGCTGTTTTTTTCTCTGTTCGTC GCCCTTCCATCGTCGGTGTGTCGGTAAACACTCGTTTTTTCCTTTTTTGT AAAATTATCATTTTTCTTGGGGTATCTTGACCTGGAAAAAGTCTACGACG TGACTCGGCCGGAAACTTTCGATAACCTGTCCAAGTGGCTGGAGGAGGTG GAAACTTATCACCCGGGCAGGGGCCGCGAGGTGAGTGGAAGAGAGAGACG GAGAAGCACAAAAGCAGCCGAATCCGTCTTTGCGATCAAACTTTCGGCAA GTTCTCTCTGTCGTCCAAGGCTCTACAAGCATGATTTTCGTCCATTTCGG AACAATTATTCAAGTCTGTACTCGAGAAAAAATTGAAAGACAATAGTTGA ACCCCCGTCGTACCTCCATGAAGCGAACGCGGCAAAAGAATGTTGTGTGT GCATCACGGGTGTGCTTGAGGAAGTAGCTAGGACAGACGACACACAGCGT GGACTGCATGAGCCTAGCACGTGTCTCTTTGGCGCAAATGTGTTGCATTG TTTGTGAAACACCTGAGTTTCGTTGGCGATTAACCTGAAGAAGGTGCGTT GAATATGACTCTGGCCTGGGTTTGGGTTGATGTGCGTCGAATCGATTTTG CATCTGTGGACGCTGCCTACACTCTAATGTGATGGGTTCGCGATGCGTTT TTTTCACGGGTGGTACTCGAAACTGAGCGGTGACAGGGGCGAGTCACGAA ATAATGGCGCCAACTAGCTGTTTAGTTTGTTACCATTAACACTCAGAAGA CGTTTCATTTTATCAACGGCATGGTTGTCTCGAAAATATTGTTTTTACCC CCCCTTCCCCAATAAATGACGTTTTCTTTTTTGAAAAAGTAGATACCTGG TAGAAAATATCTATCATTGGTCATTGAGATTTGTTGCTGCCACTTCATTT TTTCTAATCTCTTGTGAAGTACCCAAAATTCACCTCTAACTCTATCTTTG TATCTGGTATCGCGGTGGCTACCGCAGGTGGTGAAGCTTCTGGTGGGAAA CAAGGTTGACAAGGAGAGAGTCGTAACGCGCGCGCAGGCAGAGGAATACG CTCGAAGCAAGGGAATGCTGTTTTTGGAGACCAGGTAGGTGGTGCTCATT TGCTTAACACAGCTTTTCTATTGGTTTTGATCCCTTCCACGGGCGTATTG TAGCGAGACTGTCGTGCTGTAGTACTATAATTGAAAAGGAAAATACAATC ACACGGTCATTCAGTTGAGTTTAACCTTCTACATACTCGATAGTTAAGAC AGGGTGTCAAAAGAGGCTGATTTGGGATGAAAGAAATGTATCCAACAGCG AATGTCAAAAGTCAATGTCGAAAGAGCGATGGAATCTTTGTGGGCAAAAC CATTTACTCTACTATAGTACTTCCCTGCTATATGTAGTGTCTGTACTGGG CCACCTGTCTGAGCACTGATGGCTCCCCACCCTCGAAATCATGTCGTTAG ATTAGCCCTATTTTTGAGGTGATGGGAATTTTTCATAAAAGGGATTGCAT GAGAACCGGCGCGCACAGGATTACTCTCTAATTTGGATATCAAATCGCAT AATAACACTCGAAGTATCGTCTGAACGGTTGTTAATTATCAAAACGCAGT TCGCTTGTCAGATGTCCCCTTTCCGTTGACTGTTTTCATGCCCACAATCT TTGTGTTGACTTCGCCAGCGTAGGATGAAAACCCATACGACTAAATTTGA TGTGTCTCCCATGTTAAAGGTTATATTGTTTGATGGGTACCTCGACCGTA ATTGCAAGACCGCAAACCCTCCAGCCGATGGCGCCCCGGACTTGTGCTAT GTAGCTTCTAGTACAACGGATACCATAATATTTCTTCCCAATTTTGTGCT GTTTTCTGCAGTTGTATTCTATTTCAATCGGCCAGTAAGATAGCCACGCG TGATGCTTCGGGTTTTTTCTTTTCCTGTCGCAGCTCACCATGTACAACAT CAAACCTTGCCCCCCCCCCCCCCCCTGATTTAGACACCTTATAGATAAAT AATCCAGCAGCTTGAAGATACTCTTAACCTGCCCTCCCCATGGGCTTCAT CTCTTTCTCCGTGTGCTTGTTACTGTTGCAGCGCGAAGACAAAAGTTGGT GTGCGGCAGGTATTCGAAGAAGTGGTGCAAAAAATCCTGGACAACCCGTC GTTGCTCGCGAACACGGCCCCCGGCCGTCCGCGGGACACGGTGGACCCTT CGAGGCCTAACCCTTACCAGGGCGGGGGTGGGTTCTGTTGCGGTTGATTT TGACGCGCTTGCATGAAATGGTGTTTTGCGATGGTTCGCTGGCGCGAAGA GAAAAATGACGCGCTCATGTGGTCGCTCATTGGTCATGAGAAGAGCGGCT TCTTGGTATTGAGTAATTAGGTAGGCCCTGGTTGTGTCTTGATCCAGCTG CGGCAAAAGGGAAGGAAGGGATGCAAATAAGCATGCACTCCTCACCTCCT TCAGATCGTGACCTTCACTTTCTCCTGTTTTGACTTTGAGACTTTGCTTT TATTTGTTACCAGGATTTTTGTGTTGGTCTGACGACTGTTTCTAAGGCGT TTCGGGATTTTGGTTTGGAGGAGGAAGGTTGGAGCTTTTTCGGGTAGACA GTCAGCTCGTCTGTTTCGGCATGCCCGCCTTGGCAGGGATAGTTCACTGT CGCGGCCGTCGTTTGTGTCTGCGAAGTCAGGTCATTCGAAGGGCTCAACT CTCTCCAGGTAGCCACAGGATAGTCCGGAGGAAGGAGTCTATATCGTACT CCCGCTACCATGTCGTGGGGGTGGTTCGCAGCCAGGGCGTCTAGTTGTCG AGCTGTAGAGCGCGAATCTTCCATGTGCTTATAATGCACTAGCGTTTCAT AGCCTTTCCAAGTACGCGAGAGTAAGGGCGAGGACGCGCACGAAGGGAAC GTGGCGGGAACTGGCTACACTCTGAACTGCATGATATGGCTCAATGTGTA CGCTTGAATGTGCACACTTCATGTGTACGCTTGAATTTCCTTTGGCGCAT ATATAGGACTTGGTGTGTGGAAACGGGCCGCGAGCGAACGCATTGTATAG GGTATATCGGAAATGCTGTTAGGGCTGTTCGTGTGTAAGGGGTGGGGTTC TGGGTCCGTCGAGCCGTGGGCTGTGCTGCATTCTAGCAGTGAGCGCTGCA GCTGCTCTGAGGACGAATTGCTCACGCAGGATTGAGGGCAGGCTGTGTTT CAATTGATGTGTAGCTTTCAAAGTCTCTAAATCGCCCTTCGTCTTGTTTT GGTATGGCGTGAACTATTAAATGGGGCAAATAGCGCGCTTGACAAATCAA GTGAGCGGCCAAACCTTGGTCCGCGTGTTGACATGGTTCATGGCTCCCTA GCGATATCAGACCCTTCGATGGTCATTCTGCCCGTGTGCGTGAAACGAGA ATCGGGTCTCTCCTGCTGTTGGATAAGGCCGTGCCGATGCTGTTGTTCGA GACTCTGTACAGTATATATTCTCGGGGACTTTCATCTCTTTGTTGATGTT ATGGCCGAAAGATTTGGGAATGTGAGCACCCCCACATACGAGCAAAGAAA ATATGAATGCTGTGTAAATCTATTGTGTTGTGTCGTTTGTGTTTTGTTCA GAGAACTCGATGTGGTCTTTACTAGAGACACACACGCCGCAAGTGGGAAA ACTAGCGAACACATTTTACATCAAGCACGCTTCTAAAGTTGTTCAAAGGT CGCAACTTGCTGTTTATCCCGCTATGCAAACGGTTTCAAGGGCATAGTTT GGCAGGAAAAGCGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5368:159..8524+

>mRNA_H-paniculata_contig5368.12789.1 ID=mRNA_H-paniculata_contig5368.12789.1|Name=mRNA_H-paniculata_contig5368.12789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig5368:159..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGATTCACTGATGACACTTTTGACGAACACTTGCAGAGCACCAT
CGGGGTTGACTTTAAGATGCTGCGATTCACTGATGACACTTTTGACGAAC
ACTTGCAGAGCACCATCGGGGTTGACTTTAAGGTGAAAATGCTAGATAAA
GCCGGAAAGAGAATAAAAATGACTATATGGGACACGGCGGGGCAGGAGCG
TTTCCGAACGCTCACCAGTTCGTACTACCGCGGGGCACAGGGCATCATGT
TAGGTGAAAATGCTAGATAAAGCCGGAAAGAGAATAAAAATGACTATATG
GGACACGGCGGGGCAGGAGCGTTTCCGAACGCTCACCAGTTCGTACTACC
GCGGGGCACAGGGCATCATGTTAGTCTACGACGTGACTCGGCCGGAAACT
TTCGATAACCTGTCCAAGTGGCTGGAGGAGGTGGAAACTTATCACCCGGG
CAGGGGCCGCGAGTCTACGACGTGACTCGGCCGGAAACTTTCGATAACCT
GTCCAAGTGGCTGGAGGAGGTGGAAACTTATCACCCGGGCAGGGGCCGCG
AGGTGGTGAAGCTTCTGGTGGGAAACAAGGTTGACAAGGAGAGAGTCGTA
ACGCGCGCGCAGGCAGAGGAATACGCTCGAAGCAAGGGAATGCTGTTTTT
GGAGACCAGGTGGTGAAGCTTCTGGTGGGAAACAAGGTTGACAAGGAGAG
AGTCGTAACGCGCGCGCAGGCAGAGGAATACGCTCGAAGCAAGGGAATGC
TGTTTTTGGAGACCAGCGCGAAGACAAAAGTTGGTGTGCGGCAGGTATTC
GAAGAAGTGGTGCAAAAAATCCTGGACAACCCGTCGTTGCTCGCGAACAC
GGCCCCCGGCCGTCCGCGGGACACGGTGGACCCTTCGAGGCCTAACCCTT
ACCAGGGCGGGGGTGGGTTCTGTTGCGGTTGACGCGAAGACAAAAGTTGG
TGTGCGGCAGGTATTCGAAGAAGTGGTGCAAAAAATCCTGGACAACCCGT
CGTTGCTCGCGAACACGGCCCCCGGCCGTCCGCGGGACACGGTGGACCCT
TCGAGGCCTAACCCTTACCAGGGCGGGGGTGGGTTCTGTTGCGGTTGA
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