mRNA_H-paniculata_contig53180.12723.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53180.12723.1
Unique NamemRNA_H-paniculata_contig53180.12723.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53180.12723.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.720e-14
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    7 KRPYAIGAGSYLDPIFKEQTLVRPGILSAIMRQRYAILWTDTDIVWLGNPLPLL 168
            +R  A+ AG + D IFK +T+VRP IL +IM Q Y +LWTD DIVWLGNPLPLL
Sbjct: 1279 ERHRAVKAGQWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLL 1332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53180.12723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE2.720e-1462.96Nucleotid_trans domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53180contigH-paniculata_contig53180:499..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930539.359088-CDS-H-paniculata_contig53180:498..6661622930539.359088-CDS-H-paniculata_contig53180:498..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53180 499..666 -
1691481339.2975373-CDS-H-paniculata_contig53180:498..6661691481339.2975373-CDS-H-paniculata_contig53180:498..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53180 499..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53180.12723.1prot_H-paniculata_contig53180.12723.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53180 499..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53180.12723.1

>prot_H-paniculata_contig53180.12723.1 ID=prot_H-paniculata_contig53180.12723.1|Name=mRNA_H-paniculata_contig53180.12723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MQKRPYAIGAGSYLDPIFKEQTLVRPGILSAIMRQRYAILWTDTDIVWLG
NPLPLL
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mRNA from alignment at H-paniculata_contig53180:499..666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53180.12723.1 ID=mRNA_H-paniculata_contig53180.12723.1|Name=mRNA_H-paniculata_contig53180.12723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig53180:499..666- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAAGCGGCCCTATGCGATCGGGGCCGGGTCATATCTGGATCCCAT
ATTCAAGGAACAGACCCTTGTAAGGCCAGGCATTCTTTCCGCGATCATGC
GGCAGAGGTACGCGATCCTGTGGACGGACACCGACATAGTGTGGCTCGGG
AACCCCTTACCGCTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig53180:499..666-

>mRNA_H-paniculata_contig53180.12723.1 ID=mRNA_H-paniculata_contig53180.12723.1|Name=mRNA_H-paniculata_contig53180.12723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig53180:499..666- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAAGCGGCCCTATGCGATCGGGGCCGGGTCATATCTGGATCCCAT
ATTCAAGGAACAGACCCTTGTAAGGCCAGGCATTCTTTCCGCGATCATGC
GGCAGAGGTACGCGATCCTGTGGACGGACACCGACATAGTGTGGCTCGGG
AACCCCTTACCGCTACTAATGCAGAAGCGGCCCTATGCGATCGGGGCCGG
GTCATATCTGGATCCCATATTCAAGGAACAGACCCTTGTAAGGCCAGGCA
TTCTTTCCGCGATCATGCGGCAGAGGTACGCGATCCTGTGGACGGACACC
GACATAGTGTGGCTCGGGAACCCCTTACCGCTACTA
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