mRNA_H-paniculata_contig53228.12731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53228.12731.1
Unique NamemRNA_H-paniculata_contig53228.12731.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: A0A1J3GHI3_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GHI3_NOCCA)

HSP 1 Score: 48.9 bits (115), Expect = 5.620e-6
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 NPAI-NNGNTWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGKLDL 174
            NPA+ ++ +TW+ DSGAS+HMT++LA +  +  P +G D V+LGD S L +   G   +
Sbjct:   18 NPAMMSDSSTWLVDSGASHHMTSDLANL-SLHSPYSGGDDVLLGDNSALQISHTGSFSI 75
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: A0A1J3H344_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H344_NOCCA)

HSP 1 Score: 51.2 bits (121), Expect = 6.950e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   22 NTWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGKLDLIFHS 186
            N W+ DSGA++HMT++L  +    +P TG D V++GDGS L +   G L L  HS
Sbjct:   48 NAWLMDSGATHHMTSDLHHL-STNQPYTGNDAVLIGDGSGLSITHTGSLSLPSHS 101
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: A0A0D3AH29_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AH29_BRAOL)

HSP 1 Score: 47.8 bits (112), Expect = 1.120e-5
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   25 TWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGKLDL 174
            TW+ DSGAS+HMT++LA +  +  P  G D V+LGDGS L +   G   L
Sbjct:    8 TWLLDSGASHHMTSDLANL-SLHAPYNGGDDVILGDGSGLNISHTGSFSL 56
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: A0A803PZP0_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PZP0_CANSA)

HSP 1 Score: 48.5 bits (114), Expect = 6.560e-5
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 NPAINNGNTWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGKLDL 174
            NP +   + W ADSGASNH+T+++A +   ++P  G++ V++GDGS L +  VG  +L
Sbjct:  190 NPEVLESDAWFADSGASNHITSDVAALSQ-KQPYGGKEKVIVGDGSKLSISHVGSGNL 246
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: UPI0006AB0873 (uncharacterized protein LOC106385917 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB0873)

HSP 1 Score: 48.1 bits (113), Expect = 8.790e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 NPAINNG--NTWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGK 165
            N A+ NG  NTW+ DSGAS+HMT+++A +  +  P  G D V+LGDGS L +   G+
Sbjct:  335 NVAMMNGDANTWLLDSGASHHMTSDIANL-SLHTPYNGGDDVILGDGSGLNISHTGQ 390
[Close]
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Match: A0A6D2I5L4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I5L4_9BRAS)

HSP 1 Score: 48.1 bits (113), Expect = 9.030e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   28 WVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVVDLVGK 165
            WV DSGA++HMT++L  +  + +P TGED V++GDGS L +  +G 
Sbjct:  274 WVMDSGATHHMTSDLQNLA-LHQPYTGEDNVLIGDGSGLSITHIGS 318
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53228.12731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1J3GHI3_NOCCA5.620e-642.37Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A1J3H344_NOCCA6.950e-645.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A0D3AH29_BRAOL1.120e-548.00Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A803PZP0_CANSA6.560e-541.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0006AB08738.790e-547.37uncharacterized protein LOC106385917 n=2 Tax=Brass... [more]
A0A6D2I5L4_9BRAS9.030e-547.83Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53228contigH-paniculata_contig53228:257..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.1699233-CDS-H-paniculata_contig53228:256..4481622930540.1699233-CDS-H-paniculata_contig53228:256..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53228 257..448 +
1691481339.6184604-CDS-H-paniculata_contig53228:256..4481691481339.6184604-CDS-H-paniculata_contig53228:256..448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53228 257..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53228.12731.1prot_H-paniculata_contig53228.12731.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53228 257..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53228.12731.1

>prot_H-paniculata_contig53228.12731.1 ID=prot_H-paniculata_contig53228.12731.1|Name=mRNA_H-paniculata_contig53228.12731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
NPAINNGNTWVADSGASNHMTNNLATMYDIRKPVTGEDVVMLGDGSILVV
DLVGKLDLIFHSY*
back to top

mRNA from alignment at H-paniculata_contig53228:257..448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53228.12731.1 ID=mRNA_H-paniculata_contig53228.12731.1|Name=mRNA_H-paniculata_contig53228.12731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig53228:257..448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCAGCAATTAATAATGGCAATACGTGGGTGGCTGATTCCGGTGCAAG
TAATCACATGACGAACAATCTTGCAACAATGTATGATATTCGCAAGCCGG
TAACAGGGGAAGATGTGGTAATGTTGGGGGATGGATCGATTCTGGTGGTA
GATTTGGTGGGAAAGTTGGATTTGATTTTTCACTCCTACTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig53228:257..448+

>mRNA_H-paniculata_contig53228.12731.1 ID=mRNA_H-paniculata_contig53228.12731.1|Name=mRNA_H-paniculata_contig53228.12731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig53228:257..448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCAGCAATTAATAATGGCAATACGTGGGTGGCTGATTCCGGTGCAAG
TAATCACATGACGAACAATCTTGCAACAATGTATGATATTCGCAAGCCGG
TAACAGGGGAAGATGTGGTAATGTTGGGGGATGGATCGATTCTGGTGGTA
GATTTGGTGGGAAAGTTGGATTTGATTTTTCACTCCTACTGAAACCCAGC
AATTAATAATGGCAATACGTGGGTGGCTGATTCCGGTGCAAGTAATCACA
TGACGAACAATCTTGCAACAATGTATGATATTCGCAAGCCGGTAACAGGG
GAAGATGTGGTAATGTTGGGGGATGGATCGATTCTGGTGGTAGATTTGGT
GGGAAAGTTGGATTTGATTTTTCACTCCTACTGA
back to top